Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011491

Physical Location & Seq

Genomic Coordinates Forward (+)

9132068 .. 9134099

Gene Structure 2032 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G25070.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCACGTTCGAATGTACCAAAATTTGGAAACTGGGAAGCTGAGGAGAATGTTCCTTACACAGCTTACTTTGACAAAGCTCGTAAGACTCGAGCACCCGGTAGCAAGATCATGAACCCGAATGACCCGGAGTATAACTCTGACTCTCAATCACAAGCTCCTCCTCATCCTCCTTCTTCCAGAACCAAACCTGAGCAAGTTGACACGGTTAGAAGATCACGTGAGCATATGAGAAGCCGAGAAGAGAGCGAGTTGAAACAGTTTGGTGATGCTGGTGGTTCATCAAATGAAGCTGCTAACAAAAGACAAGGAAGAGCTTCTCAGAACAATAGTTATGACAACAAGTCACCTTTGCATAAGAATTCTTATGATGGTACTGGAAAATCTAGGCCTAAACCTACCAACCTTAGAGCTGATGAAAGTCCTGAAAAAGTCACAGTGGTGCCTAAATTCGGTGACTGGGACGAGAACAACCCGTCATCAGCTGACGGATACACGCATATCTTCAATAAAGTCCGTGAAGAGAGAAGTTCTGGAGCAAATGTGAGTGGATCTTCAAGAACGCCGACTCATCAAAGCTCCCGTAACCCGAACAACACTTCCTCATGTTGCTGCTTTGGCTTTGGAGGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002237 GO:0002253 GO:0002376 GO:0002682 GO:0002683 GO:0002684 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010204 GO:0010363 GO:0010941 GO:0012501 GO:0016020 GO:0016310 GO:0019538 GO:0019897 GO:0019898 GO:0023052 GO:0031347 GO:0031348 GO:0031349 GO:0033554 GO:0034050 GO:0034051 GO:0036211 GO:0042221 GO:0042742 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0045824 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050777 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0080135 GO:0098542 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

AvrRpt-cleavage

Protein Analysis

211

Amino Acids

23.37

Weight (kDa)

9.24

Isoelectric Point (pI)

69.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AvrRpt-cleavage	PF05627	15 - 44	2e-08	Cleavage site for pathogenic type III effector avirulence factor Avr
AvrRpt-cleavage	PF05627	158 - 189	2.2e-20	Cleavage site for pathogenic type III effector avirulence factor Avr

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25070 AT3G25070
fragaria_vesca	FvH4_2g18650 FvH4_2g18650 FvH4_2g18650
malus_domestica	MD05G1172400.v1.1 MD10G1160600.v1.1
prunus_persica	Prupe.8G199800_v2.0.a1
pyrus_communis	pycom05g15900 pycom10g13880
rosa_chinensis	RchiOBHm_Chr6g0284211
rosa_laevigata	RLG00000012756
rosa_multiflora	Rmu_sc0002698.1_g000030
rosa_roxburghii	Rroxscaffold_7G00184780
rosa_rugosa	Rorug06G0161900
rosa_samantha	Rh6AG274800 Rh6BG275300 Rh6CG277000 Rh6DG269700
rosa_wichuraiana	Rw6G023640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	442
AccB7I	CCANNNNNTGG	1 cut(s)	26
AclWI	GGATC	1 cut(s)	559
AcsI	RAATTY	3 cut(s)	23, 361, 449
AcvI	CACGTG	1 cut(s)	221
AfaI	GTAC	2 cut(s)	18, 376
AfiI	CCNNNNNNNGG	2 cut(s)	26, 452
AgsI	TTSAA	3 cut(s)	256, 508, 558
AhdI	GACNNNNNGTC	1 cut(s)	343
AleI	CACNNNNGTG	1 cut(s)	440
AloI	GAACNNNNNNTCC	2 cut(s)	584, 616
AluBI	AGCT	9 cut(s)	41, 65, 80, 158, 293, 317, 413, 485, 579
AluI	AGCT	9 cut(s)	41, 65, 80, 158, 293, 317, 413, 485, 579
Alw21I	GWGCWC	1 cut(s)	97
AlwI	GGATC	1 cut(s)	559
Ama87I	CYCGRG	1 cut(s)	90
AoxI	GGCC	1 cut(s)	389
ApeKI	GCWGC	2 cut(s)	293, 612
ApoI	RAATTY	3 cut(s)	23, 361, 449
Asp700I	GAANNNNTTC	1 cut(s)	316
AsuC2I	CCSGG	2 cut(s)	99, 128
AsuHPI	GGTGA	3 cut(s)	278, 339, 467
AsuII	TTCGAA	1 cut(s)	11
AvaI	CYCGRG	1 cut(s)	90
BanI	GGYRCC	1 cut(s)	442
BbrPI	CACGTG	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	97
BbvCI	CCTCAGC	1 cut(s)	42
BbvI	GCAGC	2 cut(s)	280, 599
BccI	CCATC	1 cut(s)	365
BciVI	GTATCC	1 cut(s)	485
BcnI	CCSGG	2 cut(s)	99, 128
BfaI	CTAG	1 cut(s)	387
BfuI	GTATCC	1 cut(s)	485
BisI	GCNGC	2 cut(s)	294, 613
BlsI	GCNGC	2 cut(s)	295, 614
Bme1390I	CCNGG	2 cut(s)	99, 128
BmeRI	GACNNNNNGTC	1 cut(s)	343
BmeT110I	CYCGRG	1 cut(s)	90
BmiI	GGNNCC	1 cut(s)	444
BmrFI	CCNGG	2 cut(s)	99, 128
BmrI	ACTGGG	2 cut(s)	43, 469
BmsI	GCATC	1 cut(s)	259
BmuI	ACTGGG	2 cut(s)	43, 469
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpmI	CTGGAG	1 cut(s)	555
Bpu10I	CCTNAGC	2 cut(s)	42, 192
Bpu14I	TTCGAA	1 cut(s)	11
BpuMI	CCSGG	2 cut(s)	99, 128
BsaAI	YACGTR	1 cut(s)	221
BsaXI	ACNNNNNCTCC	2 cut(s)	528, 558
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 452
Bse1I	ACTGG	3 cut(s)	38, 382, 464
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	2 cut(s)	26, 452
BseMII	CTCAG	3 cut(s)	33, 183, 335
BseNI	ACTGG	3 cut(s)	38, 382, 464
BseRI	GAGGAG	3 cut(s)	59, 150, 153
BseXI	GCAGC	2 cut(s)	280, 599
BshFI	GGCC	1 cut(s)	391
BshNI	GGYRCC	1 cut(s)	442
BsiHKAI	GWGCWC	1 cut(s)	97
BsiHKCI	CYCGRG	1 cut(s)	90
BsiSI	CCGG	2 cut(s)	99, 128
BslFI	GGGAC	1 cut(s)	476
BslI	CCNNNNNNNGG	2 cut(s)	26, 452
BsmFI	GGGAC	1 cut(s)	476
BsnI	GGCC	1 cut(s)	391
BsoBI	CYCGRG	1 cut(s)	90
Bsp119I	TTCGAA	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp143I	GATC	3 cut(s)	108, 215, 551
BspANI	GGCC	1 cut(s)	391
BspCNI	CTCAG	3 cut(s)	34, 184, 334
BspHI	TCATGA	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	444
BspPI	GGATC	1 cut(s)	559
BspQI	GCTCTTC	1 cut(s)	307
BspT104I	TTCGAA	1 cut(s)	11
BspT107I	GGYRCC	1 cut(s)	442
BsrI	ACTGG	3 cut(s)	38, 382, 464
BssMI	GATC	3 cut(s)	108, 215, 551
Bst4CI	ACNGT	3 cut(s)	208, 261, 439
Bst6I	CTCTTC	3 cut(s)	237, 307, 516
BstBAI	YACGTR	1 cut(s)	221
BstBI	TTCGAA	1 cut(s)	11
BstDEI	CTNAG	4 cut(s)	42, 192, 321, 407
BstF5I	GGATG	1 cut(s)	166
BstKTI	GATC	3 cut(s)	111, 218, 554
BstMBI	GATC	3 cut(s)	108, 215, 551
BstMWI	GCNNNNNNNGC	1 cut(s)	618
BstSCI	CCNGG	2 cut(s)	97, 126
BstV1I	GCAGC	2 cut(s)	280, 599
BstX2I	RGATCY	1 cut(s)	551
BstYI	RGATCY	1 cut(s)	551
BsuI	GTATCC	1 cut(s)	485
BsuRI	GGCC	1 cut(s)	391
BtsCI	GGATG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	444
CciI	TCATGA	1 cut(s)	111
Csp6I	GTAC	2 cut(s)	17, 375
CviAII	CATG	2 cut(s)	112, 606
CviQI	GTAC	2 cut(s)	17, 375
DdeI	CTNAG	4 cut(s)	42, 192, 321, 407
DpnI	GATC	3 cut(s)	110, 217, 553
DpnII	GATC	3 cut(s)	108, 215, 551
DriI	GACNNNNNGTC	1 cut(s)	343
Eam1104I	CTCTTC	3 cut(s)	237, 307, 516
Eam1105I	GACNNNNNGTC	1 cut(s)	343
EarI	CTCTTC	3 cut(s)	237, 307, 516
Eco147I	AGGCCT	1 cut(s)	391
Eco72I	CACGTG	1 cut(s)	221
Eco88I	CYCGRG	1 cut(s)	90
EcoRI	GAATTC	1 cut(s)	361
FaeI	CATG	2 cut(s)	115, 609
FaiI	YATR	9 cut(s)	113, 135, 228, 230, 336, 357, 369, 501, 607
FaqI	GGGAC	1 cut(s)	476
FatI	CATG	2 cut(s)	111, 605
FauNDI	CATATG	1 cut(s)	228
Fnu4HI	GCNGC	2 cut(s)	294, 613
FokI	GGATG	1 cut(s)	153
Fsp4HI	GCNGC	2 cut(s)	294, 613
FspBI	CTAG	1 cut(s)	387
GluI	GCNGC	2 cut(s)	294, 613
GsuI	CTGGAG	1 cut(s)	555
HaeIII	GGCC	1 cut(s)	391
HapII	CCGG	2 cut(s)	99, 128
Hin1II	CATG	2 cut(s)	115, 609
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	3 cut(s)	88, 143, 568
HpaII	CCGG	2 cut(s)	99, 128
HphI	GGTGA	3 cut(s)	278, 339, 467
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	2 cut(s)	142, 324
Hpy188III	TCNNGA	5 cut(s)	112, 180, 425, 534, 558
Hpy8I	GTNNAC	1 cut(s)	202
HpyAV	CCTTC	1 cut(s)	183
HpyCH4III	ACNGT	3 cut(s)	208, 261, 439
HpyCH4IV	ACGT	2 cut(s)	7, 220
HpyCH4V	TGCA	1 cut(s)	355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	618
HpyF3I	CTNAG	4 cut(s)	42, 192, 321, 407
HpySE526I	ACGT	2 cut(s)	7, 220
Hsp92II	CATG	2 cut(s)	115, 609
Kzo9I	GATC	3 cut(s)	108, 215, 551
LguI	GCTCTTC	1 cut(s)	307
LmnI	GCTCC	3 cut(s)	163, 536, 584
Lsp1109I	GCAGC	2 cut(s)	280, 599
LweI	GCATC	1 cut(s)	259
MaeI	CTAG	1 cut(s)	387
MaeII	ACGT	2 cut(s)	7, 220
MaeIII	GTNAC	4 cut(s)	345, 433, 455, 584
MalI	GATC	3 cut(s)	110, 217, 553
MboI	GATC	3 cut(s)	108, 215, 551
MboII	GAAGA	7 cut(s)	168, 225, 254, 324, 496, 533, 546
MflI	RGATCY	1 cut(s)	551
MhlI	GDGCHC	1 cut(s)	97
MluCI	AATT	3 cut(s)	23, 361, 449
MlyI	GAGTC	3 cut(s)	82, 137, 562
MnlI	CCTC	6 cut(s)	37, 171, 174, 180, 613, 620
MroXI	GAANNNNTTC	1 cut(s)	316
MslI	CAYNNNNRTG	1 cut(s)	440
MspA1I	CMGCKG	1 cut(s)	485
MspI	CCGG	2 cut(s)	99, 128
MspR9I	CCNGG	2 cut(s)	99, 128
MwoI	GCNNNNNNNGC	1 cut(s)	618
NciI	CCSGG	2 cut(s)	99, 128
NdeI	CATATG	1 cut(s)	228
NdeII	GATC	3 cut(s)	108, 215, 551
NlaIII	CATG	2 cut(s)	115, 609
NlaIV	GGNNCC	1 cut(s)	444
NmeAIII	GCCGAG	1 cut(s)	263
NmuCI	GTSAC	3 cut(s)	345, 433, 455
NspV	TTCGAA	1 cut(s)	11
OliI	CACNNNNGTG	1 cut(s)	440
PaeR7I	CTCGAG	1 cut(s)	90
PagI	TCATGA	1 cut(s)	111
PceI	AGGCCT	1 cut(s)	391
PciSI	GCTCTTC	1 cut(s)	307
PcsI	WCGNNNNNNNCGW	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	316
PflMI	CCANNNNNTGG	1 cut(s)	26
PkrI	GCNGC	2 cut(s)	295, 614
PleI	GAGTC	3 cut(s)	82, 137, 562
PmaCI	CACGTG	1 cut(s)	221
PmlI	CACGTG	1 cut(s)	221
PpsI	GAGTC	3 cut(s)	82, 137, 562
Ppu21I	YACGTR	1 cut(s)	221
PspCI	CACGTG	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	444
PspXI	VCTCGAGB	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	551
PvuII	CAGCTG	1 cut(s)	485
RsaI	GTAC	2 cut(s)	18, 376
RsaNI	GTAC	2 cut(s)	17, 375
RseI	CAYNNNNRTG	1 cut(s)	440
SapI	GCTCTTC	1 cut(s)	307
SatI	GCNGC	2 cut(s)	294, 613
Sau3AI	GATC	3 cut(s)	108, 215, 551
SchI	GAGTC	3 cut(s)	82, 137, 562
ScrFI	CCNGG	2 cut(s)	99, 128
SduI	GDGCHC	1 cut(s)	97
SfaNI	GCATC	1 cut(s)	259
Sfr274I	CTCGAG	1 cut(s)	90
SfuI	TTCGAA	1 cut(s)	11
SlaI	CTCGAG	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
Sse9I	AATT	3 cut(s)	23, 361, 449
SseBI	AGGCCT	1 cut(s)	391
SspMI	CTAG	1 cut(s)	387
StuI	AGGCCT	1 cut(s)	391
StyD4I	CCNGG	2 cut(s)	97, 126
TaaI	ACNGT	3 cut(s)	208, 261, 439
TaiI	ACGT	2 cut(s)	10, 223
TaqI	TCGA	2 cut(s)	11, 91
TasI	AATT	3 cut(s)	23, 361, 449
TscAI	CASTG	1 cut(s)	444
TseFI	GTSAC	3 cut(s)	345, 433, 455
TseI	GCWGC	2 cut(s)	293, 612
Tsp45I	GTSAC	3 cut(s)	345, 433, 455
TspDTI	ATGAA	4 cut(s)	128, 270, 303, 432
TspGWI	ACGGA	2 cut(s)	504, 506
TspRI	CASTG	1 cut(s)	444
Van91I	CCANNNNNTGG	1 cut(s)	26
XapI	RAATTY	3 cut(s)	23, 361, 449
XhoI	CTCGAG	1 cut(s)	90
XmnI	GAANNNNTTC	1 cut(s)	316
XspI	CTAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.