Prupe.7G227800_v2.0.a1

Heavy-metal-associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0013076
Physical Location & Seq
Reverse (-)
20114217 .. 20118312
4096 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G227800.1

Sequence Viewer

Length: 408 bp
ATGGGGAAGCTTAGTTTGGGCAGGGTGCTAGACAGGTTTTGCCTTTCTTCTACTGGCTCAAGTTCTTGTTTCTGCATGAACTCCATGGAAAACGAAGACGAGTTTGAAAGAAGTCCATTGGTAACCGGTGAGAAAGATGAGTTTCTGAGACTGAAGGATGTTGTTGCTGGAAAACAGACATTGGCGTTTCAATTGAAGCCCAAGATGGTGATGTTAAGGGTCTCCATGCACTGCAATGGCTGTGCCAGAAAAGTTGAGAAACATATCTCAAAGATTGAAGGAGTGACATCGTACAAAGTAGACTTGGAAAGCAAGATGGTGGTTGTGATTGGAGATGTTCTTCCTCGCGAAGTGCTCGAGAGTGTCTCGAAGGTTAAAAATACAGAGATTTGGAACTCCCCATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04978 map04978
Pfam Domains
Protein Families
HMA

Protein Analysis

136

Amino Acids

15.12

Weight (kDa)

8.21

Isoelectric Point (pI)

45.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013076)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24450
fragaria_vesca FvH4_1g05260
malus_domestica MD02G1063000.v1.1 MD15G1188800.v1.1
prunus_persica Prupe.7G227800_v2.0.a1
pyrus_communis pycom02g04280 pycom15g16920
rosa_chinensis RchiOBHm_Chr2g0090981
rosa_laevigata RLG00000016163
rosa_multiflora Rmu_sc0000792.1_g000021 Rmu_sc0003305.1_g000002
rosa_roxburghii Rroxscaffold_2G00150710
rosa_rugosa Rorug02G0011400
rosa_samantha Rh2AG057700 Rh2BG055900 Rh2CG058200 Rh2DG057300
rosa_wichuraiana Rw2G005180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 300
AccII CGCG 1 cut(s) 348
AcuI CTGAAG 1 cut(s) 173
AfaI GTAC 1 cut(s) 293
AgeI ACCGGT 1 cut(s) 125
AgsI TTSAA 4 cut(s) 107, 191, 196, 278
AjuI GAANNNNNNNTTGG 1 cut(s) 31
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 3 cut(s) 142, 226, 370
Ama87I CYCGRG 1 cut(s) 356
AsiGI ACCGGT 1 cut(s) 125
AsuHPI GGTGA 2 cut(s) 140, 220
AvaI CYCGRG 1 cut(s) 356
BbsI GAAGAC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 357
BccI CCATC 2 cut(s) 199, 310
BcoDI GTCTC 3 cut(s) 142, 226, 370
BfaI CTAG 1 cut(s) 29
BmeT110I CYCGRG 1 cut(s) 356
BpiI GAAGAC 1 cut(s) 102
BplI GAGNNNNNCTC 2 cut(s) 350, 382
BpuEI CTTGAG 1 cut(s) 43
BsaI GGTCTC 1 cut(s) 226
BsaJI CCNNGG 1 cut(s) 84
BsaWI WCCGGW 1 cut(s) 125
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 58
Bse3DI GCAATG 1 cut(s) 241
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 163
BseMI GCAATG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 137
BseNI ACTGG 1 cut(s) 58
Bsh1236I CGCG 1 cut(s) 348
BshTI ACCGGT 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 357
BsiHKCI CYCGRG 1 cut(s) 356
BsiSI CCGG 1 cut(s) 126
BsmAI GTCTC 3 cut(s) 142, 226, 370
Bso31I GGTCTC 1 cut(s) 226
BsoBI CYCGRG 1 cut(s) 356
Bsp1286I GDGCHC 1 cut(s) 357
Bsp19I CCATGG 1 cut(s) 84
Bsp68I TCGCGA 1 cut(s) 348
BspCNI CTCAG 1 cut(s) 138
BspFNI CGCG 1 cut(s) 348
BspTNI GGTCTC 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 241
BsrFI RCCGGY 1 cut(s) 125
BsrI ACTGG 1 cut(s) 58
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 84
BstDEI CTNAG 2 cut(s) 11, 146
BstDSI CCRYGG 1 cut(s) 84
BstEII GGTNACC 1 cut(s) 121
BstF5I GGATG 1 cut(s) 163
BstFNI CGCG 1 cut(s) 348
BstMAI GTCTC 3 cut(s) 142, 226, 370
BstPI GGTNACC 1 cut(s) 121
BstUI CGCG 1 cut(s) 348
BstV2I GAAGAC 1 cut(s) 102
BtgI CCRYGG 1 cut(s) 84
BtsCI GGATG 1 cut(s) 163
BtsI GCAGTG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 229
BtuMI TCGCGA 1 cut(s) 348
Cfr10I RCCGGY 1 cut(s) 125
Csp6I GTAC 1 cut(s) 292
CspAI ACCGGT 1 cut(s) 125
CviAII CATG 4 cut(s) 76, 85, 226, 402
CviJI RGCY 4 cut(s) 10, 57, 199, 240
CviKI_1 RGCY 4 cut(s) 10, 57, 199, 240
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 2 cut(s) 11, 146
Eco130I CCWWGG 1 cut(s) 84
Eco31I GGTCTC 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 173
Eco88I CYCGRG 1 cut(s) 356
Eco91I GGTNACC 1 cut(s) 121
EcoO65I GGTNACC 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 4 cut(s) 79, 88, 229, 405
FaiI YATR 5 cut(s) 77, 86, 227, 264, 403
FatI CATG 4 cut(s) 75, 84, 225, 401
FblI GTMKAC 1 cut(s) 300
FokI GGATG 1 cut(s) 170
FspBI CTAG 1 cut(s) 29
HapII CCGG 1 cut(s) 126
Hin1II CATG 4 cut(s) 79, 88, 229, 405
HindIII AAGCTT 1 cut(s) 8
HpaII CCGG 1 cut(s) 126
HphI GGTGA 2 cut(s) 140, 220
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 1 cut(s) 147
Hpy188III TCNNGA 3 cut(s) 347, 358, 367
Hpy8I GTNNAC 1 cut(s) 301
HpyAV CCTTC 3 cut(s) 148, 272, 364
HpyCH4V TGCA 3 cut(s) 75, 229, 234
HpyF3I CTNAG 2 cut(s) 11, 146
Hsp92II CATG 4 cut(s) 79, 88, 229, 405
LpnPI CCDG 6 cut(s) 7, 19, 39, 139, 153, 259
MaeI CTAG 1 cut(s) 29
MaeIII GTNAC 2 cut(s) 121, 283
MboII GAAGA 3 cut(s) 39, 107, 332
MfeI CAATTG 1 cut(s) 191
MhlI GDGCHC 1 cut(s) 357
MluCI AATT 1 cut(s) 191
MnlI CCTC 1 cut(s) 354
MseI TTAA 2 cut(s) 215, 375
MslI CAYNNNNRTG 1 cut(s) 234
MspI CCGG 1 cut(s) 126
MunI CAATTG 1 cut(s) 191
MvnI CGCG 1 cut(s) 348
NcoI CCATGG 1 cut(s) 84
NlaIII CATG 4 cut(s) 79, 88, 229, 405
NmuCI GTSAC 1 cut(s) 283
NruI TCGCGA 1 cut(s) 348
PaeR7I CTCGAG 1 cut(s) 356
PinAI ACCGGT 1 cut(s) 125
PspEI GGTNACC 1 cut(s) 121
RruI TCGCGA 1 cut(s) 348
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 1 cut(s) 234
SaqAI TTAA 2 cut(s) 215, 375
SduI GDGCHC 1 cut(s) 357
SetI ASST 3 cut(s) 12, 38, 375
Sfr274I CTCGAG 1 cut(s) 356
SlaI CTCGAG 1 cut(s) 356
SmiMI CAYNNNNRTG 1 cut(s) 234
SmlI CTYRAG 2 cut(s) 58, 356
SmoI CTYRAG 2 cut(s) 58, 356
Sse9I AATT 1 cut(s) 191
SspMI CTAG 1 cut(s) 29
StyI CCWWGG 1 cut(s) 84
TaqI TCGA 2 cut(s) 357, 368
TasI AATT 1 cut(s) 191
Tru1I TTAA 2 cut(s) 215, 375
Tru9I TTAA 2 cut(s) 215, 375
TscAI CASTG 1 cut(s) 236
TseFI GTSAC 1 cut(s) 283
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 1 cut(s) 92
TspRI CASTG 1 cut(s) 236
XhoI CTCGAG 1 cut(s) 356
XmiI GTMKAC 1 cut(s) 300
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.