Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0011491

Physical Location & Seq

Genomic Coordinates Reverse (-)

19354153 .. 19355141

Gene Structure 989 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g15900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGATTAATCCAAATGACCCCCAAGAGAACCCGGACATCCTTTCTGACATATCTGCATCTTCTCCTCCAAAAGTTAGACCAGAACCTGAAAAACCAGTTCATGAACGGAGAAGAAGCAGGGAGGATAATGACCTAAGATTTGCCAACTCCCCAGCCCAGCGCAGAAATTCTGGTGAATCAGCACATCAACCTAACAGAGGCCGTGGAGTTAGTTCTGGGGATACCCATCAAAGGCCTGCACGACCAAGTGCTGGGTCTGAGAACAGTGTTGAGCGTTCACCTCTCCATCGCAATGCGAGGGTCACAGGACGAAATTCACCCTCCTGGGAAGGAAAGGCTTCATATGAATCTAGCCATGGCACTCCTGGAAGGTCCCGCCTCAAACCTCGCGATGAAAGTCCTGAGAAAGGTGCTGCTGTTCCGAAATTTGGCGAGTGGGATGAAAATGACCCGGCATCAGCTGATGGTTTCACTCACATATTCAACAAAGTGCGGGAGGAGCGGGCGGGAAAAGTACCAGGGACTCCTTCTCAGCCGTCTTACCAAGATGCAAGAAAGCAGGGTTCCAATGACAGTGTCAAGAGTTGCTGCTTTCCATGGAGCAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002237 GO:0002253 GO:0002376 GO:0002682 GO:0002683 GO:0002684 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010204 GO:0010363 GO:0010941 GO:0012501 GO:0016020 GO:0016310 GO:0019538 GO:0019897 GO:0019898 GO:0023052 GO:0031347 GO:0031348 GO:0031349 GO:0033554 GO:0034050 GO:0034051 GO:0036211 GO:0042221 GO:0042742 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0045824 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050777 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0080135 GO:0098542 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

AvrRpt-cleavage

Protein Analysis

204

Amino Acids

22.45

Weight (kDa)

9.54

Isoelectric Point (pI)

70.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AvrRpt-cleavage	PF05627	135 - 168	6.5e-21	Cleavage site for pathogenic type III effector avirulence factor Avr

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25070 AT3G25070
fragaria_vesca	FvH4_2g18650 FvH4_2g18650 FvH4_2g18650
malus_domestica	MD05G1172400.v1.1 MD10G1160600.v1.1
prunus_persica	Prupe.8G199800_v2.0.a1
pyrus_communis	pycom05g15900 pycom10g13880
rosa_chinensis	RchiOBHm_Chr6g0284211
rosa_laevigata	RLG00000012756
rosa_multiflora	Rmu_sc0002698.1_g000030
rosa_roxburghii	Rroxscaffold_7G00184780
rosa_rugosa	Rorug06G0161900
rosa_samantha	Rh6AG274800 Rh6BG275300 Rh6CG277000 Rh6DG269700
rosa_wichuraiana	Rw6G023640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	251
AccBSI	CCGCTC	1 cut(s)	502
AccII	CGCG	1 cut(s)	390
AciI	CCGC	4 cut(s)	376, 493, 502, 506
AcsI	RAATTY	3 cut(s)	166, 313, 425
AfaI	GTAC	1 cut(s)	516
AfiI	CCNNNNNNNGG	5 cut(s)	197, 231, 251, 407, 428
AgsI	TTSAA	1 cut(s)	484
AjnI	CCWGG	3 cut(s)	323, 364, 517
AluBI	AGCT	1 cut(s)	461
AluI	AGCT	1 cut(s)	461
AlwNI	CAGNNNCTG	1 cut(s)	86
AoxI	GGCC	2 cut(s)	199, 233
ApeKI	GCWGC	2 cut(s)	413, 588
ApoI	RAATTY	3 cut(s)	166, 313, 425
ArsI	GACNNNNNNTTYG	2 cut(s)	122, 154
AseI	ATTAAT	1 cut(s)	6
Asp700I	GAANNNNTTC	1 cut(s)	337
AspLEI	GCGC	1 cut(s)	162
AspS9I	GGNCC	1 cut(s)	372
AsuC2I	CCSGG	2 cut(s)	32, 452
AsuHPI	GGTGA	3 cut(s)	185, 270, 309
AvaII	GGWCC	1 cut(s)	372
BbvI	GCAGC	2 cut(s)	400, 575
BccI	CCATC	3 cut(s)	234, 294, 458
BceAI	ACGGC	2 cut(s)	186, 520
BciT130I	CCWGG	3 cut(s)	325, 366, 519
BciVI	GTATCC	1 cut(s)	214
BcnI	CCSGG	2 cut(s)	32, 452
BfaI	CTAG	1 cut(s)	351
BfuI	GTATCC	1 cut(s)	214
BisI	GCNGC	2 cut(s)	414, 589
BlsI	GCNGC	2 cut(s)	415, 590
Bme1390I	CCNGG	5 cut(s)	32, 325, 366, 452, 519
Bme18I	GGWCC	1 cut(s)	372
BmgT120I	GGNCC	1 cut(s)	372
BmiI	GGNNCC	2 cut(s)	374, 565
BmrFI	CCNGG	5 cut(s)	32, 325, 366, 452, 519
BmsI	GCATC	3 cut(s)	65, 464, 538
BpuMI	CCSGG	2 cut(s)	32, 452
BsaBI	GATNNNNATC	1 cut(s)	225
BsaJI	CCNNGG	5 cut(s)	202, 324, 355, 518, 596
Bsc4I	CCNNNNNNNGG	5 cut(s)	197, 231, 251, 407, 428
Bse1I	ACTGG	1 cut(s)	95
Bse3DI	GCAATG	1 cut(s)	298
Bse8I	GATNNNNATC	1 cut(s)	225
BseBI	CCWGG	3 cut(s)	325, 366, 519
BseDI	CCNNGG	5 cut(s)	202, 324, 355, 518, 596
BseGI	GGATG	2 cut(s)	36, 445
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	5 cut(s)	197, 231, 251, 407, 428
BseMI	GCAATG	1 cut(s)	298
BseMII	CTCAG	3 cut(s)	249, 393, 545
BseNI	ACTGG	1 cut(s)	95
BseRI	GAGGAG	2 cut(s)	54, 512
BseXI	GCAGC	2 cut(s)	400, 575
BseYI	CCCAGC	3 cut(s)	151, 156, 251
BsgI	GTGCAG	1 cut(s)	222
Bsh1236I	CGCG	1 cut(s)	390
BshFI	GGCC	2 cut(s)	201, 235
BsiSI	CCGG	2 cut(s)	32, 452
BslFI	GGGAC	2 cut(s)	358, 535
BslI	CCNNNNNNNGG	5 cut(s)	197, 231, 251, 407, 428
BsmFI	GGGAC	2 cut(s)	358, 535
BsnI	GGCC	2 cut(s)	201, 235
Bsp19I	CCATGG	2 cut(s)	355, 596
Bsp68I	TCGCGA	1 cut(s)	390
BspACI	CCGC	4 cut(s)	376, 493, 502, 506
BspANI	GGCC	2 cut(s)	201, 235
BspCNI	CTCAG	3 cut(s)	250, 394, 544
BspFNI	CGCG	1 cut(s)	390
BspHI	TCATGA	1 cut(s)	100
BspLI	GGNNCC	2 cut(s)	374, 565
BsrBI	CCGCTC	1 cut(s)	502
BsrDI	GCAATG	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	95
BssECI	CCNNGG	5 cut(s)	202, 324, 355, 518, 596
BssT1I	CCWWGG	2 cut(s)	355, 596
Bst2UI	CCWGG	3 cut(s)	325, 366, 519
Bst4CI	ACNGT	2 cut(s)	266, 575
BstC8I	GCNNGC	2 cut(s)	237, 504
BstDEI	CTNAG	4 cut(s)	134, 258, 402, 531
BstDSI	CCRYGG	3 cut(s)	202, 355, 596
BstENI	CCTNNNNNAGG	2 cut(s)	195, 405
BstF5I	GGATG	2 cut(s)	36, 445
BstFNI	CGCG	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	162
BstMWI	GCNNNNNNNGC	1 cut(s)	499
BstNI	CCWGG	3 cut(s)	325, 366, 519
BstSCI	CCNGG	5 cut(s)	30, 323, 364, 450, 517
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	2 cut(s)	400, 575
BsuI	GTATCC	1 cut(s)	214
BsuRI	GGCC	2 cut(s)	201, 235
BtgI	CCRYGG	3 cut(s)	202, 355, 596
BtgZI	GCGATG	2 cut(s)	272, 405
BtsCI	GGATG	2 cut(s)	36, 445
BtsIMutI	CAGTG	2 cut(s)	271, 580
BtuMI	TCGCGA	1 cut(s)	390
Cac8I	GCNNGC	2 cut(s)	237, 504
CaiI	CAGNNNCTG	1 cut(s)	86
CciI	TCATGA	1 cut(s)	100
CfoI	GCGC	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	372
Csp6I	GTAC	1 cut(s)	515
CviAII	CATG	3 cut(s)	101, 356, 597
CviJI	RGCY	7 cut(s)	155, 201, 235, 338, 354, 461, 535
CviKI_1	RGCY	7 cut(s)	155, 201, 235, 338, 354, 461, 535
CviQI	GTAC	1 cut(s)	515
DdeI	CTNAG	4 cut(s)	134, 258, 402, 531
Eco130I	CCWWGG	2 cut(s)	355, 596
Eco147I	AGGCCT	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	372
EcoNI	CCTNNNNNAGG	2 cut(s)	195, 405
EcoO109I	RGGNCCY	1 cut(s)	372
EcoRII	CCWGG	3 cut(s)	323, 364, 517
EcoT14I	CCWWGG	2 cut(s)	355, 596
ErhI	CCWWGG	2 cut(s)	355, 596
FaeI	CATG	3 cut(s)	104, 359, 600
FaiI	YATR	7 cut(s)	50, 102, 343, 345, 357, 479, 598
FaqI	GGGAC	2 cut(s)	358, 535
FatI	CATG	3 cut(s)	100, 355, 596
FauI	CCCGC	4 cut(s)	383, 486, 495, 499
FauNDI	CATATG	1 cut(s)	343
Fnu4HI	GCNGC	2 cut(s)	414, 589
FokI	GGATG	2 cut(s)	23, 452
Fsp4HI	GCNGC	2 cut(s)	414, 589
FspBI	CTAG	1 cut(s)	351
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	2 cut(s)	414, 589
GsaI	CCCAGC	3 cut(s)	155, 160, 255
HaeIII	GGCC	2 cut(s)	201, 235
HapII	CCGG	2 cut(s)	32, 452
HhaI	GCGC	1 cut(s)	162
Hin1II	CATG	3 cut(s)	104, 359, 600
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HinfI	GANTC	3 cut(s)	176, 347, 523
HpaII	CCGG	2 cut(s)	32, 452
HphI	GGTGA	3 cut(s)	185, 270, 309
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188I	TCNGA	3 cut(s)	46, 259, 423
Hpy188III	TCNNGA	4 cut(s)	101, 389, 401, 580
Hpy8I	GTNNAC	1 cut(s)	278
HpyAV	CCTTC	3 cut(s)	323, 363, 537
HpyCH4III	ACNGT	2 cut(s)	266, 575
HpyCH4V	TGCA	3 cut(s)	56, 239, 551
HpyF10VI	GCNNNNNNNGC	1 cut(s)	499
HpyF3I	CTNAG	4 cut(s)	134, 258, 402, 531
Hsp92II	CATG	3 cut(s)	104, 359, 600
HspAI	GCGC	1 cut(s)	160
LmnI	GCTCC	2 cut(s)	499, 600
Lsp1109I	GCAGC	2 cut(s)	400, 575
LweI	GCATC	3 cut(s)	65, 464, 538
MaeI	CTAG	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	301
MbiI	CCGCTC	1 cut(s)	502
MboII	GAAGA	2 cut(s)	51, 123
MluCI	AATT	3 cut(s)	166, 313, 425
MlyI	GAGTC	1 cut(s)	517
MnlI	CCTC	9 cut(s)	75, 115, 191, 291, 291, 331, 389, 396, 490
MroXI	GAANNNNTTC	1 cut(s)	337
MseI	TTAA	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	461
MspI	CCGG	2 cut(s)	32, 452
MspR9I	CCNGG	5 cut(s)	32, 325, 366, 452, 519
MvaI	CCWGG	3 cut(s)	325, 366, 519
MvnI	CGCG	1 cut(s)	390
MwoI	GCNNNNNNNGC	1 cut(s)	499
NciI	CCSGG	2 cut(s)	32, 452
NcoI	CCATGG	2 cut(s)	355, 596
NdeI	CATATG	1 cut(s)	343
NlaIII	CATG	3 cut(s)	104, 359, 600
NlaIV	GGNNCC	2 cut(s)	374, 565
NmuCI	GTSAC	1 cut(s)	301
NruI	TCGCGA	1 cut(s)	390
PagI	TCATGA	1 cut(s)	100
PceI	AGGCCT	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	337
PfeI	GAWTC	2 cut(s)	176, 347
PflFI	GACNNNGTC	1 cut(s)	575
PflMI	CCANNNNNTGG	1 cut(s)	251
PfoI	TCCNGGA	1 cut(s)	364
PkrI	GCNGC	2 cut(s)	415, 590
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
PpuMI	RGGWCCY	1 cut(s)	372
PshBI	ATTAAT	1 cut(s)	6
Psp5II	RGGWCCY	1 cut(s)	372
Psp6I	CCWGG	3 cut(s)	323, 364, 517
PspFI	CCCAGC	3 cut(s)	151, 156, 251
PspGI	CCWGG	3 cut(s)	323, 364, 517
PspN4I	GGNNCC	2 cut(s)	374, 565
PspPI	GGNCC	1 cut(s)	372
PspPPI	RGGWCCY	1 cut(s)	372
PstNI	CAGNNNCTG	1 cut(s)	86
PsyI	GACNNNGTC	1 cut(s)	575
PvuII	CAGCTG	1 cut(s)	461
RruI	TCGCGA	1 cut(s)	390
RsaI	GTAC	1 cut(s)	516
RsaNI	GTAC	1 cut(s)	515
RseI	CAYNNNNRTG	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	2 cut(s)	414, 589
Sau96I	GGNCC	1 cut(s)	372
SchI	GAGTC	1 cut(s)	517
ScrFI	CCNGG	5 cut(s)	32, 325, 366, 452, 519
SetI	ASST	8 cut(s)	88, 135, 193, 283, 374, 388, 412, 463
SfaNI	GCATC	3 cut(s)	65, 464, 538
SinI	GGWCC	1 cut(s)	372
SmiMI	CAYNNNNRTG	1 cut(s)	291
Sse9I	AATT	3 cut(s)	166, 313, 425
SseBI	AGGCCT	1 cut(s)	235
SsiI	CCGC	4 cut(s)	376, 493, 502, 506
SspMI	CTAG	1 cut(s)	351
StuI	AGGCCT	1 cut(s)	235
StyD4I	CCNGG	5 cut(s)	30, 323, 364, 450, 517
StyI	CCWWGG	2 cut(s)	355, 596
TaaI	ACNGT	2 cut(s)	266, 575
TasI	AATT	3 cut(s)	166, 313, 425
TfiI	GAWTC	2 cut(s)	176, 347
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	2 cut(s)	271, 580
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	2 cut(s)	413, 588
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	6 cut(s)	89, 117, 330, 360, 408, 456
TspGWI	ACGGA	1 cut(s)	121
TspRI	CASTG	2 cut(s)	271, 580
Tth111I	GACNNNGTC	1 cut(s)	575
Van91I	CCANNNNNTGG	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	372
VspI	ATTAAT	1 cut(s)	6
XagI	CCTNNNNNAGG	2 cut(s)	195, 405
XapI	RAATTY	3 cut(s)	166, 313, 425
XcmI	CCANNNNNNNNNTGG	1 cut(s)	362
XmnI	GAANNNNTTC	1 cut(s)	337
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.