Rmu_sc0000487.1_g000063

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000487.1
OG0012901
Physical Location & Seq
Reverse (-)
269183 .. 269608
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000487.1_g000063.1.cds

Sequence Viewer

Length: 426 bp
atgaaaatcatcaacagcgttctcctcatatgtggcctcgcatccttcgtgatctttatgtctctgttggaaccccagaacttgctgggcactgaatatgacgttcgagtcatcaacggcttcacaaacaactcgtccctgccgctggtaatctggtgttcatcgaaagagaatgatctcggtggacgtgcgctacaggagaaggatgacttcagttggaggctgaggaccaacttctggggcacgagtaaccatttcgtttgcacgatgaaatgggacaaaaagcggaagcgcttcgacgccttcaagattccgagagacgttcaacggtgtggtcctttccggaagtgctcatggctggtgagggaggatgggttttatttcagcaacgatgaagtaaactggaaaaaggacttttcatggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

141

Amino Acids

16.65

Weight (kDa)

9.06

Isoelectric Point (pI)

30.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012901)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24060
fragaria_vesca FvH4_4g05670
malus_domestica MD13G1228600.v1.1 MD16G1234100.v1.1
prunus_persica Prupe.1G058400_v2.0.a1
pyrus_communis pycom13g20090
rosa_chinensis RchiOBHm_Chr4g0396841
rosa_laevigata RLG00000009500
rosa_multiflora Rmu_sc0000487.1_g000063
rosa_roxburghii Rroxscaffold_5G00341700
rosa_rugosa Rorug03G0347300
rosa_samantha Rh4AG072200 Rh4AG073000 Rh4AG074600 Rh4BG070200 Rh4CG078600 Rh4DG067900
rosa_wichuraiana Rw4G005950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 107
AccB7I CCANNNNNTGG 1 cut(s) 237
AccIII TCCGGA 1 cut(s) 342
AciI CCGC 2 cut(s) 143, 286
AcuI CTGAAG 1 cut(s) 196
AcyI GRCGYC 1 cut(s) 300
AfeI AGCGCT 1 cut(s) 293
AfiI CCNNNNNNNGG 2 cut(s) 145, 237
AgsI TTSAA 2 cut(s) 307, 326
AjiI CACGTC 1 cut(s) 188
Alw21I GWGCWC 1 cut(s) 353
Alw26I GTCTC 2 cut(s) 66, 312
Aor13HI TCCGGA 1 cut(s) 342
Aor51HI AGCGCT 1 cut(s) 293
AoxI GGCC 1 cut(s) 34
ArsI GACNNNNNNTTYG 2 cut(s) 119, 151
Asp700I GAANNNNTTC 1 cut(s) 293
AspLEI GCGC 2 cut(s) 193, 294
AspS9I GGNCC 2 cut(s) 228, 335
AsuHPI GGTGA 1 cut(s) 373
AvaII GGWCC 2 cut(s) 228, 335
BaeGI GKGCMC 2 cut(s) 92, 245
BauI CACGAG 1 cut(s) 244
Bbv12I GWGCWC 1 cut(s) 353
BbvCI CCTCAGC 1 cut(s) 224
BccI CCATC 1 cut(s) 365
BceAI ACGGC 1 cut(s) 133
BcoDI GTCTC 2 cut(s) 66, 312
BfmI CTRYAG 1 cut(s) 194
BfoI RGCGCY 1 cut(s) 295
BisI GCNGC 1 cut(s) 143
BlsI GCNGC 1 cut(s) 144
Bme18I GGWCC 2 cut(s) 228, 335
BmgBI CACGTC 1 cut(s) 188
BmgT120I GGNCC 2 cut(s) 228, 335
BmiI GGNNCC 1 cut(s) 72
BmsI GCATC 1 cut(s) 50
Bpu10I CCTNAGC 1 cut(s) 224
BsaHI GRCGYC 1 cut(s) 300
BsaWI WCCGGW 1 cut(s) 342
BsaXI ACNNNNNCTCC 2 cut(s) 359, 389
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 237
Bse1I ACTGG 1 cut(s) 407
BseAI TCCGGA 1 cut(s) 342
BseGI GGATG 3 cut(s) 41, 211, 376
BseLI CCNNNNNNNGG 2 cut(s) 145, 237
BseMII CTCAG 1 cut(s) 215
BseNI ACTGG 1 cut(s) 407
BseRI GAGGAG 1 cut(s) 14
BseSI GKGCMC 2 cut(s) 92, 245
BseYI CCCAGC 1 cut(s) 85
BshFI GGCC 1 cut(s) 36
BsiHKAI GWGCWC 1 cut(s) 353
BsiSI CCGG 1 cut(s) 343
BslFI GGGAC 2 cut(s) 121, 290
BslI CCNNNNNNNGG 2 cut(s) 145, 237
BsmAI GTCTC 2 cut(s) 66, 312
BsmBI CGTCTC 1 cut(s) 312
BsmFI GGGAC 2 cut(s) 121, 290
BsnI GGCC 1 cut(s) 36
Bsp1286I GDGCHC 3 cut(s) 92, 245, 353
Bsp13I TCCGGA 1 cut(s) 342
Bsp143I GATC 2 cut(s) 51, 175
BspACI CCGC 2 cut(s) 143, 286
BspANI GGCC 1 cut(s) 36
BspCNI CTCAG 1 cut(s) 216
BspEI TCCGGA 1 cut(s) 342
BspLI GGNNCC 1 cut(s) 72
BsrI ACTGG 1 cut(s) 407
BssMI GATC 2 cut(s) 51, 175
BssNI GRCGYC 1 cut(s) 300
BssSI CACGAG 1 cut(s) 244
Bst2BI CACGAG 1 cut(s) 244
Bst4CI ACNGT 1 cut(s) 330
BstACI GRCGYC 1 cut(s) 300
BstDEI CTNAG 1 cut(s) 224
BstF5I GGATG 3 cut(s) 41, 211, 376
BstH2I RGCGCY 1 cut(s) 295
BstHHI GCGC 2 cut(s) 193, 294
BstKTI GATC 2 cut(s) 54, 178
BstMAI GTCTC 2 cut(s) 66, 312
BstMBI GATC 2 cut(s) 51, 175
BstSFI CTRYAG 1 cut(s) 194
BstSLI GKGCMC 2 cut(s) 92, 245
BsuRI GGCC 1 cut(s) 36
BtrI CACGTC 1 cut(s) 188
BtsCI GGATG 3 cut(s) 41, 211, 376
BtsIMutI CAGTG 1 cut(s) 90
CfoI GCGC 2 cut(s) 193, 294
Cfr13I GGNCC 2 cut(s) 228, 335
CseI GACGC 1 cut(s) 308
CviAII CATG 2 cut(s) 354, 420
CviJI RGCY 4 cut(s) 36, 120, 223, 358
CviKI_1 RGCY 4 cut(s) 36, 120, 223, 358
DdeI CTNAG 1 cut(s) 224
DpnI GATC 2 cut(s) 53, 177
DpnII GATC 2 cut(s) 51, 175
DrdI GACNNNNNNGTC 1 cut(s) 107
DseDI GACNNNNNNGTC 1 cut(s) 107
Eco47I GGWCC 2 cut(s) 228, 335
Eco47III AGCGCT 1 cut(s) 293
Eco57I CTGAAG 1 cut(s) 196
Esp3I CGTCTC 1 cut(s) 312
FaeI CATG 2 cut(s) 357, 423
FaiI YATR 6 cut(s) 29, 31, 59, 99, 355, 421
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FaqI GGGAC 2 cut(s) 121, 290
FatI CATG 2 cut(s) 353, 419
FauNDI CATATG 1 cut(s) 29
Fnu4HI GCNGC 1 cut(s) 143
FokI GGATG 3 cut(s) 28, 218, 383
Fsp4HI GCNGC 1 cut(s) 143
GlaI GCGC 2 cut(s) 192, 293
GluI GCNGC 1 cut(s) 143
GsaI CCCAGC 1 cut(s) 89
HaeII RGCGCY 1 cut(s) 295
HaeIII GGCC 1 cut(s) 36
HapII CCGG 1 cut(s) 343
HgaI GACGC 1 cut(s) 308
HhaI GCGC 2 cut(s) 193, 294
Hin1I GRCGYC 1 cut(s) 300
Hin1II CATG 2 cut(s) 357, 423
Hin6I GCGC 2 cut(s) 191, 292
HinP1I GCGC 2 cut(s) 191, 292
HinfI GANTC 2 cut(s) 108, 310
HpaII CCGG 1 cut(s) 343
HphI GGTGA 1 cut(s) 373
Hpy166II GTNNAC 2 cut(s) 185, 400
Hpy188I TCNGA 1 cut(s) 315
Hpy188III TCNNGA 3 cut(s) 49, 307, 343
Hpy8I GTNNAC 2 cut(s) 185, 400
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 3 cut(s) 55, 196, 313
HpyCH4III ACNGT 1 cut(s) 330
HpyCH4IV ACGT 3 cut(s) 102, 187, 321
HpyCH4V TGCA 1 cut(s) 264
HpyF3I CTNAG 1 cut(s) 224
HpySE526I ACGT 3 cut(s) 102, 187, 321
Hsp92I GRCGYC 1 cut(s) 300
Hsp92II CATG 2 cut(s) 357, 423
HspAI GCGC 2 cut(s) 191, 292
Kpn2I TCCGGA 1 cut(s) 342
Kzo9I GATC 2 cut(s) 51, 175
LweI GCATC 1 cut(s) 50
MaeII ACGT 3 cut(s) 102, 187, 321
MaeIII GTNAC 1 cut(s) 248
MalI GATC 2 cut(s) 53, 177
MboI GATC 2 cut(s) 51, 175
MhlI GDGCHC 3 cut(s) 92, 245, 353
MlyI GAGTC 1 cut(s) 117
MmeI TCCRAC 2 cut(s) 48, 197
MnlI CCTC 6 cut(s) 35, 47, 213, 219, 357, 361
MroI TCCGGA 1 cut(s) 342
MroXI GAANNNNTTC 1 cut(s) 293
MspA1I CMGCKG 1 cut(s) 145
MspI CCGG 1 cut(s) 343
NdeI CATATG 1 cut(s) 29
NdeII GATC 2 cut(s) 51, 175
NlaIII CATG 2 cut(s) 357, 423
NlaIV GGNNCC 1 cut(s) 72
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 293
PfeI GAWTC 1 cut(s) 310
PflMI CCANNNNNTGG 1 cut(s) 237
PkrI GCNGC 1 cut(s) 144
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 72
PspPI GGNCC 2 cut(s) 228, 335
SatI GCNGC 1 cut(s) 143
Sau3AI GATC 2 cut(s) 51, 175
Sau96I GGNCC 2 cut(s) 228, 335
SchI GAGTC 1 cut(s) 117
SduI GDGCHC 3 cut(s) 92, 245, 353
SetI ASST 3 cut(s) 105, 190, 324
SfaNI GCATC 1 cut(s) 50
SfcI CTRYAG 1 cut(s) 194
SinI GGWCC 2 cut(s) 228, 335
SsiI CCGC 2 cut(s) 143, 286
TaaI ACNGT 1 cut(s) 330
TaiI ACGT 3 cut(s) 105, 190, 324
TaqI TCGA 3 cut(s) 106, 164, 297
TauI GCSGC 1 cut(s) 145
TfiI GAWTC 1 cut(s) 310
TscAI CASTG 1 cut(s) 97
TspDTI ATGAA 5 cut(s) 17, 150, 284, 408, 408
TspRI CASTG 1 cut(s) 97
Van91I CCANNNNNTGG 1 cut(s) 237
VpaK11BI GGWCC 2 cut(s) 228, 335
XmnI GAANNNNTTC 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.