AT3G24060

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012901
Physical Location & Seq
Reverse (-)
8689589 .. 8690032
444 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G24060.1

Sequence Viewer

Length: 444 bp
ATGAACACTCGAAAAACAATCATTCTTCTTCTGTTTATGCTTATCGCCATCTCCTTAACGATCATCTTCACGTTGATGCTTCAGCCACAAACTATGTTTCTAGGAGAAGAATTCGACGTGCGTGTGATCAACAGCTTCAGAGACAACTCTTCTCTCCCTCTAGTTATCTGGTGCACTTCGCCGCAAGGAGATCTCGGTGGTCGTGCGCTTCAAGAAGGTGATGACTTCGAATGGACGGCCAAGATCGATTTGTGGTCATGGATGGCAGAGTACACATGTACAATGAAGTGGGATTCAAAGAGGAAACAGTTCGAGGCGTTTAAGGTTTCTAGAGACAGCAATAGATGTGGATCTACTAAGAAGTGTTCTTGGTCCGTTAGAGAAGATGGATTTTATTTTAGTAGTGATGAGGTTTATTGGACCAAGGATTTTTCTTGGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

147

Amino Acids

17.28

Weight (kDa)

5.19

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 40 - 146 9.5e-23 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012901)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24060
fragaria_vesca FvH4_4g05670
malus_domestica MD13G1228600.v1.1 MD16G1234100.v1.1
prunus_persica Prupe.1G058400_v2.0.a1
pyrus_communis pycom13g20090
rosa_chinensis RchiOBHm_Chr4g0396841
rosa_laevigata RLG00000009500
rosa_multiflora Rmu_sc0000487.1_g000063
rosa_roxburghii Rroxscaffold_5G00341700
rosa_rugosa Rorug03G0347300
rosa_samantha Rh4AG072200 Rh4AG073000 Rh4AG074600 Rh4BG070200 Rh4CG078600 Rh4DG067900
rosa_wichuraiana Rw4G005950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 442
AciI CCGC 1 cut(s) 182
AclWI GGATC 1 cut(s) 358
AcoI YGGCCR 1 cut(s) 237
AcsI RAATTY 1 cut(s) 110
AcuI CTGAAG 2 cut(s) 65, 121
AfaI GTAC 2 cut(s) 272, 280
AflIII ACRYGT 1 cut(s) 275
AgsI TTSAA 2 cut(s) 212, 297
AjiI CACGTC 1 cut(s) 118
AluBI AGCT 1 cut(s) 135
AluI AGCT 1 cut(s) 135
Alw21I GWGCWC 1 cut(s) 176
Alw26I GTCTC 2 cut(s) 135, 327
Alw44I GTGCAC 1 cut(s) 172
AlwI GGATC 1 cut(s) 358
AoxI GGCC 1 cut(s) 237
ApaLI GTGCAC 1 cut(s) 172
ApoI RAATTY 1 cut(s) 110
Asp700I GAANNNNTTC 1 cut(s) 308
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 2 cut(s) 372, 420
AsuHPI GGTGA 1 cut(s) 230
AsuII TTCGAA 1 cut(s) 228
AvaII GGWCC 2 cut(s) 372, 420
BaeGI GKGCMC 1 cut(s) 176
Bbv12I GWGCWC 1 cut(s) 176
BccI CCATC 3 cut(s) 56, 256, 380
BceAI ACGGC 1 cut(s) 252
BclI TGATCA 1 cut(s) 126
BcoDI GTCTC 2 cut(s) 135, 327
BfaI CTAG 3 cut(s) 101, 161, 330
BglII AGATCT 1 cut(s) 190
BisI GCNGC 1 cut(s) 182
BlsI GCNGC 1 cut(s) 183
Bme18I GGWCC 2 cut(s) 372, 420
BmgBI CACGTC 1 cut(s) 118
BmgT120I GGNCC 2 cut(s) 372, 420
BmsI GCATC 1 cut(s) 66
Bpu14I TTCGAA 1 cut(s) 228
Bsa29I ATCGAT 1 cut(s) 246
BsaBI GATNNNNATC 1 cut(s) 349
BsaJI CCNNGG 1 cut(s) 423
Bse8I GATNNNNATC 1 cut(s) 349
BseCI ATCGAT 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 423
BseGI GGATG 1 cut(s) 267
BseJI GATNNNNATC 1 cut(s) 349
BseSI GKGCMC 1 cut(s) 176
BshFI GGCC 1 cut(s) 239
BshVI ATCGAT 1 cut(s) 246
BsiHKAI GWGCWC 1 cut(s) 176
BsmAI GTCTC 2 cut(s) 135, 327
BsnI GGCC 1 cut(s) 239
Bsp119I TTCGAA 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 176
Bsp1407I TGTACA 1 cut(s) 278
Bsp143I GATC 5 cut(s) 60, 126, 190, 243, 350
BspACI CCGC 1 cut(s) 182
BspANI GGCC 1 cut(s) 239
BspDI ATCGAT 1 cut(s) 246
BspPI GGATC 1 cut(s) 358
BspT104I TTCGAA 1 cut(s) 228
BsrGI TGTACA 1 cut(s) 278
BssECI CCNNGG 1 cut(s) 423
BssMI GATC 5 cut(s) 60, 126, 190, 243, 350
BssT1I CCWWGG 1 cut(s) 423
Bst4CI ACNGT 1 cut(s) 309
Bst6I CTCTTC 1 cut(s) 154
BstAUI TGTACA 1 cut(s) 278
BstBI TTCGAA 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 357
BstF5I GGATG 1 cut(s) 267
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 5 cut(s) 63, 129, 193, 246, 353
BstMAI GTCTC 2 cut(s) 135, 327
BstMBI GATC 5 cut(s) 60, 126, 190, 243, 350
BstNSI RCATGY 1 cut(s) 279
BstSLI GKGCMC 1 cut(s) 176
BstX2I RGATCY 2 cut(s) 190, 350
BstYI RGATCY 2 cut(s) 190, 350
Bsu15I ATCGAT 1 cut(s) 246
BsuRI GGCC 1 cut(s) 239
BsuTUI ATCGAT 1 cut(s) 246
BtrI CACGTC 1 cut(s) 118
BtsCI GGATG 1 cut(s) 267
CfoI GCGC 1 cut(s) 208
Cfr13I GGNCC 2 cut(s) 372, 420
ClaI ATCGAT 1 cut(s) 246
Csp6I GTAC 2 cut(s) 271, 279
CspCI CAANNNNNGTGG 2 cut(s) 328, 363
CviAII CATG 2 cut(s) 258, 276
CviJI RGCY 3 cut(s) 85, 135, 239
CviKI_1 RGCY 3 cut(s) 85, 135, 239
CviQI GTAC 2 cut(s) 271, 279
DdeI CTNAG 1 cut(s) 357
DpnI GATC 5 cut(s) 62, 128, 192, 245, 352
DpnII GATC 5 cut(s) 60, 126, 190, 243, 350
EaeI YGGCCR 1 cut(s) 237
Eam1104I CTCTTC 1 cut(s) 154
EarI CTCTTC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 423
Eco47I GGWCC 2 cut(s) 372, 420
Eco57I CTGAAG 2 cut(s) 65, 121
EcoRI GAATTC 1 cut(s) 110
EcoT14I CCWWGG 1 cut(s) 423
ErhI CCWWGG 1 cut(s) 423
FaeI CATG 2 cut(s) 261, 279
FaiI YATR 5 cut(s) 38, 95, 259, 277, 442
FatI CATG 2 cut(s) 257, 275
FbaI TGATCA 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 182
FokI GGATG 1 cut(s) 274
Fsp4HI GCNGC 1 cut(s) 182
FspBI CTAG 3 cut(s) 101, 161, 330
GlaI GCGC 1 cut(s) 207
GluI GCNGC 1 cut(s) 182
HaeIII GGCC 1 cut(s) 239
HhaI GCGC 1 cut(s) 208
Hin1II CATG 2 cut(s) 261, 279
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HinfI GANTC 1 cut(s) 293
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 2 cut(s) 174, 273
Hpy188I TCNGA 1 cut(s) 140
Hpy188III TCNNGA 2 cut(s) 212, 330
Hpy8I GTNNAC 2 cut(s) 174, 273
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 209
HpyCH4III ACNGT 1 cut(s) 309
HpyCH4IV ACGT 2 cut(s) 71, 117
HpyCH4V TGCA 1 cut(s) 174
HpyF3I CTNAG 1 cut(s) 357
HpySE526I ACGT 2 cut(s) 71, 117
Hsp92II CATG 2 cut(s) 261, 279
HspAI GCGC 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 126
Kzo9I GATC 5 cut(s) 60, 126, 190, 243, 350
LpnPI CCDG 1 cut(s) 154
LweI GCATC 1 cut(s) 66
MaeI CTAG 3 cut(s) 101, 161, 330
MaeII ACGT 2 cut(s) 71, 117
MalI GATC 5 cut(s) 62, 128, 192, 245, 352
MboI GATC 5 cut(s) 60, 126, 190, 243, 350
MboII GAAGA 6 cut(s) 17, 20, 58, 119, 141, 395
MflI RGATCY 2 cut(s) 190, 350
MhlI GDGCHC 1 cut(s) 176
MluCI AATT 1 cut(s) 110
MnlI CCTC 4 cut(s) 168, 294, 307, 403
MroXI GAANNNNTTC 1 cut(s) 308
MseI TTAA 2 cut(s) 56, 321
MslI CAYNNNNRTG 1 cut(s) 74
NdeII GATC 5 cut(s) 60, 126, 190, 243, 350
NlaIII CATG 2 cut(s) 261, 279
NspI RCATGY 1 cut(s) 279
NspV TTCGAA 1 cut(s) 228
PciI ACATGT 1 cut(s) 275
PdmI GAANNNNTTC 1 cut(s) 308
PfeI GAWTC 1 cut(s) 293
PkrI GCNGC 1 cut(s) 183
PscI ACATGT 1 cut(s) 275
PsiI TTATAA 1 cut(s) 442
PspPI GGNCC 2 cut(s) 372, 420
PsuI RGATCY 2 cut(s) 190, 350
RsaI GTAC 2 cut(s) 272, 280
RsaNI GTAC 2 cut(s) 271, 279
RseI CAYNNNNRTG 1 cut(s) 74
SaqAI TTAA 2 cut(s) 56, 321
SatI GCNGC 1 cut(s) 182
Sau3AI GATC 5 cut(s) 60, 126, 190, 243, 350
Sau96I GGNCC 2 cut(s) 372, 420
SduI GDGCHC 1 cut(s) 176
SetI ASST 6 cut(s) 74, 120, 137, 220, 327, 414
SfaNI GCATC 1 cut(s) 66
SfuI TTCGAA 1 cut(s) 228
SinI GGWCC 2 cut(s) 372, 420
SmiMI CAYNNNNRTG 1 cut(s) 74
Sse9I AATT 1 cut(s) 110
SsiI CCGC 1 cut(s) 182
SspMI CTAG 3 cut(s) 101, 161, 330
StyI CCWWGG 1 cut(s) 423
TaaI ACNGT 1 cut(s) 309
TaiI ACGT 2 cut(s) 74, 120
TaqI TCGA 5 cut(s) 10, 114, 228, 246, 312
TasI AATT 1 cut(s) 110
TatI WGTACW 2 cut(s) 270, 278
TauI GCSGC 1 cut(s) 184
TfiI GAWTC 1 cut(s) 293
Tru1I TTAA 2 cut(s) 56, 321
Tru9I TTAA 2 cut(s) 56, 321
TspDTI ATGAA 2 cut(s) 17, 299
TspGWI ACGGA 1 cut(s) 364
VneI GTGCAC 1 cut(s) 172
VpaK11BI GGWCC 2 cut(s) 372, 420
XapI RAATTY 1 cut(s) 110
XbaI TCTAGA 1 cut(s) 329
XceI RCATGY 1 cut(s) 279
XmnI GAANNNNTTC 1 cut(s) 308
XspI CTAG 3 cut(s) 101, 161, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.