MD02G1045400.v1.1

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0013374
Physical Location & Seq
Forward (+)
3644367 .. 3648040
3674 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1045400.v1.1.491

Sequence Viewer

Length: 657 bp
ATGATGATGAAGCTCTGGAAATGGTACCAGAACTGCCTCTCTTTCCACCCACTCAAAACCCAGGTCATCAGCTCCGGCGTCCTCTGGGGCGTCGGCGACATTGCCGCCCAGTACGTTACTCACTCCAACGCAAGAAGGCGCCTTCATCTTTCTGATACAGACGCAAACTTCAAGGTTAACTGGAAACGCGTAGCTATCACAAGCACATTTGGGTTTGCCTTTGTTGGACCAGTTGGCCATTTCTGGTACGAAGGCTTGGACAAGTTTATAAAGCTGAAGCTTCACCTACAACCCAAGTCAGCGCAGTTTGTTGCTGCTAAAGTGGCAATGGATGGCCTTATCTTTGGCCCCTTGGATTTGTTGGTGTTTTTCACTTACATGGGATTTTCCACGGGCAAGAATTCTGTTCAGGTGAAGGAGGATTTGAAGAGAGATTTCCTACCAGCCCTTGCGTTGGAGGGTGGTGTGTGGCCAATTGTTCAGACTGCGAATTTCCGATATGTTCCTGTGAGGTACCAACTCCTCTATGTAAACATCTTTTGCCTGTTGGACAGTGCCTTTTTGTCATGGGTCGAGCAGCAAAAGGATGCTGCTTGGAAGCAGTGGTTCACATCTTTTACTTCAGTTAAGGAACGAGGAGGTCAGGGCAGATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

219

Amino Acids

24.99

Weight (kDa)

9.67

Isoelectric Point (pI)

24.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 130 - 189 1.5e-17 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013374)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24570 AT3G24570
fragaria_vesca FvH4_1g04560
malus_domestica MD02G1045400.v1.1
prunus_persica Prupe.7G232500_v2.0.a1 Prupe.7G232500_v2.0.a1
pyrus_communis pycom02g03780
rosa_chinensis RchiOBHm_Chr2g0090261
rosa_laevigata RLG00000016092
rosa_multiflora Rmu_co8416553.1_g000001 Rmu_sc0004966.1_g000009
rosa_roxburghii Rroxscaffold_2G00151340
rosa_rugosa Rorug02G0006000
rosa_samantha Rh2AG051900 Rh2BG050500 Rh2CG052700 Rh2DG051800
rosa_wichuraiana Rw2G004500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 269
Acc65I GGTACC 2 cut(s) 24, 513
AccB1I GGYRCC 3 cut(s) 24, 138, 513
AccII CGCG 1 cut(s) 189
AciI CCGC 1 cut(s) 105
AcoI YGGCCR 2 cut(s) 235, 470
AcsI RAATTY 2 cut(s) 400, 490
AcuI CTGAAG 2 cut(s) 296, 606
AcyI GRCGYC 3 cut(s) 78, 90, 139
AfaI GTAC 4 cut(s) 26, 113, 248, 515
AfiI CCNNNNNNNGG 1 cut(s) 454
AflIII ACRYGT 1 cut(s) 187
AgsI TTSAA 2 cut(s) 172, 427
AjnI CCWGG 1 cut(s) 60
AluBI AGCT 5 cut(s) 13, 72, 194, 274, 280
AluI AGCT 5 cut(s) 13, 72, 194, 274, 280
AoxI GGCC 4 cut(s) 235, 334, 346, 470
ApeKI GCWGC 3 cut(s) 314, 577, 590
ApoI RAATTY 2 cut(s) 400, 490
ArsI GACNNNNNNTTYG 2 cut(s) 48, 80
Asp718I GGTACC 2 cut(s) 24, 513
AspLEI GCGC 2 cut(s) 141, 304
AspS9I GGNCC 2 cut(s) 227, 347
AsuHPI GGTGA 2 cut(s) 275, 424
AvaII GGWCC 1 cut(s) 227
BalI TGGCCA 2 cut(s) 237, 472
BanI GGYRCC 3 cut(s) 24, 138, 513
BbvI GCAGC 3 cut(s) 301, 577, 589
BccI CCATC 1 cut(s) 326
BciT130I CCWGG 1 cut(s) 62
BfoI RGCGCY 1 cut(s) 142
BisI GCNGC 4 cut(s) 105, 315, 578, 591
BlsI GCNGC 4 cut(s) 106, 316, 579, 592
Bme1390I CCNGG 1 cut(s) 62
Bme18I GGWCC 1 cut(s) 227
BmgT120I GGNCC 2 cut(s) 227, 347
BmiI GGNNCC 4 cut(s) 26, 140, 349, 515
BmrFI CCNGG 1 cut(s) 62
BmrI ACTGGG 1 cut(s) 103
BmsI GCATC 1 cut(s) 577
BmuI ACTGGG 1 cut(s) 103
BsaHI GRCGYC 3 cut(s) 78, 90, 139
BsaJI CCNNGG 3 cut(s) 60, 351, 390
Bsc4I CCNNNNNNNGG 1 cut(s) 454
Bse1I ACTGG 3 cut(s) 109, 185, 230
Bse3DI GCAATG 2 cut(s) 99, 333
BseBI CCWGG 1 cut(s) 62
BseDI CCNNGG 3 cut(s) 60, 351, 390
BseGI GGATG 2 cut(s) 337, 592
BseLI CCNNNNNNNGG 1 cut(s) 454
BseMI GCAATG 2 cut(s) 99, 333
BseNI ACTGG 3 cut(s) 109, 185, 230
BseRI GAGGAG 2 cut(s) 512, 651
BseXI GCAGC 3 cut(s) 301, 577, 589
Bsh1236I CGCG 1 cut(s) 189
BshFI GGCC 4 cut(s) 237, 336, 348, 472
BshNI GGYRCC 3 cut(s) 24, 138, 513
BsiSI CCGG 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 454
BsnI GGCC 4 cut(s) 237, 336, 348, 472
BspACI CCGC 1 cut(s) 105
BspANI GGCC 4 cut(s) 237, 336, 348, 472
BspFNI CGCG 1 cut(s) 189
BspLI GGNNCC 4 cut(s) 26, 140, 349, 515
BspT107I GGYRCC 3 cut(s) 24, 138, 513
BsrDI GCAATG 2 cut(s) 99, 333
BsrI ACTGG 3 cut(s) 109, 185, 230
BssECI CCNNGG 3 cut(s) 60, 351, 390
BssNI GRCGYC 3 cut(s) 78, 90, 139
BssT1I CCWWGG 1 cut(s) 351
Bst2UI CCWGG 1 cut(s) 62
Bst4CI ACNGT 1 cut(s) 554
Bst6I CTCTTC 1 cut(s) 422
BstACI GRCGYC 3 cut(s) 78, 90, 139
BstDSI CCRYGG 1 cut(s) 390
BstF5I GGATG 2 cut(s) 337, 592
BstFNI CGCG 1 cut(s) 189
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 2 cut(s) 141, 304
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNI CCWGG 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 60
BstUI CGCG 1 cut(s) 189
BstV1I GCAGC 3 cut(s) 301, 577, 589
BsuRI GGCC 4 cut(s) 237, 336, 348, 472
BtgI CCRYGG 1 cut(s) 390
BtsCI GGATG 2 cut(s) 337, 592
BtsI GCAGTG 1 cut(s) 608
BtsIMutI CAGTG 2 cut(s) 559, 608
CfoI GCGC 2 cut(s) 141, 304
Cfr13I GGNCC 2 cut(s) 227, 347
CseI GACGC 3 cut(s) 67, 79, 170
Csp6I GTAC 4 cut(s) 25, 112, 247, 514
CviAII CATG 2 cut(s) 379, 567
CviQI GTAC 4 cut(s) 25, 112, 247, 514
DinI GGCGCC 1 cut(s) 140
EaeI YGGCCR 2 cut(s) 235, 470
Eam1104I CTCTTC 1 cut(s) 422
EarI CTCTTC 1 cut(s) 422
Eco130I CCWWGG 1 cut(s) 351
Eco47I GGWCC 1 cut(s) 227
Eco57I CTGAAG 2 cut(s) 296, 606
EcoRI GAATTC 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 60
EcoT14I CCWWGG 1 cut(s) 351
EgeI GGCGCC 1 cut(s) 140
EheI GGCGCC 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 2 cut(s) 382, 570
FaiI YATR 6 cut(s) 269, 380, 501, 528, 568, 655
FatI CATG 2 cut(s) 378, 566
Fnu4HI GCNGC 4 cut(s) 105, 315, 578, 591
FokI GGATG 2 cut(s) 344, 599
Fsp4HI GCNGC 4 cut(s) 105, 315, 578, 591
GlaI GCGC 2 cut(s) 140, 303
GluI GCNGC 4 cut(s) 105, 315, 578, 591
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 4 cut(s) 237, 336, 348, 472
HapII CCGG 1 cut(s) 75
HgaI GACGC 3 cut(s) 67, 79, 170
HhaI GCGC 2 cut(s) 141, 304
Hin1I GRCGYC 3 cut(s) 78, 90, 139
Hin1II CATG 2 cut(s) 382, 570
Hin6I GCGC 2 cut(s) 139, 302
HinP1I GCGC 2 cut(s) 139, 302
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HindIII AAGCTT 1 cut(s) 278
HpaI GTTAAC 1 cut(s) 178
HpaII CCGG 1 cut(s) 75
HphI GGTGA 2 cut(s) 275, 424
Hpy166II GTNNAC 3 cut(s) 178, 532, 609
Hpy188I TCNGA 3 cut(s) 154, 483, 497
Hpy188III TCNNGA 1 cut(s) 16
Hpy8I GTNNAC 3 cut(s) 178, 532, 609
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 4 cut(s) 129, 152, 245, 409
HpyCH4III ACNGT 1 cut(s) 554
HpyCH4IV ACGT 1 cut(s) 114
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpySE526I ACGT 1 cut(s) 114
Hsp92I GRCGYC 3 cut(s) 78, 90, 139
Hsp92II CATG 2 cut(s) 382, 570
HspAI GCGC 2 cut(s) 139, 302
KasI GGCGCC 1 cut(s) 138
KpnI GGTACC 2 cut(s) 28, 517
KspAI GTTAAC 1 cut(s) 178
LmnI GCTCC 1 cut(s) 77
Lsp1109I GCAGC 3 cut(s) 301, 577, 589
LweI GCATC 1 cut(s) 577
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 115
MboII GAAGA 1 cut(s) 439
MfeI CAATTG 1 cut(s) 474
MlsI TGGCCA 2 cut(s) 237, 472
MluCI AATT 3 cut(s) 400, 474, 490
MluI ACGCGT 1 cut(s) 187
MluNI TGGCCA 2 cut(s) 237, 472
Mly113I GGCGCC 1 cut(s) 139
MmeI TCCRAC 4 cut(s) 150, 205, 435, 528
MnlI CCTC 8 cut(s) 47, 92, 412, 451, 504, 533, 629, 632
Mox20I TGGCCA 2 cut(s) 237, 472
MscI TGGCCA 2 cut(s) 237, 472
MseI TTAA 2 cut(s) 177, 627
MslI CAYNNNNRTG 1 cut(s) 377
Msp20I TGGCCA 2 cut(s) 237, 472
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 1 cut(s) 62
MunI CAATTG 1 cut(s) 474
MvaI CCWGG 1 cut(s) 62
MvnI CGCG 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 323
NarI GGCGCC 1 cut(s) 139
NlaIII CATG 2 cut(s) 382, 570
NlaIV GGNNCC 4 cut(s) 26, 140, 349, 515
PkrI GCNGC 4 cut(s) 106, 316, 579, 592
PluTI GGCGCC 1 cut(s) 142
PsiI TTATAA 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 60
PspGI CCWGG 1 cut(s) 60
PspN4I GGNNCC 4 cut(s) 26, 140, 349, 515
PspPI GGNCC 2 cut(s) 227, 347
RsaI GTAC 4 cut(s) 26, 113, 248, 515
RsaNI GTAC 4 cut(s) 25, 112, 247, 514
RseI CAYNNNNRTG 1 cut(s) 377
SaqAI TTAA 2 cut(s) 177, 627
SatI GCNGC 4 cut(s) 105, 315, 578, 591
Sau96I GGNCC 2 cut(s) 227, 347
ScrFI CCNGG 1 cut(s) 62
SfaNI GCATC 1 cut(s) 577
SfoI GGCGCC 1 cut(s) 140
SinI GGWCC 1 cut(s) 227
SmiMI CAYNNNNRTG 1 cut(s) 377
Sse9I AATT 3 cut(s) 400, 474, 490
SsiI CCGC 1 cut(s) 105
SspDI GGCGCC 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 60
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 1 cut(s) 554
TaiI ACGT 1 cut(s) 117
TaqI TCGA 1 cut(s) 573
TasI AATT 3 cut(s) 400, 474, 490
TauI GCSGC 1 cut(s) 107
Tru1I TTAA 2 cut(s) 177, 627
Tru9I TTAA 2 cut(s) 177, 627
TscAI CASTG 2 cut(s) 559, 608
TseI GCWGC 3 cut(s) 314, 577, 590
TspDTI ATGAA 2 cut(s) 23, 134
TspRI CASTG 2 cut(s) 559, 608
VpaK11BI GGWCC 1 cut(s) 227
XapI RAATTY 2 cut(s) 400, 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.