AT3G24450

Heavy-metal-associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013076
Physical Location & Seq
Reverse (-)
8880012 .. 8881779
1768 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G24450.1

Sequence Viewer

Length: 423 bp
ATGGGAAAGCTCCAGAAGATTGGGAGAGTATGGGATTGTCTTTTTCTTCCGACAAATCAGTGTTCATGTTTTTGTCTAAACACTCTAGGAGATGAAGAAGAAGAGTTTGAGAAAGAGCCATTGATAGATTCTTCAACAGAGAAATCTGGGAAAGTCATGAGGTTAAAAGATGTTGTAGCTGCTGATCATCGTCAGACTCTTGCCTTTCATCTTAAGCCTAAGATAGTGGAGCTAAAGGTGTCAATGCATTGCTACGGATGTGCGAAGAAAGTCGAGAAGCATATTTCTAAATTAGACGGAGTGACATGGTACAAAGTGGAGCTAGAGAGCAAGAAGGTGGTGGTGAAAGGGAACATATTGCCGGTAGATGTGTTAGAGAGTATTTGTAAAGTCAAGAATGCTCAGCTTTGGTCTTCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04978 map04978
Pfam Domains
Protein Families
HMA

Protein Analysis

140

Amino Acids

15.86

Weight (kDa)

8.43

Isoelectric Point (pI)

36.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 79 - 128 7.5e-12 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013076)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24450
fragaria_vesca FvH4_1g05260
malus_domestica MD02G1063000.v1.1 MD15G1188800.v1.1
prunus_persica Prupe.7G227800_v2.0.a1
pyrus_communis pycom02g04280 pycom15g16920
rosa_chinensis RchiOBHm_Chr2g0090981
rosa_laevigata RLG00000016163
rosa_multiflora Rmu_sc0000792.1_g000021 Rmu_sc0003305.1_g000002
rosa_roxburghii Rroxscaffold_2G00150710
rosa_rugosa Rorug02G0011400
rosa_samantha Rh2AG057700 Rh2BG055900 Rh2CG058200 Rh2DG057300
rosa_wichuraiana Rw2G005180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 311
AflII CTTAAG 1 cut(s) 212
AgsI TTSAA 1 cut(s) 135
AluBI AGCT 5 cut(s) 10, 179, 232, 322, 406
AluI AGCT 5 cut(s) 10, 179, 232, 322, 406
ApeKI GCWGC 1 cut(s) 179
AsuHPI GGTGA 1 cut(s) 355
BbsI GAAGAC 1 cut(s) 405
BbvI GCAGC 1 cut(s) 166
BclI TGATCA 1 cut(s) 184
BfaI CTAG 2 cut(s) 86, 323
BfrI CTTAAG 1 cut(s) 212
BisI GCNGC 1 cut(s) 180
BlpI GCTNAGC 1 cut(s) 402
BlsI GCNGC 1 cut(s) 181
BpiI GAAGAC 1 cut(s) 405
Bpu1102I GCTNAGC 1 cut(s) 402
Bse118I RCCGGY 1 cut(s) 361
Bse3DI GCAATG 1 cut(s) 247
BseGI GGATG 1 cut(s) 263
BseMI GCAATG 1 cut(s) 247
BseMII CTCAG 1 cut(s) 416
BseXI GCAGC 1 cut(s) 166
BsiSI CCGG 1 cut(s) 362
BsmI GAATGC 1 cut(s) 403
Bsp143I GATC 1 cut(s) 184
Bsp1720I GCTNAGC 1 cut(s) 402
BspCNI CTCAG 1 cut(s) 415
BspHI TCATGA 1 cut(s) 156
BspTI CTTAAG 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 247
BsrFI RCCGGY 1 cut(s) 361
BssAI RCCGGY 1 cut(s) 361
BssMI GATC 1 cut(s) 184
Bst6I CTCTTC 1 cut(s) 96
BstAFI CTTAAG 1 cut(s) 212
BstDEI CTNAG 2 cut(s) 219, 402
BstF5I GGATG 1 cut(s) 263
BstKTI GATC 1 cut(s) 187
BstMBI GATC 1 cut(s) 184
BstV1I GCAGC 1 cut(s) 166
BstV2I GAAGAC 1 cut(s) 405
BstXI CCANNNNNNTGG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 263
BtsIMutI CAGTG 1 cut(s) 65
CciI TCATGA 1 cut(s) 156
Cfr10I RCCGGY 1 cut(s) 361
Csp6I GTAC 1 cut(s) 310
CviAII CATG 3 cut(s) 66, 157, 306
CviJI RGCY 7 cut(s) 10, 118, 179, 217, 232, 322, 406
CviKI_1 RGCY 7 cut(s) 10, 118, 179, 217, 232, 322, 406
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 2 cut(s) 219, 402
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
EcoT22I ATGCAT 1 cut(s) 249
FaeI CATG 3 cut(s) 69, 160, 309
FaiI YATR 6 cut(s) 31, 67, 158, 282, 307, 356
FatI CATG 3 cut(s) 65, 156, 305
FbaI TGATCA 1 cut(s) 184
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 1 cut(s) 270
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 2 cut(s) 86, 323
GluI GCNGC 1 cut(s) 180
HapII CCGG 1 cut(s) 362
Hin1II CATG 3 cut(s) 69, 160, 309
HinfI GANTC 2 cut(s) 128, 196
HpaII CCGG 1 cut(s) 362
HphI GGTGA 1 cut(s) 355
Hpy188I TCNGA 2 cut(s) 51, 195
Hpy188III TCNNGA 4 cut(s) 13, 157, 274, 394
HpyAV CCTTC 1 cut(s) 328
HpyCH4V TGCA 1 cut(s) 247
HpyF3I CTNAG 2 cut(s) 219, 402
Hsp92II CATG 3 cut(s) 69, 160, 309
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 1 cut(s) 184
LmnI GCTCC 3 cut(s) 15, 229, 319
LpnPI CCDG 3 cut(s) 26, 132, 375
Lsp1109I GCAGC 1 cut(s) 166
MaeI CTAG 2 cut(s) 86, 323
MaeIII GTNAC 1 cut(s) 301
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 8 cut(s) 28, 38, 107, 110, 113, 123, 277, 405
MluCI AATT 1 cut(s) 290
MlyI GAGTC 1 cut(s) 190
MmeI TCCRAC 1 cut(s) 74
MnlI CCTC 1 cut(s) 153
Mph1103I ATGCAT 1 cut(s) 249
MseI TTAA 2 cut(s) 164, 213
MspCI CTTAAG 1 cut(s) 212
MspI CCGG 1 cut(s) 362
Mva1269I GAATGC 1 cut(s) 403
NdeII GATC 1 cut(s) 184
NlaIII CATG 3 cut(s) 69, 160, 309
NmuCI GTSAC 1 cut(s) 301
NsiI ATGCAT 1 cut(s) 249
PagI TCATGA 1 cut(s) 156
PctI GAATGC 1 cut(s) 403
PfeI GAWTC 1 cut(s) 128
PkrI GCNGC 1 cut(s) 181
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
SaqAI TTAA 2 cut(s) 164, 213
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 1 cut(s) 184
SchI GAGTC 1 cut(s) 190
SetI ASST 8 cut(s) 12, 164, 181, 234, 240, 324, 339, 408
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 1 cut(s) 290
SspMI CTAG 2 cut(s) 86, 323
TaqI TCGA 1 cut(s) 273
TasI AATT 1 cut(s) 290
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 2 cut(s) 164, 213
Tru9I TTAA 2 cut(s) 164, 213
TscAI CASTG 1 cut(s) 65
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 3 cut(s) 54, 108, 197
TspGWI ACGGA 2 cut(s) 270, 312
TspRI CASTG 1 cut(s) 65
Vha464I CTTAAG 1 cut(s) 212
XspI CTAG 2 cut(s) 86, 323
Zsp2I ATGCAT 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.