Rh2CG052700

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0013374
Physical Location & Seq
Forward (+)
4167837 .. 4170348
2512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG052700.1

Sequence Viewer

Length: 513 bp
ATGATGATCCTATATCTTATGCAGCACGACAAAGCTGAAGATTTCAAGGTTAACTGGAAACGAGTAGCTATCACAAGTACATTTGGCTTTGCTTTTGTTGGACCCGTTGGCCATTTCTGGTACGAAAACTTGGACAAGTTCATAAAGTTGAAGCTTCACCTAAAACCTAACTCAGCCCAGTTTGTTGCTGCTAAAGTGGCAATGGATGGTCTTATCTTTGGCCCCCTTGATTTGTTGGTGTTCTTCACCTACATGGGATTTTCCACTGGCAAGAATGCTGATCAAGTGAAGGAAGATTTGAAGAGAGATTTCATACCAGCCCTCATGTTGGAGGGTGGCGTGTGGCCAATTGTTCAAGTTGCAAATTTCAGATATGTTCCTGTGAGGTATCAGCTCCTCTATGTTAATATCTTCTGCCTGTTGGACAGTGCCTTTTTGTCATGGGTCGAGCAACAAAAGGATGCTGCTTGGAAGCAATGGTTAACATCTTTTGCATCTTTTAAAGACCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

170

Amino Acids

19.75

Weight (kDa)

8.93

Isoelectric Point (pI)

17.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 88 - 147 4.2e-19 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013374)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24570 AT3G24570
fragaria_vesca FvH4_1g04560
malus_domestica MD02G1045400.v1.1
prunus_persica Prupe.7G232500_v2.0.a1 Prupe.7G232500_v2.0.a1
pyrus_communis pycom02g03780
rosa_chinensis RchiOBHm_Chr2g0090261
rosa_laevigata RLG00000016092
rosa_multiflora Rmu_co8416553.1_g000001 Rmu_sc0004966.1_g000009
rosa_roxburghii Rroxscaffold_2G00151340
rosa_rugosa Rorug02G0006000
rosa_samantha Rh2AG051900 Rh2BG050500 Rh2CG052700 Rh2DG051800
rosa_wichuraiana Rw2G004500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 109, 344
AcsI RAATTY 1 cut(s) 364
AcuI CTGAAG 1 cut(s) 57
AfaI GTAC 2 cut(s) 79, 122
AfiI CCNNNNNNNGG 1 cut(s) 328
AgsI TTSAA 4 cut(s) 46, 151, 301, 356
AluBI AGCT 4 cut(s) 35, 68, 154, 394
AluI AGCT 4 cut(s) 35, 68, 154, 394
AoxI GGCC 3 cut(s) 109, 220, 344
ApeKI GCWGC 3 cut(s) 22, 188, 464
ApoI RAATTY 1 cut(s) 364
AspS9I GGNCC 2 cut(s) 101, 221
AsuHPI GGTGA 2 cut(s) 149, 238
AvaII GGWCC 1 cut(s) 101
BalI TGGCCA 2 cut(s) 111, 346
BbvI GCAGC 3 cut(s) 34, 175, 451
BccI CCATC 1 cut(s) 200
BclI TGATCA 1 cut(s) 280
BisI GCNGC 3 cut(s) 23, 189, 465
BlsI GCNGC 3 cut(s) 24, 190, 466
Bme18I GGWCC 1 cut(s) 101
BmgT120I GGNCC 2 cut(s) 101, 221
BmiI GGNNCC 2 cut(s) 103, 223
BmrI ACTGGG 1 cut(s) 172
BmsI GCATC 2 cut(s) 451, 503
BmuI ACTGGG 1 cut(s) 172
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse1I ACTGG 3 cut(s) 59, 178, 271
Bse3DI GCAATG 2 cut(s) 207, 482
BseGI GGATG 2 cut(s) 211, 466
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMI GCAATG 2 cut(s) 207, 482
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 3 cut(s) 59, 178, 271
BseRI GAGGAG 1 cut(s) 386
BseXI GCAGC 3 cut(s) 34, 175, 451
BshFI GGCC 3 cut(s) 111, 222, 346
BslI CCNNNNNNNGG 1 cut(s) 328
BsmI GAATGC 1 cut(s) 280
BsnI GGCC 3 cut(s) 111, 222, 346
Bsp143I GATC 2 cut(s) 6, 280
BspANI GGCC 3 cut(s) 111, 222, 346
BspCNI CTCAG 1 cut(s) 185
BspLI GGNNCC 2 cut(s) 103, 223
BsrDI GCAATG 2 cut(s) 207, 482
BsrI ACTGG 3 cut(s) 59, 178, 271
BssMI GATC 2 cut(s) 6, 280
Bst4CI ACNGT 1 cut(s) 428
Bst6I CTCTTC 1 cut(s) 296
BstDEI CTNAG 1 cut(s) 172
BstF5I GGATG 2 cut(s) 211, 466
BstKTI GATC 2 cut(s) 9, 283
BstMBI GATC 2 cut(s) 6, 280
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstV1I GCAGC 3 cut(s) 34, 175, 451
BsuRI GGCC 3 cut(s) 111, 222, 346
BtsCI GGATG 2 cut(s) 211, 466
BtsIMutI CAGTG 2 cut(s) 264, 433
Cfr13I GGNCC 2 cut(s) 101, 221
Csp6I GTAC 2 cut(s) 78, 121
CviAII CATG 3 cut(s) 253, 325, 441
CviQI GTAC 2 cut(s) 78, 121
DdeI CTNAG 1 cut(s) 172
DpnI GATC 2 cut(s) 8, 282
DpnII GATC 2 cut(s) 6, 280
DraI TTTAAA 1 cut(s) 502
EaeI YGGCCR 2 cut(s) 109, 344
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
Eco47I GGWCC 1 cut(s) 101
Eco57I CTGAAG 1 cut(s) 57
FaeI CATG 3 cut(s) 256, 328, 444
FaiI YATR 9 cut(s) 13, 20, 143, 254, 314, 326, 375, 402, 442
FatI CATG 3 cut(s) 252, 324, 440
FbaI TGATCA 1 cut(s) 280
Fnu4HI GCNGC 3 cut(s) 23, 189, 465
FokI GGATG 2 cut(s) 218, 473
Fsp4HI GCNGC 3 cut(s) 23, 189, 465
GluI GCNGC 3 cut(s) 23, 189, 465
HaeIII GGCC 3 cut(s) 111, 222, 346
Hin1II CATG 3 cut(s) 256, 328, 444
HincII GTYRAC 2 cut(s) 52, 483
HindII GTYRAC 2 cut(s) 52, 483
HindIII AAGCTT 1 cut(s) 152
HpaI GTTAAC 2 cut(s) 52, 483
HphI GGTGA 2 cut(s) 149, 238
Hpy166II GTNNAC 2 cut(s) 52, 483
Hpy188I TCNGA 1 cut(s) 371
Hpy8I GTNNAC 2 cut(s) 52, 483
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 1 cut(s) 428
HpyCH4V TGCA 3 cut(s) 22, 362, 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 1 cut(s) 172
Hsp92II CATG 3 cut(s) 256, 328, 444
Ksp22I TGATCA 1 cut(s) 280
KspAI GTTAAC 2 cut(s) 52, 483
Kzo9I GATC 2 cut(s) 6, 280
LmnI GCTCC 1 cut(s) 399
LpnPI CCDG 7 cut(s) 40, 103, 191, 252, 330, 393, 431
Lsp1109I GCAGC 3 cut(s) 34, 175, 451
LweI GCATC 2 cut(s) 451, 503
MalI GATC 2 cut(s) 8, 282
MboI GATC 2 cut(s) 6, 280
MboII GAAGA 5 cut(s) 50, 235, 305, 313, 403
MfeI CAATTG 1 cut(s) 348
MlsI TGGCCA 2 cut(s) 111, 346
MluCI AATT 2 cut(s) 348, 364
MluNI TGGCCA 2 cut(s) 111, 346
MmeI TCCRAC 3 cut(s) 79, 309, 402
MnlI CCTC 4 cut(s) 325, 332, 378, 407
Mox20I TGGCCA 2 cut(s) 111, 346
MscI TGGCCA 2 cut(s) 111, 346
MseI TTAA 4 cut(s) 51, 405, 482, 501
MslI CAYNNNNRTG 1 cut(s) 251
Msp20I TGGCCA 2 cut(s) 111, 346
MunI CAATTG 1 cut(s) 348
Mva1269I GAATGC 1 cut(s) 280
MwoI GCNNNNNNNGC 1 cut(s) 197
NdeII GATC 2 cut(s) 6, 280
NlaIII CATG 3 cut(s) 256, 328, 444
NlaIV GGNNCC 2 cut(s) 103, 223
PctI GAATGC 1 cut(s) 280
PkrI GCNGC 3 cut(s) 24, 190, 466
PspN4I GGNNCC 2 cut(s) 103, 223
PspPI GGNCC 2 cut(s) 101, 221
RsaI GTAC 2 cut(s) 79, 122
RsaNI GTAC 2 cut(s) 78, 121
RseI CAYNNNNRTG 1 cut(s) 251
SaqAI TTAA 4 cut(s) 51, 405, 482, 501
SatI GCNGC 3 cut(s) 23, 189, 465
Sau3AI GATC 2 cut(s) 6, 280
Sau96I GGNCC 2 cut(s) 101, 221
SetI ASST 9 cut(s) 37, 51, 70, 156, 162, 169, 251, 389, 396
SfaNI GCATC 2 cut(s) 451, 503
SinI GGWCC 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 251
Sse9I AATT 2 cut(s) 348, 364
TaaI ACNGT 1 cut(s) 428
TaqI TCGA 1 cut(s) 447
TasI AATT 2 cut(s) 348, 364
TatI WGTACW 1 cut(s) 77
Tru1I TTAA 4 cut(s) 51, 405, 482, 501
Tru9I TTAA 4 cut(s) 51, 405, 482, 501
TscAI CASTG 2 cut(s) 271, 433
TseI GCWGC 3 cut(s) 22, 188, 464
TspDTI ATGAA 2 cut(s) 130, 301
TspRI CASTG 2 cut(s) 271, 433
VpaK11BI GGWCC 1 cut(s) 101
XapI RAATTY 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.