Rorug03G0347300

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0012901
Physical Location & Seq
Reverse (-)
42195820 .. 42196696
877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0347300.1

Sequence Viewer

Length: 300 bp
ATGACGGCTTTGCTTCGAAATCTTGATCATTGCCTCTCAAGCTATTCATCTGCGGCTAAATTTGACGAAGTGACCCTTGCCAATGTGAACAACTTCAAAAAGCGCTCAAAAAGCCAGTCACCTAATGCAATCCACAAAGAATATATAGTGGTTACAATTCTGGTGGCTACTGATGGAGAACAGAAGTTGCCCACCATCAGTGGCACTCATGACTTGAAGAAAGCATTACATAAACTTGGAGCCATTTCCTCGAACAAAATAATGATGATTTCTTCCAAGGAAGCAAGCTGCTTGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

99

Amino Acids

10.79

Weight (kDa)

9.39

Isoelectric Point (pI)

50.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 15 - 89 1.3e-16 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012901)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24060
fragaria_vesca FvH4_4g05670
malus_domestica MD13G1228600.v1.1 MD16G1234100.v1.1
prunus_persica Prupe.1G058400_v2.0.a1
pyrus_communis pycom13g20090
rosa_chinensis RchiOBHm_Chr4g0396841
rosa_laevigata RLG00000009500
rosa_multiflora Rmu_sc0000487.1_g000063
rosa_roxburghii Rroxscaffold_5G00341700
rosa_rugosa Rorug03G0347300
rosa_samantha Rh4AG072200 Rh4AG073000 Rh4AG074600 Rh4BG070200 Rh4CG078600 Rh4DG067900
rosa_wichuraiana Rw4G005950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 53
AcsI RAATTY 1 cut(s) 59
AfeI AGCGCT 1 cut(s) 104
AgsI TTSAA 2 cut(s) 97, 217
AluBI AGCT 2 cut(s) 42, 288
AluI AGCT 2 cut(s) 42, 288
Aor51HI AGCGCT 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 288
ApoI RAATTY 1 cut(s) 59
ArsI GACNNNNNNTTYG 2 cut(s) 101, 133
Asp700I GAANNNNTTC 1 cut(s) 92
AspLEI GCGC 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 111
AsuII TTCGAA 1 cut(s) 16
BbvI GCAGC 1 cut(s) 275
BccI CCATC 2 cut(s) 167, 203
BceAI ACGGC 1 cut(s) 21
BclI TGATCA 1 cut(s) 25
BfoI RGCGCY 1 cut(s) 106
BisI GCNGC 2 cut(s) 54, 289
BlsI GCNGC 2 cut(s) 55, 290
BmiI GGNNCC 1 cut(s) 241
Bpu14I TTCGAA 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 22
BsaJI CCNNGG 1 cut(s) 276
Bse1I ACTGG 1 cut(s) 115
Bse3DI GCAATG 1 cut(s) 28
BseDI CCNNGG 1 cut(s) 276
BseMI GCAATG 1 cut(s) 28
BseNI ACTGG 1 cut(s) 115
BseXI GCAGC 1 cut(s) 275
Bsp119I TTCGAA 1 cut(s) 16
Bsp143I GATC 1 cut(s) 25
BspACI CCGC 1 cut(s) 53
BspHI TCATGA 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 241
BspT104I TTCGAA 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 28
BsrI ACTGG 1 cut(s) 115
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 1 cut(s) 25
BssT1I CCWWGG 1 cut(s) 276
BstBI TTCGAA 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 286
BstH2I RGCGCY 1 cut(s) 106
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 1 cut(s) 28
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 2 cut(s) 39, 111
BstV1I GCAGC 1 cut(s) 275
BtsIMutI CAGTG 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 286
CciI TCATGA 1 cut(s) 208
CfoI GCGC 1 cut(s) 105
CspCI CAANNNNNGTGG 2 cut(s) 144, 179
CviAII CATG 1 cut(s) 209
CviJI RGCY 7 cut(s) 8, 42, 56, 114, 167, 242, 288
CviKI_1 RGCY 7 cut(s) 8, 42, 56, 114, 167, 242, 288
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 276
Eco47III AGCGCT 1 cut(s) 104
EcoT14I CCWWGG 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 1 cut(s) 212
FaiI YATR 5 cut(s) 144, 146, 210, 231, 298
FalI AAGNNNNNCTT 2 cut(s) 60, 92
FatI CATG 1 cut(s) 208
FbaI TGATCA 1 cut(s) 25
Fnu4HI GCNGC 2 cut(s) 54, 289
Fsp4HI GCNGC 2 cut(s) 54, 289
GlaI GCGC 1 cut(s) 104
GluI GCNGC 2 cut(s) 54, 289
HaeII RGCGCY 1 cut(s) 106
HhaI GCGC 1 cut(s) 105
Hin1II CATG 1 cut(s) 212
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HphI GGTGA 1 cut(s) 111
Hpy166II GTNNAC 1 cut(s) 88
Hpy188III TCNNGA 2 cut(s) 23, 209
Hpy8I GTNNAC 1 cut(s) 88
HpyCH4V TGCA 1 cut(s) 128
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 111
Hsp92II CATG 1 cut(s) 212
HspAI GCGC 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 1 cut(s) 25
LmnI GCTCC 1 cut(s) 239
LpnPI CCDG 2 cut(s) 128, 146
Lsp1109I GCAGC 1 cut(s) 275
MaeIII GTNAC 3 cut(s) 70, 117, 151
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 2 cut(s) 229, 264
MluCI AATT 2 cut(s) 59, 156
MnlI CCTC 2 cut(s) 44, 259
MroXI GAANNNNTTC 1 cut(s) 92
MwoI GCNNNNNNNGC 2 cut(s) 39, 111
NdeII GATC 1 cut(s) 25
NlaIII CATG 1 cut(s) 212
NlaIV GGNNCC 1 cut(s) 241
NmuCI GTSAC 2 cut(s) 70, 117
NspV TTCGAA 1 cut(s) 16
PagI TCATGA 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 92
PkrI GCNGC 2 cut(s) 55, 290
PspN4I GGNNCC 1 cut(s) 241
SatI GCNGC 2 cut(s) 54, 289
Sau3AI GATC 1 cut(s) 25
SetI ASST 3 cut(s) 44, 124, 290
SfuI TTCGAA 1 cut(s) 16
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
Sse9I AATT 2 cut(s) 59, 156
SsiI CCGC 1 cut(s) 53
StyI CCWWGG 1 cut(s) 276
TaqI TCGA 2 cut(s) 16, 251
TasI AATT 2 cut(s) 59, 156
TauI GCSGC 1 cut(s) 56
TscAI CASTG 1 cut(s) 205
TseFI GTSAC 2 cut(s) 70, 117
TseI GCWGC 1 cut(s) 288
Tsp45I GTSAC 2 cut(s) 70, 117
TspDTI ATGAA 1 cut(s) 36
TspRI CASTG 1 cut(s) 205
XapI RAATTY 1 cut(s) 59
XmnI GAANNNNTTC 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.