FvH4_1g04560

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013374
Physical Location & Seq
Forward (+)
2413364 .. 2415678
2315 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g04560.t1

Sequence Viewer

Length: 642 bp
ATGATGATGAAGGTTTGGAAATGGTACCAGGGCTGCCTCTCTCACCACCCATTGAAGACCCAGGTCATCAGCTCCGGCCTACTCTGGGGCGTCGGCGACATTGCTGCCCAGTACATTACTCACTCCACCACAAGAAACCGTCTTCAGCTCTCTCATGACAAAGCTGAAGATTTCAAAGTTAACTGGAAACGAGTAGCTATCACAAGTACATTTGGCTTTGCTTTTGTTGGACCCGTTGGCCATTTCTGGTATGAAAACTTGGACAAATTCATCAAACTGAAGCTTCTCCTACCAACTAACTCAGCTCGGTTTGTTGCTGCTAAAGTGGCAATGGATGGTCTTATCTTTGGTCCCCTTGATTTGTTGGTATTTTTCACCTACATGGGATTTTCTACTGGCAAGAATGCTGAACAAGTGAAGGAAGATTTGAAGAGAGATTTCATACCAGCCCTTATATTGGAGGGTGGTGTGTGGCCAATTGTTCAAGTTGCAAATTTCAGATATGTTCCTGTGAGGTATCAGCTCCTCTATGTTAATATCTTCTGCCTGTTGGACAGTGCCTTTTTGTCATGGGTTGAGCAACAAAAGGATGCCGCTTGGAAGCAGTGGTTAACATCTTTTACTTCTTTTAAAGACCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

214

Amino Acids

24.58

Weight (kDa)

9.39

Isoelectric Point (pI)

20.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 131 - 190 3.8e-19 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013374)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24570 AT3G24570
fragaria_vesca FvH4_1g04560
malus_domestica MD02G1045400.v1.1
prunus_persica Prupe.7G232500_v2.0.a1 Prupe.7G232500_v2.0.a1
pyrus_communis pycom02g03780
rosa_chinensis RchiOBHm_Chr2g0090261
rosa_laevigata RLG00000016092
rosa_multiflora Rmu_co8416553.1_g000001 Rmu_sc0004966.1_g000009
rosa_roxburghii Rroxscaffold_2G00151340
rosa_rugosa Rorug02G0006000
rosa_samantha Rh2AG051900 Rh2BG050500 Rh2CG052700 Rh2DG051800
rosa_wichuraiana Rw2G004500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 24
AccB1I GGYRCC 1 cut(s) 24
AciI CCGC 1 cut(s) 594
AcoI YGGCCR 2 cut(s) 238, 473
AcsI RAATTY 2 cut(s) 266, 493
AcuI CTGAAG 3 cut(s) 128, 186, 299
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 3 cut(s) 26, 113, 208
AfiI CCNNNNNNNGG 2 cut(s) 85, 457
AgsI TTSAA 4 cut(s) 55, 175, 430, 485
AjnI CCWGG 2 cut(s) 27, 60
AluBI AGCT 7 cut(s) 72, 148, 164, 197, 283, 305, 523
AluI AGCT 7 cut(s) 72, 148, 164, 197, 283, 305, 523
AoxI GGCC 3 cut(s) 76, 238, 473
ApeKI GCWGC 3 cut(s) 33, 104, 317
ApoI RAATTY 2 cut(s) 266, 493
Asp718I GGTACC 1 cut(s) 24
AspS9I GGNCC 2 cut(s) 230, 350
AsuHPI GGTGA 2 cut(s) 35, 367
AvaII GGWCC 2 cut(s) 230, 350
BalI TGGCCA 2 cut(s) 240, 475
BanI GGYRCC 1 cut(s) 24
BbsI GAAGAC 2 cut(s) 62, 134
BbvI GCAGC 3 cut(s) 20, 91, 304
BccI CCATC 1 cut(s) 329
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BciT130I CCWGG 2 cut(s) 29, 62
BisI GCNGC 4 cut(s) 34, 105, 318, 594
BlsI GCNGC 4 cut(s) 35, 106, 319, 595
Bme1390I CCNGG 2 cut(s) 29, 62
Bme18I GGWCC 2 cut(s) 230, 350
BmgT120I GGNCC 2 cut(s) 230, 350
BmiI GGNNCC 3 cut(s) 26, 232, 352
BmrFI CCNGG 2 cut(s) 29, 62
BmrI ACTGGG 1 cut(s) 103
BmsI GCATC 1 cut(s) 580
BmuI ACTGGG 1 cut(s) 103
BoxI GACNNNNGTC 1 cut(s) 62
BpiI GAAGAC 2 cut(s) 62, 134
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 28, 60
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 457
Bse1I ACTGG 3 cut(s) 109, 188, 400
Bse3DI GCAATG 2 cut(s) 99, 336
BseBI CCWGG 2 cut(s) 29, 62
BseDI CCNNGG 2 cut(s) 28, 60
BseGI GGATG 2 cut(s) 340, 595
BseLI CCNNNNNNNGG 2 cut(s) 85, 457
BseMI GCAATG 2 cut(s) 99, 336
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 3 cut(s) 109, 188, 400
BseRI GAGGAG 1 cut(s) 515
BseXI GCAGC 3 cut(s) 20, 91, 304
BshFI GGCC 3 cut(s) 78, 240, 475
BshNI GGYRCC 1 cut(s) 24
BsiSI CCGG 1 cut(s) 75
BslFI GGGAC 1 cut(s) 336
BslI CCNNNNNNNGG 2 cut(s) 85, 457
BsmFI GGGAC 1 cut(s) 336
BsmI GAATGC 1 cut(s) 409
BsnI GGCC 3 cut(s) 78, 240, 475
BspACI CCGC 1 cut(s) 594
BspANI GGCC 3 cut(s) 78, 240, 475
BspCNI CTCAG 1 cut(s) 314
BspHI TCATGA 1 cut(s) 154
BspLI GGNNCC 3 cut(s) 26, 232, 352
BspT107I GGYRCC 1 cut(s) 24
BsrDI GCAATG 2 cut(s) 99, 336
BsrI ACTGG 3 cut(s) 109, 188, 400
BssECI CCNNGG 2 cut(s) 28, 60
BssNI GRCGYC 1 cut(s) 90
Bst2UI CCWGG 2 cut(s) 29, 62
Bst4CI ACNGT 2 cut(s) 140, 557
Bst6I CTCTTC 1 cut(s) 425
BstACI GRCGYC 1 cut(s) 90
BstDEI CTNAG 1 cut(s) 301
BstF5I GGATG 2 cut(s) 340, 595
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstNI CCWGG 2 cut(s) 29, 62
BstPAI GACNNNNGTC 1 cut(s) 62
BstSCI CCNGG 2 cut(s) 27, 60
BstV1I GCAGC 3 cut(s) 20, 91, 304
BstV2I GAAGAC 2 cut(s) 62, 134
BsuRI GGCC 3 cut(s) 78, 240, 475
BtsCI GGATG 2 cut(s) 340, 595
BtsI GCAGTG 1 cut(s) 611
BtsIMutI CAGTG 2 cut(s) 562, 611
CciI TCATGA 1 cut(s) 154
Cfr13I GGNCC 2 cut(s) 230, 350
CseI GACGC 1 cut(s) 79
Csp6I GTAC 3 cut(s) 25, 112, 207
CviAII CATG 3 cut(s) 155, 382, 570
CviQI GTAC 3 cut(s) 25, 112, 207
DdeI CTNAG 1 cut(s) 301
DraI TTTAAA 1 cut(s) 631
EaeI YGGCCR 2 cut(s) 238, 473
Eam1104I CTCTTC 1 cut(s) 425
EarI CTCTTC 1 cut(s) 425
Eco47I GGWCC 2 cut(s) 230, 350
Eco57I CTGAAG 3 cut(s) 128, 186, 299
EcoRII CCWGG 2 cut(s) 27, 60
FaeI CATG 3 cut(s) 158, 385, 573
FaiI YATR 8 cut(s) 156, 252, 383, 443, 455, 504, 531, 571
FaqI GGGAC 1 cut(s) 336
FatI CATG 3 cut(s) 154, 381, 569
Fnu4HI GCNGC 4 cut(s) 34, 105, 318, 594
FokI GGATG 2 cut(s) 347, 602
Fsp4HI GCNGC 4 cut(s) 34, 105, 318, 594
GluI GCNGC 4 cut(s) 34, 105, 318, 594
HaeIII GGCC 3 cut(s) 78, 240, 475
HapII CCGG 1 cut(s) 75
HgaI GACGC 1 cut(s) 79
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 3 cut(s) 158, 385, 573
HincII GTYRAC 2 cut(s) 181, 612
HindII GTYRAC 2 cut(s) 181, 612
HindIII AAGCTT 1 cut(s) 281
HpaI GTTAAC 2 cut(s) 181, 612
HpaII CCGG 1 cut(s) 75
HphI GGTGA 2 cut(s) 35, 367
Hpy166II GTNNAC 2 cut(s) 181, 612
Hpy188I TCNGA 1 cut(s) 500
Hpy188III TCNNGA 1 cut(s) 155
Hpy8I GTNNAC 2 cut(s) 181, 612
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 2 cut(s) 4, 412
HpyCH4III ACNGT 2 cut(s) 140, 557
HpyCH4V TGCA 1 cut(s) 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
HpyF3I CTNAG 1 cut(s) 301
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 3 cut(s) 158, 385, 573
KpnI GGTACC 1 cut(s) 28
KspAI GTTAAC 2 cut(s) 181, 612
LmnI GCTCC 2 cut(s) 77, 528
Lsp1109I GCAGC 3 cut(s) 20, 91, 304
LweI GCATC 1 cut(s) 580
MboII GAAGA 6 cut(s) 67, 134, 179, 434, 442, 532
MfeI CAATTG 1 cut(s) 477
MlsI TGGCCA 2 cut(s) 240, 475
MluCI AATT 3 cut(s) 266, 477, 493
MluNI TGGCCA 2 cut(s) 240, 475
MmeI TCCRAC 2 cut(s) 208, 531
MnlI CCTC 4 cut(s) 47, 454, 507, 536
Mox20I TGGCCA 2 cut(s) 240, 475
MscI TGGCCA 2 cut(s) 240, 475
MseI TTAA 4 cut(s) 180, 534, 611, 630
MslI CAYNNNNRTG 1 cut(s) 380
Msp20I TGGCCA 2 cut(s) 240, 475
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 2 cut(s) 29, 62
MunI CAATTG 1 cut(s) 477
Mva1269I GAATGC 1 cut(s) 409
MvaI CCWGG 2 cut(s) 29, 62
MwoI GCNNNNNNNGC 1 cut(s) 326
NlaIII CATG 3 cut(s) 158, 385, 573
NlaIV GGNNCC 3 cut(s) 26, 232, 352
PagI TCATGA 1 cut(s) 154
PctI GAATGC 1 cut(s) 409
PkrI GCNGC 4 cut(s) 35, 106, 319, 595
PshAI GACNNNNGTC 1 cut(s) 62
Psp6I CCWGG 2 cut(s) 27, 60
PspGI CCWGG 2 cut(s) 27, 60
PspN4I GGNNCC 3 cut(s) 26, 232, 352
PspPI GGNCC 2 cut(s) 230, 350
RsaI GTAC 3 cut(s) 26, 113, 208
RsaNI GTAC 3 cut(s) 25, 112, 207
RseI CAYNNNNRTG 1 cut(s) 380
SaqAI TTAA 4 cut(s) 180, 534, 611, 630
SatI GCNGC 4 cut(s) 34, 105, 318, 594
Sau96I GGNCC 2 cut(s) 230, 350
ScrFI CCNGG 2 cut(s) 29, 62
SfaNI GCATC 1 cut(s) 580
SinI GGWCC 2 cut(s) 230, 350
SmiMI CAYNNNNRTG 1 cut(s) 380
Sse9I AATT 3 cut(s) 266, 477, 493
SsiI CCGC 1 cut(s) 594
StyD4I CCNGG 2 cut(s) 27, 60
TaaI ACNGT 2 cut(s) 140, 557
TasI AATT 3 cut(s) 266, 477, 493
TatI WGTACW 2 cut(s) 111, 206
TauI GCSGC 1 cut(s) 596
Tru1I TTAA 4 cut(s) 180, 534, 611, 630
Tru9I TTAA 4 cut(s) 180, 534, 611, 630
TscAI CASTG 2 cut(s) 562, 611
TseI GCWGC 3 cut(s) 33, 104, 317
TspDTI ATGAA 4 cut(s) 23, 259, 267, 430
TspRI CASTG 2 cut(s) 562, 611
VpaK11BI GGWCC 2 cut(s) 230, 350
XapI RAATTY 2 cut(s) 266, 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.