Rroxscaffold_5G00341700

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0012901
Physical Location & Seq
Reverse (-)
10275976 .. 10277386
1411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00341700.1

Sequence Viewer

Length: 519 bp
ATGCCTGCACCAACGTCGTGGCACACAAGAACCAACAAGAACATCAATAAGAGTTTCACTAGAGTTAGCGAGTGGAGCGCGTACTCACAAAGAATGAAAATCATCAACAGCATTCTCCTCATATGTGGCCTCGCATTCTTCGTGATCTTTATGTCTCTGTTGGAACCCCAGAACTTGCTGGGCACTGAATATGATGTTCGAGTCATCAACGGCTTCACAAACAACTCGTCCCTGCCGCTGGTCATCTGGTGTTCATCGAAAGAGAATGATCTCGGTGGACGTGCGCTACAGGAGAAGGATGACTTCAGTTGGAGGCTGAGGACCAACTTCTGGGGCACGAGTAACCACTTCGTTTGCACGATGAAATGGGACAAAAAGCGGAAGCGCTTCGACGCCTTCAAGATTTCGAGAGACGTTCAACGGTGTGGTCCTTTCCGGAAGTGCTCATGGCTGGTGAGGGAGGATGGGTTTTATTTCAGCAACGATGAAGTAAACTGGAAAAAGGACTTTTCATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

172

Amino Acids

20.38

Weight (kDa)

9.54

Isoelectric Point (pI)

40.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 66 - 172 1.1e-25 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012901)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24060
fragaria_vesca FvH4_4g05670
malus_domestica MD13G1228600.v1.1 MD16G1234100.v1.1
prunus_persica Prupe.1G058400_v2.0.a1
pyrus_communis pycom13g20090
rosa_chinensis RchiOBHm_Chr4g0396841
rosa_laevigata RLG00000009500
rosa_multiflora Rmu_sc0000487.1_g000063
rosa_roxburghii Rroxscaffold_5G00341700
rosa_rugosa Rorug03G0347300
rosa_samantha Rh4AG072200 Rh4AG073000 Rh4AG074600 Rh4BG070200 Rh4CG078600 Rh4DG067900
rosa_wichuraiana Rw4G005950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 330
AccII CGCG 1 cut(s) 80
AccIII TCCGGA 1 cut(s) 435
AciI CCGC 2 cut(s) 236, 379
AcuI CTGAAG 1 cut(s) 289
AcyI GRCGYC 1 cut(s) 393
AfaI GTAC 1 cut(s) 83
AfeI AGCGCT 1 cut(s) 386
AfiI CCNNNNNNNGG 2 cut(s) 238, 330
AgsI TTSAA 2 cut(s) 400, 419
AjiI CACGTC 1 cut(s) 281
Alw21I GWGCWC 1 cut(s) 446
Alw26I GTCTC 2 cut(s) 159, 405
Aor13HI TCCGGA 1 cut(s) 435
Aor51HI AGCGCT 1 cut(s) 386
AoxI GGCC 1 cut(s) 127
ArsI GACNNNNNNTTYG 2 cut(s) 212, 244
Asp700I GAANNNNTTC 1 cut(s) 386
AspLEI GCGC 3 cut(s) 80, 286, 387
AspS9I GGNCC 2 cut(s) 321, 428
AsuHPI GGTGA 1 cut(s) 466
AvaII GGWCC 2 cut(s) 321, 428
BaeGI GKGCMC 2 cut(s) 185, 338
BauI CACGAG 1 cut(s) 337
Bbv12I GWGCWC 1 cut(s) 446
BbvCI CCTCAGC 1 cut(s) 317
BccI CCATC 1 cut(s) 458
BceAI ACGGC 1 cut(s) 226
BcgI CGANNNNNNTGC 1 cut(s) 31
BcoDI GTCTC 2 cut(s) 159, 405
BfaI CTAG 1 cut(s) 60
BfmI CTRYAG 1 cut(s) 287
BfoI RGCGCY 1 cut(s) 388
BisI GCNGC 1 cut(s) 236
BlsI GCNGC 1 cut(s) 237
Bme18I GGWCC 2 cut(s) 321, 428
BmgBI CACGTC 1 cut(s) 281
BmgT120I GGNCC 2 cut(s) 321, 428
BmiI GGNNCC 1 cut(s) 165
Bpu10I CCTNAGC 1 cut(s) 317
BsaHI GRCGYC 1 cut(s) 393
BsaWI WCCGGW 1 cut(s) 435
BsaXI ACNNNNNCTCC 2 cut(s) 452, 482
Bsc4I CCNNNNNNNGG 2 cut(s) 238, 330
Bse1I ACTGG 1 cut(s) 500
BseAI TCCGGA 1 cut(s) 435
BseGI GGATG 2 cut(s) 304, 469
BseLI CCNNNNNNNGG 2 cut(s) 238, 330
BseMII CTCAG 1 cut(s) 308
BseNI ACTGG 1 cut(s) 500
BseRI GAGGAG 1 cut(s) 107
BseSI GKGCMC 2 cut(s) 185, 338
BseYI CCCAGC 1 cut(s) 178
Bsh1236I CGCG 1 cut(s) 80
BshFI GGCC 1 cut(s) 129
BsiHKAI GWGCWC 1 cut(s) 446
BsiSI CCGG 1 cut(s) 436
BslFI GGGAC 2 cut(s) 214, 383
BslI CCNNNNNNNGG 2 cut(s) 238, 330
BsmAI GTCTC 2 cut(s) 159, 405
BsmBI CGTCTC 1 cut(s) 405
BsmFI GGGAC 2 cut(s) 214, 383
BsmI GAATGC 2 cut(s) 111, 134
BsnI GGCC 1 cut(s) 129
Bsp1286I GDGCHC 3 cut(s) 185, 338, 446
Bsp13I TCCGGA 1 cut(s) 435
Bsp143I GATC 2 cut(s) 144, 268
BspACI CCGC 2 cut(s) 236, 379
BspANI GGCC 1 cut(s) 129
BspCNI CTCAG 1 cut(s) 309
BspEI TCCGGA 1 cut(s) 435
BspFNI CGCG 1 cut(s) 80
BspLI GGNNCC 1 cut(s) 165
BsrI ACTGG 1 cut(s) 500
BssMI GATC 2 cut(s) 144, 268
BssNI GRCGYC 1 cut(s) 393
BssSI CACGAG 1 cut(s) 337
Bst2BI CACGAG 1 cut(s) 337
Bst4CI ACNGT 1 cut(s) 423
BstACI GRCGYC 1 cut(s) 393
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 317
BstF5I GGATG 2 cut(s) 304, 469
BstFNI CGCG 1 cut(s) 80
BstH2I RGCGCY 1 cut(s) 388
BstHHI GCGC 3 cut(s) 80, 286, 387
BstKTI GATC 2 cut(s) 147, 271
BstMAI GTCTC 2 cut(s) 159, 405
BstMBI GATC 2 cut(s) 144, 268
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstSFI CTRYAG 1 cut(s) 287
BstSLI GKGCMC 2 cut(s) 185, 338
BstUI CGCG 1 cut(s) 80
BstXI CCANNNNNNTGG 1 cut(s) 18
BsuRI GGCC 1 cut(s) 129
BtrI CACGTC 1 cut(s) 281
BtsCI GGATG 2 cut(s) 304, 469
BtsIMutI CAGTG 1 cut(s) 183
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 3 cut(s) 80, 286, 387
Cfr13I GGNCC 2 cut(s) 321, 428
CseI GACGC 1 cut(s) 401
Csp6I GTAC 1 cut(s) 82
CspCI CAANNNNNGTGG 2 cut(s) 335, 370
CviAII CATG 2 cut(s) 447, 513
CviJI RGCY 4 cut(s) 129, 213, 316, 451
CviKI_1 RGCY 4 cut(s) 129, 213, 316, 451
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 1 cut(s) 317
DpnI GATC 2 cut(s) 146, 270
DpnII GATC 2 cut(s) 144, 268
Eco47I GGWCC 2 cut(s) 321, 428
Eco47III AGCGCT 1 cut(s) 386
Eco57I CTGAAG 1 cut(s) 289
Esp3I CGTCTC 1 cut(s) 405
FaeI CATG 2 cut(s) 450, 516
FaiI YATR 6 cut(s) 122, 124, 152, 192, 448, 514
FalI AAGNNNNNCTT 2 cut(s) 287, 319
FaqI GGGAC 2 cut(s) 214, 383
FatI CATG 2 cut(s) 446, 512
FauNDI CATATG 1 cut(s) 122
Fnu4HI GCNGC 1 cut(s) 236
FokI GGATG 2 cut(s) 311, 476
Fsp4HI GCNGC 1 cut(s) 236
FspBI CTAG 1 cut(s) 60
GlaI GCGC 3 cut(s) 79, 285, 386
GluI GCNGC 1 cut(s) 236
GsaI CCCAGC 1 cut(s) 182
HaeII RGCGCY 1 cut(s) 388
HaeIII GGCC 1 cut(s) 129
HapII CCGG 1 cut(s) 436
HgaI GACGC 1 cut(s) 401
HhaI GCGC 3 cut(s) 80, 286, 387
Hin1I GRCGYC 1 cut(s) 393
Hin1II CATG 2 cut(s) 450, 516
Hin6I GCGC 3 cut(s) 78, 284, 385
HinP1I GCGC 3 cut(s) 78, 284, 385
HinfI GANTC 1 cut(s) 201
HpaII CCGG 1 cut(s) 436
HphI GGTGA 1 cut(s) 466
Hpy166II GTNNAC 2 cut(s) 278, 493
Hpy188III TCNNGA 4 cut(s) 142, 400, 408, 436
Hpy8I GTNNAC 2 cut(s) 278, 493
Hpy99I CGWCG 2 cut(s) 19, 395
HpyAV CCTTC 2 cut(s) 289, 406
HpyCH4III ACNGT 1 cut(s) 423
HpyCH4IV ACGT 3 cut(s) 14, 280, 414
HpyCH4V TGCA 2 cut(s) 8, 357
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
HpyF3I CTNAG 1 cut(s) 317
HpySE526I ACGT 3 cut(s) 14, 280, 414
Hsp92I GRCGYC 1 cut(s) 393
Hsp92II CATG 2 cut(s) 450, 516
HspAI GCGC 3 cut(s) 78, 284, 385
Kpn2I TCCGGA 1 cut(s) 435
Kzo9I GATC 2 cut(s) 144, 268
LmnI GCTCC 1 cut(s) 75
MaeI CTAG 1 cut(s) 60
MaeII ACGT 3 cut(s) 14, 280, 414
MaeIII GTNAC 1 cut(s) 341
MalI GATC 2 cut(s) 146, 270
MboI GATC 2 cut(s) 144, 268
MboII GAAGA 1 cut(s) 130
MhlI GDGCHC 3 cut(s) 185, 338, 446
MlyI GAGTC 1 cut(s) 210
MmeI TCCRAC 2 cut(s) 141, 290
MnlI CCTC 6 cut(s) 128, 140, 306, 312, 450, 454
MroI TCCGGA 1 cut(s) 435
MroXI GAANNNNTTC 1 cut(s) 386
MspA1I CMGCKG 1 cut(s) 238
MspI CCGG 1 cut(s) 436
Mva1269I GAATGC 2 cut(s) 111, 134
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 75
NdeI CATATG 1 cut(s) 122
NdeII GATC 2 cut(s) 144, 268
NlaIII CATG 2 cut(s) 450, 516
NlaIV GGNNCC 1 cut(s) 165
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PctI GAATGC 2 cut(s) 111, 134
PdmI GAANNNNTTC 1 cut(s) 386
PflMI CCANNNNNTGG 1 cut(s) 330
PkrI GCNGC 1 cut(s) 237
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
PspFI CCCAGC 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 2 cut(s) 321, 428
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
SatI GCNGC 1 cut(s) 236
Sau3AI GATC 2 cut(s) 144, 268
Sau96I GGNCC 2 cut(s) 321, 428
SchI GAGTC 1 cut(s) 210
SduI GDGCHC 3 cut(s) 185, 338, 446
SetI ASST 3 cut(s) 17, 283, 417
SfcI CTRYAG 1 cut(s) 287
SinI GGWCC 2 cut(s) 321, 428
SsiI CCGC 2 cut(s) 236, 379
SspMI CTAG 1 cut(s) 60
TaaI ACNGT 1 cut(s) 423
TaiI ACGT 3 cut(s) 17, 283, 417
TaqI TCGA 4 cut(s) 199, 257, 390, 407
TauI GCSGC 1 cut(s) 238
TscAI CASTG 1 cut(s) 190
TspDTI ATGAA 5 cut(s) 110, 243, 377, 501, 501
TspRI CASTG 1 cut(s) 190
Van91I CCANNNNNTGG 1 cut(s) 330
VpaK11BI GGWCC 2 cut(s) 321, 428
XmnI GAANNNNTTC 1 cut(s) 386
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.