Rmu_co8416553.1_g000001

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8416553.1
OG0013374
Physical Location & Seq
Reverse (-)
479 .. 1079
601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8416553.1_g000001.1.cds

Sequence Viewer

Length: 495 bp
atgcagcacgacaaagctgaagatttcaaggttaactggaaacgagtagctatcacaagtacatttggctttgcttttgttggacctgttggccatttctggtacgaaaacttggacaagttcataaagttgaagcttcacctaaaacctaactcagcccggtttgttgctgctaaagtggcaatggatggtcttatctttggcccccttgatttgttggtgttcttcacctacatgggattttccactggcaagaatgctgatcaagtgaaggaagatttgaagagagatttcataccagccctcatgttggagggtggcgtgtggccaattgttcaagttgcaaatttcagatatgttcctgtgaggtatcagctcctctatgttaatatcttctgcctgttggacagtgcctttttgtcatgggtcgagcaacaaaaggatgctgcttggaagcaatggttaacatcttttgcatcttttaaagaccgataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

164

Amino Acids

19.01

Weight (kDa)

9.16

Isoelectric Point (pI)

16.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013374)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24570 AT3G24570
fragaria_vesca FvH4_1g04560
malus_domestica MD02G1045400.v1.1
prunus_persica Prupe.7G232500_v2.0.a1 Prupe.7G232500_v2.0.a1
pyrus_communis pycom02g03780
rosa_chinensis RchiOBHm_Chr2g0090261
rosa_laevigata RLG00000016092
rosa_multiflora Rmu_co8416553.1_g000001 Rmu_sc0004966.1_g000009
rosa_roxburghii Rroxscaffold_2G00151340
rosa_rugosa Rorug02G0006000
rosa_samantha Rh2AG051900 Rh2BG050500 Rh2CG052700 Rh2DG051800
rosa_wichuraiana Rw2G004500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 91, 326
AcsI RAATTY 1 cut(s) 346
AcuI CTGAAG 1 cut(s) 39
AfaI GTAC 2 cut(s) 61, 104
AfiI CCNNNNNNNGG 1 cut(s) 310
AgsI TTSAA 4 cut(s) 28, 133, 283, 338
AluBI AGCT 4 cut(s) 17, 50, 136, 376
AluI AGCT 4 cut(s) 17, 50, 136, 376
AoxI GGCC 3 cut(s) 91, 202, 326
ApeKI GCWGC 3 cut(s) 4, 170, 446
ApoI RAATTY 1 cut(s) 346
AspS9I GGNCC 2 cut(s) 83, 203
AsuC2I CCSGG 1 cut(s) 160
AsuHPI GGTGA 2 cut(s) 131, 220
AvaII GGWCC 1 cut(s) 83
BalI TGGCCA 2 cut(s) 93, 328
BbvI GCAGC 3 cut(s) 16, 157, 433
BccI CCATC 1 cut(s) 182
BclI TGATCA 1 cut(s) 262
BcnI CCSGG 1 cut(s) 160
BisI GCNGC 3 cut(s) 5, 171, 447
BlsI GCNGC 3 cut(s) 6, 172, 448
Bme1390I CCNGG 1 cut(s) 160
Bme18I GGWCC 1 cut(s) 83
BmgT120I GGNCC 2 cut(s) 83, 203
BmiI GGNNCC 1 cut(s) 205
BmrFI CCNGG 1 cut(s) 160
BmsI GCATC 2 cut(s) 433, 485
BpuMI CCSGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 1 cut(s) 310
Bse1I ACTGG 2 cut(s) 41, 253
Bse3DI GCAATG 2 cut(s) 189, 464
BseGI GGATG 2 cut(s) 193, 448
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMI GCAATG 2 cut(s) 189, 464
BseMII CTCAG 1 cut(s) 168
BseNI ACTGG 2 cut(s) 41, 253
BseRI GAGGAG 1 cut(s) 368
BseXI GCAGC 3 cut(s) 16, 157, 433
BshFI GGCC 3 cut(s) 93, 204, 328
BsiSI CCGG 1 cut(s) 160
BslI CCNNNNNNNGG 1 cut(s) 310
BsmI GAATGC 1 cut(s) 262
BsnI GGCC 3 cut(s) 93, 204, 328
Bsp143I GATC 1 cut(s) 262
BspANI GGCC 3 cut(s) 93, 204, 328
BspCNI CTCAG 1 cut(s) 167
BspLI GGNNCC 1 cut(s) 205
BsrDI GCAATG 2 cut(s) 189, 464
BsrI ACTGG 2 cut(s) 41, 253
BssMI GATC 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 410
Bst6I CTCTTC 1 cut(s) 278
BstDEI CTNAG 1 cut(s) 154
BstF5I GGATG 2 cut(s) 193, 448
BstKTI GATC 1 cut(s) 265
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 158
BstV1I GCAGC 3 cut(s) 16, 157, 433
BsuRI GGCC 3 cut(s) 93, 204, 328
BtsCI GGATG 2 cut(s) 193, 448
BtsIMutI CAGTG 2 cut(s) 246, 415
Cfr13I GGNCC 2 cut(s) 83, 203
Csp6I GTAC 2 cut(s) 60, 103
CviAII CATG 3 cut(s) 235, 307, 423
CviQI GTAC 2 cut(s) 60, 103
DdeI CTNAG 1 cut(s) 154
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
DraI TTTAAA 1 cut(s) 484
EaeI YGGCCR 2 cut(s) 91, 326
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
Eco47I GGWCC 1 cut(s) 83
Eco57I CTGAAG 1 cut(s) 39
FaeI CATG 3 cut(s) 238, 310, 426
FaiI YATR 7 cut(s) 125, 236, 296, 308, 357, 384, 424
FatI CATG 3 cut(s) 234, 306, 422
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 3 cut(s) 5, 171, 447
FokI GGATG 2 cut(s) 200, 455
Fsp4HI GCNGC 3 cut(s) 5, 171, 447
GluI GCNGC 3 cut(s) 5, 171, 447
HaeIII GGCC 3 cut(s) 93, 204, 328
HapII CCGG 1 cut(s) 160
Hin1II CATG 3 cut(s) 238, 310, 426
HincII GTYRAC 2 cut(s) 34, 465
HindII GTYRAC 2 cut(s) 34, 465
HindIII AAGCTT 1 cut(s) 134
HpaI GTTAAC 2 cut(s) 34, 465
HpaII CCGG 1 cut(s) 160
HphI GGTGA 2 cut(s) 131, 220
Hpy166II GTNNAC 2 cut(s) 34, 465
Hpy188I TCNGA 1 cut(s) 353
Hpy8I GTNNAC 2 cut(s) 34, 465
HpyAV CCTTC 1 cut(s) 265
HpyCH4III ACNGT 1 cut(s) 410
HpyCH4V TGCA 3 cut(s) 4, 344, 476
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 1 cut(s) 154
Hsp92II CATG 3 cut(s) 238, 310, 426
Ksp22I TGATCA 1 cut(s) 262
KspAI GTTAAC 2 cut(s) 34, 465
Kzo9I GATC 1 cut(s) 262
LmnI GCTCC 1 cut(s) 381
LpnPI CCDG 8 cut(s) 22, 85, 99, 173, 234, 312, 375, 413
Lsp1109I GCAGC 3 cut(s) 16, 157, 433
LweI GCATC 2 cut(s) 433, 485
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 5 cut(s) 32, 217, 287, 295, 385
MfeI CAATTG 1 cut(s) 330
MlsI TGGCCA 2 cut(s) 93, 328
MluCI AATT 2 cut(s) 330, 346
MluNI TGGCCA 2 cut(s) 93, 328
MmeI TCCRAC 3 cut(s) 61, 291, 384
MnlI CCTC 4 cut(s) 307, 314, 360, 389
Mox20I TGGCCA 2 cut(s) 93, 328
MscI TGGCCA 2 cut(s) 93, 328
MseI TTAA 4 cut(s) 33, 387, 464, 483
MslI CAYNNNNRTG 1 cut(s) 233
Msp20I TGGCCA 2 cut(s) 93, 328
MspI CCGG 1 cut(s) 160
MspR9I CCNGG 1 cut(s) 160
MunI CAATTG 1 cut(s) 330
Mva1269I GAATGC 1 cut(s) 262
MwoI GCNNNNNNNGC 1 cut(s) 179
NciI CCSGG 1 cut(s) 160
NdeII GATC 1 cut(s) 262
NlaIII CATG 3 cut(s) 238, 310, 426
NlaIV GGNNCC 1 cut(s) 205
PctI GAATGC 1 cut(s) 262
PkrI GCNGC 3 cut(s) 6, 172, 448
PspN4I GGNNCC 1 cut(s) 205
PspPI GGNCC 2 cut(s) 83, 203
RsaI GTAC 2 cut(s) 61, 104
RsaNI GTAC 2 cut(s) 60, 103
RseI CAYNNNNRTG 1 cut(s) 233
SaqAI TTAA 4 cut(s) 33, 387, 464, 483
SatI GCNGC 3 cut(s) 5, 171, 447
Sau3AI GATC 1 cut(s) 262
Sau96I GGNCC 2 cut(s) 83, 203
ScrFI CCNGG 1 cut(s) 160
SfaNI GCATC 2 cut(s) 433, 485
SinI GGWCC 1 cut(s) 83
SmiMI CAYNNNNRTG 1 cut(s) 233
Sse9I AATT 2 cut(s) 330, 346
StyD4I CCNGG 1 cut(s) 158
TaaI ACNGT 1 cut(s) 410
TaqI TCGA 1 cut(s) 429
TasI AATT 2 cut(s) 330, 346
TatI WGTACW 1 cut(s) 59
Tru1I TTAA 4 cut(s) 33, 387, 464, 483
Tru9I TTAA 4 cut(s) 33, 387, 464, 483
TscAI CASTG 2 cut(s) 253, 415
TseI GCWGC 3 cut(s) 4, 170, 446
TspDTI ATGAA 2 cut(s) 112, 283
TspRI CASTG 2 cut(s) 253, 415
VpaK11BI GGWCC 1 cut(s) 83
XapI RAATTY 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.