AT3G24570

PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013374
Physical Location & Seq
Reverse (-)
8966521 .. 8968676
2156 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G24570.1

Sequence Viewer

Length: 708 bp
ATGTTGAAGCTTTGGAGATGGTACCAGCGATGCCTGACGGTTCATCCTGTGAAAACTCAGGTCATCAGTTCTGGATTTCTTTGGGGATTTGGCGATGTCACCGCTCAATACATCACTCATTCCACTGCGAAACGTCGTCTTCTTCGTCTCACCGAAACAAATAAAGATGCTGACGCAGATGCAGAAATTAAGGTCAAGTGGAAGCAAGATGCAGAATTCAAAGTCAACTGGAAGCGAGTAGCTATCACGAGCATGTTTGGATTTGGTTTTGTCGGACCTGTTGGCCACTTCTGGTACGAAGGCTTGGATAAATTCATAAAACTGAAGCTTCGATATGTACCAAAGTCAACACGTTTTGTAGCTGCAAAAGTTGCAATGGATGGTCTTATCTTTGGACCTGTAGATCTACTGGTGTTCTTCACATACATGGGATTCGCCACAGGAAAGAACACAGCTGAAGTGAAAGAAGGACTCAAGAGAGATTTTCTTCCGGCTCTAGCTCTTGAAGGCGGAGCATGGCCACTTCTTCAGATTGCAAACTTCAGATATGTTCCCGTGCAATACCAGTTGCTTTACGTCAACATCTTTTGCCTAGTAGACAGTGCCTTCCTCTCATGGGTCGAGCAACAGAAGGACGCAGCTTGGAAGCAATGGTTTACTTCATCATTTCAACCATTAAAAGAACGAGGTGGCCAAGGCGGAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

235

Amino Acids

26.95

Weight (kDa)

9.63

Isoelectric Point (pI)

31.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 145 - 205 5.4e-17 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013374)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24570 AT3G24570
fragaria_vesca FvH4_1g04560
malus_domestica MD02G1045400.v1.1
prunus_persica Prupe.7G232500_v2.0.a1 Prupe.7G232500_v2.0.a1
pyrus_communis pycom02g03780
rosa_chinensis RchiOBHm_Chr2g0090261
rosa_laevigata RLG00000016092
rosa_multiflora Rmu_co8416553.1_g000001 Rmu_sc0004966.1_g000009
rosa_roxburghii Rroxscaffold_2G00151340
rosa_rugosa Rorug02G0006000
rosa_samantha Rh2AG051900 Rh2BG050500 Rh2CG052700 Rh2DG051800
rosa_wichuraiana Rw2G004500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 21
AccB1I GGYRCC 1 cut(s) 21
AccBSI CCGCTC 1 cut(s) 104
AccI GTMKAC 1 cut(s) 597
AciI CCGC 3 cut(s) 102, 510, 699
AcoI YGGCCR 3 cut(s) 283, 518, 691
AcsI RAATTY 2 cut(s) 215, 311
AcuI CTGAAG 4 cut(s) 344, 477, 512, 526
AfaI GTAC 3 cut(s) 23, 296, 339
AfiI CCNNNNNNNGG 1 cut(s) 616
AflIII ACRYGT 1 cut(s) 350
AgsI TTSAA 4 cut(s) 7, 220, 506, 671
AluBI AGCT 7 cut(s) 10, 242, 328, 362, 455, 500, 641
AluI AGCT 7 cut(s) 10, 242, 328, 362, 455, 500, 641
Alw26I GTCTC 1 cut(s) 152
AoxI GGCC 3 cut(s) 283, 518, 691
ApeKI GCWGC 2 cut(s) 362, 638
ApoI RAATTY 2 cut(s) 215, 311
Asp718I GGTACC 1 cut(s) 21
AspS9I GGNCC 2 cut(s) 275, 395
AsuHPI GGTGA 2 cut(s) 91, 142
AvaII GGWCC 2 cut(s) 275, 395
BalI TGGCCA 3 cut(s) 285, 520, 693
BanI GGYRCC 1 cut(s) 21
BauI CACGAG 1 cut(s) 247
BbsI GAAGAC 1 cut(s) 131
BbvI GCAGC 2 cut(s) 349, 650
BccI CCATC 2 cut(s) 12, 374
BcoDI GTCTC 1 cut(s) 152
BfaI CTAG 2 cut(s) 497, 593
BfmI CTRYAG 1 cut(s) 399
BglII AGATCT 1 cut(s) 403
BisI GCNGC 2 cut(s) 363, 639
BlsI GCNGC 2 cut(s) 364, 640
Bme18I GGWCC 2 cut(s) 275, 395
BmgT120I GGNCC 2 cut(s) 275, 395
BmiI GGNNCC 1 cut(s) 23
BmsI GCATC 4 cut(s) 20, 157, 169, 199
BpiI GAAGAC 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 458
BsaJI CCNNGG 1 cut(s) 694
Bsc4I CCNNNNNNNGG 1 cut(s) 616
Bse1I ACTGG 3 cut(s) 233, 414, 565
Bse3DI GCAATG 2 cut(s) 381, 656
BseDI CCNNGG 1 cut(s) 694
BseGI GGATG 2 cut(s) 43, 385
BseLI CCNNNNNNNGG 1 cut(s) 616
BseMI GCAATG 2 cut(s) 381, 656
BseMII CTCAG 1 cut(s) 71
BseNI ACTGG 3 cut(s) 233, 414, 565
BseXI GCAGC 2 cut(s) 349, 650
BshFI GGCC 3 cut(s) 285, 520, 693
BshNI GGYRCC 1 cut(s) 21
BsiSI CCGG 1 cut(s) 491
BslI CCNNNNNNNGG 1 cut(s) 616
BsmAI GTCTC 1 cut(s) 152
BsmBI CGTCTC 1 cut(s) 152
BsnI GGCC 3 cut(s) 285, 520, 693
Bsp143I GATC 1 cut(s) 403
BspACI CCGC 3 cut(s) 102, 510, 699
BspANI GGCC 3 cut(s) 285, 520, 693
BspCNI CTCAG 1 cut(s) 70
BspLI GGNNCC 1 cut(s) 23
BspT107I GGYRCC 1 cut(s) 21
BsrBI CCGCTC 1 cut(s) 104
BsrDI GCAATG 2 cut(s) 381, 656
BsrI ACTGG 3 cut(s) 233, 414, 565
BssECI CCNNGG 1 cut(s) 694
BssMI GATC 1 cut(s) 403
BssSI CACGAG 1 cut(s) 247
BssT1I CCWWGG 1 cut(s) 694
Bst2BI CACGAG 1 cut(s) 247
Bst4CI ACNGT 2 cut(s) 40, 602
BstAPI GCANNNNNTGC 1 cut(s) 371
BstDEI CTNAG 1 cut(s) 57
BstF5I GGATG 2 cut(s) 43, 385
BstKTI GATC 1 cut(s) 406
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 1 cut(s) 403
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstNSI RCATGY 1 cut(s) 256
BstSFI CTRYAG 1 cut(s) 399
BstV1I GCAGC 2 cut(s) 349, 650
BstV2I GAAGAC 1 cut(s) 131
BstX2I RGATCY 1 cut(s) 403
BstYI RGATCY 1 cut(s) 403
BsuRI GGCC 3 cut(s) 285, 520, 693
BtgZI GCGATG 2 cut(s) 43, 108
BtsCI GGATG 2 cut(s) 43, 385
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 2 cut(s) 123, 607
Cfr13I GGNCC 2 cut(s) 275, 395
CseI GACGC 2 cut(s) 182, 644
Csp6I GTAC 3 cut(s) 22, 295, 338
CviAII CATG 4 cut(s) 253, 427, 516, 615
CviQI GTAC 3 cut(s) 22, 295, 338
DdeI CTNAG 1 cut(s) 57
DpnI GATC 1 cut(s) 405
DpnII GATC 1 cut(s) 403
EaeI YGGCCR 3 cut(s) 283, 518, 691
EciI GGCGGA 1 cut(s) 525
Eco130I CCWWGG 1 cut(s) 694
Eco47I GGWCC 2 cut(s) 275, 395
Eco57I CTGAAG 4 cut(s) 344, 477, 512, 526
EcoRI GAATTC 1 cut(s) 215
EcoT14I CCWWGG 1 cut(s) 694
ErhI CCWWGG 1 cut(s) 694
Esp3I CGTCTC 1 cut(s) 152
FaeI CATG 4 cut(s) 256, 430, 519, 618
FaiI YATR 9 cut(s) 254, 317, 336, 424, 428, 517, 549, 616, 706
FatI CATG 4 cut(s) 252, 426, 515, 614
FblI GTMKAC 1 cut(s) 597
Fnu4HI GCNGC 2 cut(s) 363, 639
FokI GGATG 2 cut(s) 30, 392
Fsp4HI GCNGC 2 cut(s) 363, 639
FspBI CTAG 2 cut(s) 497, 593
GluI GCNGC 2 cut(s) 363, 639
HaeIII GGCC 3 cut(s) 285, 520, 693
HapII CCGG 1 cut(s) 491
HgaI GACGC 2 cut(s) 182, 644
Hin1II CATG 4 cut(s) 256, 430, 519, 618
HincII GTYRAC 3 cut(s) 226, 348, 580
HindII GTYRAC 3 cut(s) 226, 348, 580
HindIII AAGCTT 2 cut(s) 8, 326
HinfI GANTC 2 cut(s) 432, 471
HpaII CCGG 1 cut(s) 491
HphI GGTGA 2 cut(s) 91, 142
Hpy166II GTNNAC 5 cut(s) 226, 348, 580, 598, 657
Hpy188I TCNGA 3 cut(s) 275, 531, 545
Hpy188III TCNNGA 4 cut(s) 72, 247, 475, 503
Hpy8I GTNNAC 5 cut(s) 226, 348, 580, 598, 657
Hpy99I CGWCG 1 cut(s) 138
HpyAV CCTTC 5 cut(s) 293, 461, 500, 616, 625
HpyCH4III ACNGT 2 cut(s) 40, 602
HpyCH4IV ACGT 3 cut(s) 133, 352, 576
HpyCH4V TGCA 6 cut(s) 182, 212, 365, 374, 536, 559
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 1 cut(s) 57
HpySE526I ACGT 3 cut(s) 133, 352, 576
Hsp92II CATG 4 cut(s) 256, 430, 519, 618
KpnI GGTACC 1 cut(s) 25
Kzo9I GATC 1 cut(s) 403
LmnI GCTCC 1 cut(s) 512
Lsp1109I GCAGC 2 cut(s) 349, 650
LweI GCATC 4 cut(s) 20, 157, 169, 199
MaeI CTAG 2 cut(s) 497, 593
MaeII ACGT 3 cut(s) 133, 352, 576
MaeIII GTNAC 1 cut(s) 97
MalI GATC 1 cut(s) 405
MbiI CCGCTC 1 cut(s) 104
MboI GATC 1 cut(s) 403
MboII GAAGA 5 cut(s) 131, 134, 409, 479, 518
MflI RGATCY 1 cut(s) 403
MlsI TGGCCA 3 cut(s) 285, 520, 693
MluCI AATT 3 cut(s) 186, 215, 311
MluNI TGGCCA 3 cut(s) 285, 520, 693
MlyI GAGTC 1 cut(s) 465
MmeI TCCRAC 1 cut(s) 253
MnlI CCTC 2 cut(s) 620, 680
Mox20I TGGCCA 3 cut(s) 285, 520, 693
MscI TGGCCA 3 cut(s) 285, 520, 693
MseI TTAA 2 cut(s) 189, 677
MslI CAYNNNNRTG 2 cut(s) 251, 425
Msp20I TGGCCA 3 cut(s) 285, 520, 693
MspA1I CMGCKG 1 cut(s) 455
MspI CCGG 1 cut(s) 491
MwoI GCNNNNNNNGC 1 cut(s) 371
NdeII GATC 1 cut(s) 403
NlaIII CATG 4 cut(s) 256, 430, 519, 618
NlaIV GGNNCC 1 cut(s) 23
NmuCI GTSAC 1 cut(s) 97
NspI RCATGY 1 cut(s) 256
PcsI WCGNNNNNNNCGW 1 cut(s) 142
PfeI GAWTC 1 cut(s) 432
PkrI GCNGC 2 cut(s) 364, 640
PleI GAGTC 1 cut(s) 465
PpsI GAGTC 1 cut(s) 465
PspN4I GGNNCC 1 cut(s) 23
PspPI GGNCC 2 cut(s) 275, 395
PsuI RGATCY 1 cut(s) 403
PvuII CAGCTG 1 cut(s) 455
RsaI GTAC 3 cut(s) 23, 296, 339
RsaNI GTAC 3 cut(s) 22, 295, 338
RseI CAYNNNNRTG 2 cut(s) 251, 425
SaqAI TTAA 2 cut(s) 189, 677
SatI GCNGC 2 cut(s) 363, 639
Sau3AI GATC 1 cut(s) 403
Sau96I GGNCC 2 cut(s) 275, 395
SchI GAGTC 1 cut(s) 465
SfaNI GCATC 4 cut(s) 20, 157, 169, 199
SfcI CTRYAG 1 cut(s) 399
SinI GGWCC 2 cut(s) 275, 395
SmiMI CAYNNNNRTG 2 cut(s) 251, 425
SmlI CTYRAG 1 cut(s) 473
SmoI CTYRAG 1 cut(s) 473
Sse9I AATT 3 cut(s) 186, 215, 311
SsiI CCGC 3 cut(s) 102, 510, 699
SspMI CTAG 2 cut(s) 497, 593
StyI CCWWGG 1 cut(s) 694
TaaI ACNGT 2 cut(s) 40, 602
TaiI ACGT 3 cut(s) 136, 355, 579
TaqI TCGA 2 cut(s) 331, 621
TasI AATT 3 cut(s) 186, 215, 311
TfiI GAWTC 1 cut(s) 432
Tru1I TTAA 2 cut(s) 189, 677
Tru9I TTAA 2 cut(s) 189, 677
TscAI CASTG 2 cut(s) 130, 607
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 2 cut(s) 362, 638
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 3 cut(s) 32, 304, 651
TspRI CASTG 2 cut(s) 130, 607
VpaK11BI GGWCC 2 cut(s) 275, 395
XapI RAATTY 2 cut(s) 215, 311
XceI RCATGY 1 cut(s) 256
XmiI GTMKAC 1 cut(s) 597
XspI CTAG 2 cut(s) 497, 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.