Prupe.1G058400_v2.0.a1

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012901
Physical Location & Seq
Reverse (-)
4147352 .. 4148590
1239 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G058400.1

Sequence Viewer

Length: 426 bp
ATGAAGATCCTCACCAGCATTCTCCTCATCTGTGGCCTAGCGTCCTTCGTGATCTTCATGTCAATACTACAACCCCAGAACTTCTACGGCATCGAATACGATATTCGAGTCATCAACGGCTTCACAAACAACTCCTCCCTGCCTCTTGTCATCTGGTGTGCATCAGAACACAGTGATCTTGGTGGACGTGCGCTTCAGGAGCATGATGACTTCAGCTGGAGTCTGAGGACCAATTTCTGGGGCACCAACGACCATTTCAAATGTACAATGAAATGGGACCGAACAAGAAGGAGCTTTGAGGCCTTTAAGGCTCCCAGGGATACACAGAGGTGCGGTCCTTTTAGGAAGTGTTCTTGGTTGGTCAGAGAAGATGGGTTCTATTTCAGCAACGATGAAGTAAACTGGAGAAAAGATTTTTCATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

142

Amino Acids

16.68

Weight (kDa)

7.65

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012901)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24060
fragaria_vesca FvH4_4g05670
malus_domestica MD13G1228600.v1.1 MD16G1234100.v1.1
prunus_persica Prupe.1G058400_v2.0.a1
pyrus_communis pycom13g20090
rosa_chinensis RchiOBHm_Chr4g0396841
rosa_laevigata RLG00000009500
rosa_multiflora Rmu_sc0000487.1_g000063
rosa_roxburghii Rroxscaffold_5G00341700
rosa_rugosa Rorug03G0347300
rosa_samantha Rh4AG072200 Rh4AG073000 Rh4AG074600 Rh4BG070200 Rh4CG078600 Rh4DG067900
rosa_wichuraiana Rw4G005950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 242
AccB7I CCANNNNNTGG 1 cut(s) 237
AciI CCGC 1 cut(s) 333
AcuI CTGAAG 2 cut(s) 179, 196
AfaI GTAC 1 cut(s) 265
AfiI CCNNNNNNNGG 1 cut(s) 237
AgsI TTSAA 1 cut(s) 259
AjiI CACGTC 1 cut(s) 188
AjnI CCWGG 1 cut(s) 314
AjuI GAANNNNNNNTTGG 2 cut(s) 239, 271
AleI CACNNNNGTG 1 cut(s) 328
AluBI AGCT 2 cut(s) 216, 294
AluI AGCT 2 cut(s) 216, 294
AoxI GGCC 2 cut(s) 34, 300
AspLEI GCGC 1 cut(s) 193
AspS9I GGNCC 3 cut(s) 228, 277, 335
AsuHPI GGTGA 1 cut(s) 4
AvaII GGWCC 3 cut(s) 228, 277, 335
BaeGI GKGCMC 1 cut(s) 245
BanI GGYRCC 1 cut(s) 242
BccI CCATC 1 cut(s) 365
BceAI ACGGC 2 cut(s) 103, 133
BciT130I CCWGG 1 cut(s) 316
BciVI GTATCC 1 cut(s) 313
BfaI CTAG 1 cut(s) 38
BfuI GTATCC 1 cut(s) 313
BglI GCCNNNNNGGC 1 cut(s) 308
Bme1390I CCNGG 1 cut(s) 316
Bme18I GGWCC 3 cut(s) 228, 277, 335
BmgBI CACGTC 1 cut(s) 188
BmgT120I GGNCC 3 cut(s) 228, 277, 335
BmiI GGNNCC 3 cut(s) 244, 278, 312
BmrFI CCNGG 1 cut(s) 316
BmsI GCATC 2 cut(s) 99, 170
BpmI CTGGAG 2 cut(s) 238, 424
BsaJI CCNNGG 2 cut(s) 314, 315
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 1 cut(s) 237
Bse1I ACTGG 1 cut(s) 407
BseBI CCWGG 1 cut(s) 316
BseDI CCNNGG 2 cut(s) 314, 315
BseLI CCNNNNNNNGG 1 cut(s) 237
BseMII CTCAG 1 cut(s) 215
BseNI ACTGG 1 cut(s) 407
BseRI GAGGAG 2 cut(s) 14, 124
BseSI GKGCMC 1 cut(s) 245
BshFI GGCC 2 cut(s) 36, 302
BshNI GGYRCC 1 cut(s) 242
BslFI GGGAC 1 cut(s) 290
BslI CCNNNNNNNGG 1 cut(s) 237
BsmFI GGGAC 1 cut(s) 290
BsmI GAATGC 1 cut(s) 18
BsnI GGCC 2 cut(s) 36, 302
Bsp1286I GDGCHC 1 cut(s) 245
Bsp1407I TGTACA 1 cut(s) 263
Bsp143I GATC 3 cut(s) 6, 51, 175
BspACI CCGC 1 cut(s) 333
BspANI GGCC 2 cut(s) 36, 302
BspCNI CTCAG 1 cut(s) 216
BspLI GGNNCC 3 cut(s) 244, 278, 312
BspT107I GGYRCC 1 cut(s) 242
BsrGI TGTACA 1 cut(s) 263
BsrI ACTGG 1 cut(s) 407
BssECI CCNNGG 2 cut(s) 314, 315
BssMI GATC 3 cut(s) 6, 51, 175
Bst2UI CCWGG 1 cut(s) 316
Bst4CI ACNGT 1 cut(s) 173
BstAUI TGTACA 1 cut(s) 263
BstDEI CTNAG 1 cut(s) 224
BstHHI GCGC 1 cut(s) 193
BstKTI GATC 3 cut(s) 9, 54, 178
BstMBI GATC 3 cut(s) 6, 51, 175
BstMWI GCNNNNNNNGC 2 cut(s) 199, 308
BstNI CCWGG 1 cut(s) 316
BstSCI CCNGG 1 cut(s) 314
BstSLI GKGCMC 1 cut(s) 245
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BsuI GTATCC 1 cut(s) 313
BsuRI GGCC 2 cut(s) 36, 302
BtrI CACGTC 1 cut(s) 188
BtsIMutI CAGTG 1 cut(s) 178
CfoI GCGC 1 cut(s) 193
Cfr13I GGNCC 3 cut(s) 228, 277, 335
CseI GACGC 1 cut(s) 30
Csp6I GTAC 1 cut(s) 264
CviAII CATG 3 cut(s) 58, 203, 420
CviJI RGCY 6 cut(s) 36, 120, 216, 294, 302, 311
CviKI_1 RGCY 6 cut(s) 36, 120, 216, 294, 302, 311
CviQI GTAC 1 cut(s) 264
DdeI CTNAG 1 cut(s) 224
DpnI GATC 3 cut(s) 8, 53, 177
DpnII GATC 3 cut(s) 6, 51, 175
Eco147I AGGCCT 1 cut(s) 302
Eco47I GGWCC 3 cut(s) 228, 277, 335
Eco57I CTGAAG 2 cut(s) 179, 196
EcoRII CCWGG 1 cut(s) 314
FaeI CATG 3 cut(s) 61, 206, 423
FaiI YATR 3 cut(s) 59, 204, 421
FaqI GGGAC 1 cut(s) 290
FatI CATG 3 cut(s) 57, 202, 419
FspBI CTAG 1 cut(s) 38
GlaI GCGC 1 cut(s) 192
GsuI CTGGAG 2 cut(s) 238, 424
HaeIII GGCC 2 cut(s) 36, 302
HgaI GACGC 1 cut(s) 30
HhaI GCGC 1 cut(s) 193
Hin1II CATG 3 cut(s) 61, 206, 423
Hin6I GCGC 1 cut(s) 191
HinP1I GCGC 1 cut(s) 191
HinfI GANTC 2 cut(s) 108, 220
HphI GGTGA 1 cut(s) 4
Hpy166II GTNNAC 2 cut(s) 185, 400
Hpy188I TCNGA 3 cut(s) 166, 225, 365
Hpy188III TCNNGA 2 cut(s) 49, 197
Hpy8I GTNNAC 2 cut(s) 185, 400
HpyAV CCTTC 2 cut(s) 55, 282
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4IV ACGT 1 cut(s) 187
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 2 cut(s) 199, 308
HpyF3I CTNAG 1 cut(s) 224
HpySE526I ACGT 1 cut(s) 187
Hsp92II CATG 3 cut(s) 61, 206, 423
HspAI GCGC 1 cut(s) 191
Kzo9I GATC 3 cut(s) 6, 51, 175
LmnI GCTCC 3 cut(s) 199, 291, 316
LweI GCATC 2 cut(s) 99, 170
MaeI CTAG 1 cut(s) 38
MaeII ACGT 1 cut(s) 187
MalI GATC 3 cut(s) 8, 53, 177
MboI GATC 3 cut(s) 6, 51, 175
MboII GAAGA 3 cut(s) 16, 46, 380
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 1 cut(s) 245
MluCI AATT 1 cut(s) 232
MlyI GAGTC 2 cut(s) 117, 229
MnlI CCTC 7 cut(s) 20, 35, 145, 153, 219, 292, 321
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 1 cut(s) 328
MspA1I CMGCKG 1 cut(s) 216
MspR9I CCNGG 1 cut(s) 316
Mva1269I GAATGC 1 cut(s) 18
MvaI CCWGG 1 cut(s) 316
MwoI GCNNNNNNNGC 2 cut(s) 199, 308
NdeII GATC 3 cut(s) 6, 51, 175
NlaIII CATG 3 cut(s) 61, 206, 423
NlaIV GGNNCC 3 cut(s) 244, 278, 312
OliI CACNNNNGTG 1 cut(s) 328
PasI CCCWGGG 1 cut(s) 315
PceI AGGCCT 1 cut(s) 302
PctI GAATGC 1 cut(s) 18
PflMI CCANNNNNTGG 1 cut(s) 237
PleI GAGTC 2 cut(s) 116, 228
PpsI GAGTC 2 cut(s) 116, 228
Psp6I CCWGG 1 cut(s) 314
PspGI CCWGG 1 cut(s) 314
PspN4I GGNNCC 3 cut(s) 244, 278, 312
PspPI GGNCC 3 cut(s) 228, 277, 335
PsuI RGATCY 1 cut(s) 6
PvuII CAGCTG 1 cut(s) 216
RsaI GTAC 1 cut(s) 265
RsaNI GTAC 1 cut(s) 264
RseI CAYNNNNRTG 1 cut(s) 328
SaqAI TTAA 1 cut(s) 306
Sau3AI GATC 3 cut(s) 6, 51, 175
Sau96I GGNCC 3 cut(s) 228, 277, 335
SchI GAGTC 2 cut(s) 117, 229
ScrFI CCNGG 1 cut(s) 316
SduI GDGCHC 1 cut(s) 245
SetI ASST 4 cut(s) 190, 218, 296, 332
SfaNI GCATC 2 cut(s) 99, 170
SinI GGWCC 3 cut(s) 228, 277, 335
SmiMI CAYNNNNRTG 1 cut(s) 328
Sse9I AATT 1 cut(s) 232
SseBI AGGCCT 1 cut(s) 302
SsiI CCGC 1 cut(s) 333
SspMI CTAG 1 cut(s) 38
StuI AGGCCT 1 cut(s) 302
StyD4I CCNGG 1 cut(s) 314
TaaI ACNGT 1 cut(s) 173
TaiI ACGT 1 cut(s) 190
TaqI TCGA 2 cut(s) 93, 106
TaqII GACCGA 1 cut(s) 294
TasI AATT 1 cut(s) 232
TatI WGTACW 1 cut(s) 263
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 1 cut(s) 178
TspDTI ATGAA 5 cut(s) 17, 46, 284, 408, 408
TspRI CASTG 1 cut(s) 178
Van91I CCANNNNNTGG 1 cut(s) 237
VpaK11BI GGWCC 3 cut(s) 228, 277, 335
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.