RLG00000016092

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0013374
Physical Location & Seq
Forward (+)
3811969 .. 3813868
1900 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016092

Sequence Viewer

Length: 639 bp
ATGCTCAGGGTCTGGAAATGGTACCAGAGCTGCCTCTCTCAGCATCCATTGAAGACCCAGGTCATCAGCTCCGGCGTCCTCTGGGGCGTCGGCGACATTGCTGCCCAGTACATTACTCACTCCACCGCAAGAAAGCGTCTTCAACTCTCTCACGACAAAGCTGAAGATTTCAAAGTTAACTGGAAACGAGTAGCTATCACAAGTACATTTGGCTTTGCTTTTGTTGGACCCGTTGGCCATTTCTGGTACGAAAACTTGGACAAGTTCATAAAGTTGAAGCTTCACCTAAAACCTAATTCAGCCCGGTTTGTTGCTGCTAAAGTGGCAATGGATGGTCTTATCTTTGGCCCTCTTGATTTGTTGGTGTTCTTCACCTACATGGGATTTTCCACTGGCAAGAATGCTGATCAAGTGAAGGAAGATTTGAAGAGAGATTTCATACCAGCCCTTATATTGGAGGGTGGCGTGTGGCCAATTGTTCAAGTTGCAAATTTCAGATATGTTCCTGTGAGGTATCAGCTCCTCTATGTTAATATCTTCTGCCTGTTGGACAGTGCCTTTTTGTCATGGGTCGAGCAACAAAAGGATGCTGCTTGGAAGCAATGGTTAACATCTTTTACATCTTTTAAAGACCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

213

Amino Acids

24.49

Weight (kDa)

9.56

Isoelectric Point (pI)

25.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 130 - 189 6.8e-19 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013374)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24570 AT3G24570
fragaria_vesca FvH4_1g04560
malus_domestica MD02G1045400.v1.1
prunus_persica Prupe.7G232500_v2.0.a1 Prupe.7G232500_v2.0.a1
pyrus_communis pycom02g03780
rosa_chinensis RchiOBHm_Chr2g0090261
rosa_laevigata RLG00000016092
rosa_multiflora Rmu_co8416553.1_g000001 Rmu_sc0004966.1_g000009
rosa_roxburghii Rroxscaffold_2G00151340
rosa_rugosa Rorug02G0006000
rosa_samantha Rh2AG051900 Rh2BG050500 Rh2CG052700 Rh2DG051800
rosa_wichuraiana Rw2G004500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 21
AccB1I GGYRCC 1 cut(s) 21
AciI CCGC 1 cut(s) 126
AcoI YGGCCR 2 cut(s) 235, 470
AcsI RAATTY 1 cut(s) 490
AcuI CTGAAG 1 cut(s) 183
AcyI GRCGYC 2 cut(s) 75, 87
AfaI GTAC 4 cut(s) 23, 110, 205, 248
AfiI CCNNNNNNNGG 1 cut(s) 454
AgsI TTSAA 6 cut(s) 52, 143, 172, 277, 427, 482
AjnI CCWGG 1 cut(s) 57
AluBI AGCT 6 cut(s) 30, 69, 161, 194, 280, 520
AluI AGCT 6 cut(s) 30, 69, 161, 194, 280, 520
AlwNI CAGNNNCTG 1 cut(s) 12
AoxI GGCC 3 cut(s) 235, 346, 470
ApeKI GCWGC 4 cut(s) 30, 101, 314, 590
ApoI RAATTY 1 cut(s) 490
Asp718I GGTACC 1 cut(s) 21
AspS9I GGNCC 2 cut(s) 227, 347
AsuC2I CCSGG 1 cut(s) 304
AsuHPI GGTGA 2 cut(s) 275, 364
AvaII GGWCC 1 cut(s) 227
BalI TGGCCA 2 cut(s) 237, 472
BanI GGYRCC 1 cut(s) 21
BbsI GAAGAC 2 cut(s) 59, 131
BbvI GCAGC 4 cut(s) 17, 88, 301, 577
BccI CCATC 1 cut(s) 326
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciT130I CCWGG 1 cut(s) 59
BclI TGATCA 1 cut(s) 406
BcnI CCSGG 1 cut(s) 304
BisI GCNGC 4 cut(s) 31, 102, 315, 591
BlsI GCNGC 4 cut(s) 32, 103, 316, 592
Bme1390I CCNGG 2 cut(s) 59, 304
Bme18I GGWCC 1 cut(s) 227
BmgT120I GGNCC 2 cut(s) 227, 347
BmiI GGNNCC 2 cut(s) 23, 229
BmrFI CCNGG 2 cut(s) 59, 304
BmrI ACTGGG 1 cut(s) 100
BmsI GCATC 2 cut(s) 52, 577
BmuI ACTGGG 1 cut(s) 100
BoxI GACNNNNGTC 1 cut(s) 59
BpiI GAAGAC 2 cut(s) 59, 131
Bpu10I CCTNAGC 1 cut(s) 5
BpuMI CCSGG 1 cut(s) 304
BsaHI GRCGYC 2 cut(s) 75, 87
BsaJI CCNNGG 1 cut(s) 57
Bsc4I CCNNNNNNNGG 1 cut(s) 454
Bse1I ACTGG 3 cut(s) 106, 185, 397
Bse3DI GCAATG 3 cut(s) 96, 333, 608
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 3 cut(s) 43, 337, 592
BseLI CCNNNNNNNGG 1 cut(s) 454
BseMI GCAATG 3 cut(s) 96, 333, 608
BseMII CTCAG 2 cut(s) 19, 53
BseNI ACTGG 3 cut(s) 106, 185, 397
BseRI GAGGAG 1 cut(s) 512
BseXI GCAGC 4 cut(s) 17, 88, 301, 577
BshFI GGCC 3 cut(s) 237, 348, 472
BshNI GGYRCC 1 cut(s) 21
BsiSI CCGG 2 cut(s) 72, 304
BslI CCNNNNNNNGG 1 cut(s) 454
BsmI GAATGC 1 cut(s) 406
BsnI GGCC 3 cut(s) 237, 348, 472
Bsp143I GATC 1 cut(s) 406
BspACI CCGC 1 cut(s) 126
BspANI GGCC 3 cut(s) 237, 348, 472
BspCNI CTCAG 2 cut(s) 18, 52
BspLI GGNNCC 2 cut(s) 23, 229
BspT107I GGYRCC 1 cut(s) 21
BsrDI GCAATG 3 cut(s) 96, 333, 608
BsrI ACTGG 3 cut(s) 106, 185, 397
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 1 cut(s) 406
BssNI GRCGYC 2 cut(s) 75, 87
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 1 cut(s) 554
Bst6I CTCTTC 1 cut(s) 422
BstACI GRCGYC 2 cut(s) 75, 87
BstDEI CTNAG 2 cut(s) 5, 39
BstF5I GGATG 3 cut(s) 43, 337, 592
BstKTI GATC 1 cut(s) 409
BstMBI GATC 1 cut(s) 406
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNI CCWGG 1 cut(s) 59
BstPAI GACNNNNGTC 1 cut(s) 59
BstSCI CCNGG 2 cut(s) 57, 302
BstV1I GCAGC 4 cut(s) 17, 88, 301, 577
BstV2I GAAGAC 2 cut(s) 59, 131
BsuRI GGCC 3 cut(s) 237, 348, 472
BtsCI GGATG 3 cut(s) 43, 337, 592
BtsIMutI CAGTG 2 cut(s) 390, 559
CaiI CAGNNNCTG 1 cut(s) 12
Cfr13I GGNCC 2 cut(s) 227, 347
CseI GACGC 3 cut(s) 64, 76, 125
Csp6I GTAC 4 cut(s) 22, 109, 204, 247
CviAII CATG 2 cut(s) 379, 567
CviQI GTAC 4 cut(s) 22, 109, 204, 247
DdeI CTNAG 2 cut(s) 5, 39
DpnI GATC 1 cut(s) 408
DpnII GATC 1 cut(s) 406
DraI TTTAAA 1 cut(s) 628
EaeI YGGCCR 2 cut(s) 235, 470
Eam1104I CTCTTC 1 cut(s) 422
EarI CTCTTC 1 cut(s) 422
Eco47I GGWCC 1 cut(s) 227
Eco57I CTGAAG 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 57
FaeI CATG 2 cut(s) 382, 570
FaiI YATR 7 cut(s) 269, 380, 440, 452, 501, 528, 568
FatI CATG 2 cut(s) 378, 566
FbaI TGATCA 1 cut(s) 406
Fnu4HI GCNGC 4 cut(s) 31, 102, 315, 591
FokI GGATG 3 cut(s) 30, 344, 599
Fsp4HI GCNGC 4 cut(s) 31, 102, 315, 591
GluI GCNGC 4 cut(s) 31, 102, 315, 591
HaeIII GGCC 3 cut(s) 237, 348, 472
HapII CCGG 2 cut(s) 72, 304
HgaI GACGC 3 cut(s) 64, 76, 125
Hin1I GRCGYC 2 cut(s) 75, 87
Hin1II CATG 2 cut(s) 382, 570
HincII GTYRAC 2 cut(s) 178, 609
HindII GTYRAC 2 cut(s) 178, 609
HindIII AAGCTT 1 cut(s) 278
HpaI GTTAAC 2 cut(s) 178, 609
HpaII CCGG 2 cut(s) 72, 304
HphI GGTGA 2 cut(s) 275, 364
Hpy166II GTNNAC 2 cut(s) 178, 609
Hpy188I TCNGA 1 cut(s) 497
Hpy188III TCNNGA 3 cut(s) 13, 152, 353
Hpy8I GTNNAC 2 cut(s) 178, 609
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 1 cut(s) 409
HpyCH4III ACNGT 1 cut(s) 554
HpyCH4V TGCA 1 cut(s) 488
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 2 cut(s) 5, 39
Hsp92I GRCGYC 2 cut(s) 75, 87
Hsp92II CATG 2 cut(s) 382, 570
KpnI GGTACC 1 cut(s) 25
Ksp22I TGATCA 1 cut(s) 406
KspAI GTTAAC 2 cut(s) 178, 609
Kzo9I GATC 1 cut(s) 406
LmnI GCTCC 2 cut(s) 74, 525
Lsp1109I GCAGC 4 cut(s) 17, 88, 301, 577
LweI GCATC 2 cut(s) 52, 577
MalI GATC 1 cut(s) 408
MboI GATC 1 cut(s) 406
MboII GAAGA 7 cut(s) 64, 131, 176, 361, 431, 439, 529
MfeI CAATTG 1 cut(s) 474
MlsI TGGCCA 2 cut(s) 237, 472
MluCI AATT 3 cut(s) 295, 474, 490
MluNI TGGCCA 2 cut(s) 237, 472
MmeI TCCRAC 2 cut(s) 205, 528
MnlI CCTC 6 cut(s) 44, 89, 360, 451, 504, 533
Mox20I TGGCCA 2 cut(s) 237, 472
MscI TGGCCA 2 cut(s) 237, 472
MseI TTAA 4 cut(s) 177, 531, 608, 627
MslI CAYNNNNRTG 1 cut(s) 377
Msp20I TGGCCA 2 cut(s) 237, 472
MspI CCGG 2 cut(s) 72, 304
MspR9I CCNGG 2 cut(s) 59, 304
MunI CAATTG 1 cut(s) 474
Mva1269I GAATGC 1 cut(s) 406
MvaI CCWGG 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 323
NciI CCSGG 1 cut(s) 304
NdeII GATC 1 cut(s) 406
NlaIII CATG 2 cut(s) 382, 570
NlaIV GGNNCC 2 cut(s) 23, 229
PctI GAATGC 1 cut(s) 406
PkrI GCNGC 4 cut(s) 32, 103, 316, 592
PshAI GACNNNNGTC 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 2 cut(s) 23, 229
PspPI GGNCC 2 cut(s) 227, 347
PstNI CAGNNNCTG 1 cut(s) 12
RsaI GTAC 4 cut(s) 23, 110, 205, 248
RsaNI GTAC 4 cut(s) 22, 109, 204, 247
RseI CAYNNNNRTG 1 cut(s) 377
SaqAI TTAA 4 cut(s) 177, 531, 608, 627
SatI GCNGC 4 cut(s) 31, 102, 315, 591
Sau3AI GATC 1 cut(s) 406
Sau96I GGNCC 2 cut(s) 227, 347
ScrFI CCNGG 2 cut(s) 59, 304
SfaNI GCATC 2 cut(s) 52, 577
SinI GGWCC 1 cut(s) 227
SmiMI CAYNNNNRTG 1 cut(s) 377
Sse9I AATT 3 cut(s) 295, 474, 490
SsiI CCGC 1 cut(s) 126
StyD4I CCNGG 2 cut(s) 57, 302
TaaI ACNGT 1 cut(s) 554
TaqI TCGA 1 cut(s) 573
TasI AATT 3 cut(s) 295, 474, 490
TatI WGTACW 2 cut(s) 108, 203
Tru1I TTAA 4 cut(s) 177, 531, 608, 627
Tru9I TTAA 4 cut(s) 177, 531, 608, 627
TscAI CASTG 2 cut(s) 397, 559
TseI GCWGC 4 cut(s) 30, 101, 314, 590
TspDTI ATGAA 2 cut(s) 256, 427
TspRI CASTG 2 cut(s) 397, 559
VpaK11BI GGWCC 1 cut(s) 227
XapI RAATTY 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.