Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0011491

Physical Location & Seq

Genomic Coordinates Reverse (-)

25136810 .. 25140156

Gene Structure 3347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1160600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCACAACGTTCACATGTACCAAAGTTTGGCAATTGGGAAGACCAAGAAAGTGTTCCTTACACTGCCTATTTTGATAAGGCCCGTAAGGGTCGAACTGGTGTTGGGGGAAAGATGATTAATCCTAATGACCCCGAAGAGAATCCAGACATCCTCTCTGACACATCTGCATCATCTCCTCCAAAAGTTAGACCGGAACCAGGAAAACCAGTTCATGAACGGAGAAGAAGCAGGGAGGATAATGACCTGAGATTTGCCAACTCCCCAGCCCAGCGCAGAAGTTCTGGTGAACATCAACCTAACAGAGGCCGTGGGGTTAGTTCTGGTGAAACCCATCGAAGAGCTGCACGACCAAGTGCTGGGTCTGAGAACAGTGTTGAACGTTCACCTCTCCATCGCAATGCAAGGGTCTCAGGAAGAGATTCACCCTCCTGGGAAGGAAAGGCGTCATATGAAAGTAGCCATGGCACTCCTGCAAGATCCCGCCTCAAACCTCGTGATGAAAGTCCTGAGAAAGGTGCTGCTGTTCCCAAATTTGGCGAGTGGGATGAGAACGACCCGGCATCAGCTGATGGTTTCACTCATATATTCAACAAAGTGCGGGAGGAGAAGGCGGGAAAAGCACCAGGGACTCCTTCTCATCCGTCTTACCAAGATGCAAGGAAGCAGGGTTCCAATGACAGTGCCAAGTGTTGCTGCTTTCCATGGGGCAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002237 GO:0002253 GO:0002376 GO:0002682 GO:0002683 GO:0002684 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010204 GO:0010363 GO:0010941 GO:0012501 GO:0016020 GO:0016310 GO:0019538 GO:0019897 GO:0019898 GO:0023052 GO:0031347 GO:0031348 GO:0031349 GO:0033554 GO:0034050 GO:0034051 GO:0036211 GO:0042221 GO:0042742 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0045824 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050777 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0080135 GO:0098542 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

AvrRpt-cleavage

Protein Analysis

240

Amino Acids

26.4

Weight (kDa)

9.58

Isoelectric Point (pI)

66.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AvrRpt-cleavage	PF05627	3 - 32	7.8e-10	Cleavage site for pathogenic type III effector avirulence factor Avr
AvrRpt-cleavage	PF05627	171 - 204	8.3e-21	Cleavage site for pathogenic type III effector avirulence factor Avr

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25070 AT3G25070
fragaria_vesca	FvH4_2g18650 FvH4_2g18650 FvH4_2g18650
malus_domestica	MD05G1172400.v1.1 MD10G1160600.v1.1
prunus_persica	Prupe.8G199800_v2.0.a1
pyrus_communis	pycom05g15900 pycom10g13880
rosa_chinensis	RchiOBHm_Chr6g0284211
rosa_laevigata	RLG00000012756
rosa_multiflora	Rmu_sc0002698.1_g000030
rosa_roxburghii	Rroxscaffold_7G00184780
rosa_rugosa	Rorug06G0161900
rosa_samantha	Rh6AG274800 Rh6BG275300 Rh6CG277000 Rh6DG269700
rosa_wichuraiana	Rw6G023640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	29, 359
AciI	CCGC	3 cut(s)	484, 601, 614
AclI	AACGTT	2 cut(s)	10, 382
AclWI	GGATC	1 cut(s)	474
AcsI	RAATTY	1 cut(s)	533
AcyI	GRCGYC	1 cut(s)	446
AfaI	GTAC	1 cut(s)	21
AfiI	CCNNNNNNNGG	6 cut(s)	29, 200, 305, 359, 515, 536
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	2 cut(s)	380, 592
AjnI	CCWGG	3 cut(s)	199, 431, 625
AjuI	GAANNNNNNNTTGG	2 cut(s)	39, 71
AloI	GAACNNNNNNTCC	4 cut(s)	195, 227, 655, 687
AluBI	AGCT	2 cut(s)	344, 569
AluI	AGCT	2 cut(s)	344, 569
Alw26I	GTCTC	1 cut(s)	415
AlwI	GGATC	1 cut(s)	474
AoxI	GGCC	2 cut(s)	81, 307
ApeKI	GCWGC	3 cut(s)	344, 521, 696
ApoI	RAATTY	1 cut(s)	533
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
AseI	ATTAAT	1 cut(s)	120
Asp700I	GAANNNNTTC	2 cut(s)	54, 421
AspLEI	GCGC	1 cut(s)	276
AspS9I	GGNCC	1 cut(s)	82
AsuC2I	CCSGG	1 cut(s)	560
AsuHPI	GGTGA	4 cut(s)	299, 338, 378, 417
BauI	CACGAG	1 cut(s)	495
BbsI	GAAGAC	1 cut(s)	48
BbvI	GCAGC	3 cut(s)	331, 508, 683
BccI	CCATC	3 cut(s)	342, 402, 566
BceAI	ACGGC	1 cut(s)	294
BciT130I	CCWGG	3 cut(s)	201, 433, 627
BcnI	CCSGG	1 cut(s)	560
BcoDI	GTCTC	1 cut(s)	415
BisI	GCNGC	3 cut(s)	345, 522, 697
BlsI	GCNGC	3 cut(s)	346, 523, 698
Bme1390I	CCNGG	4 cut(s)	201, 433, 560, 627
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	2 cut(s)	198, 673
BmrFI	CCNGG	4 cut(s)	201, 433, 560, 627
BmsI	GCATC	3 cut(s)	179, 572, 646
BpiI	GAAGAC	1 cut(s)	48
BpuMI	CCSGG	1 cut(s)	560
BsaHI	GRCGYC	1 cut(s)	446
BsaI	GGTCTC	1 cut(s)	415
BsaJI	CCNNGG	5 cut(s)	310, 432, 463, 626, 704
BsaWI	WCCGGW	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	6 cut(s)	29, 200, 305, 359, 515, 536
Bse1I	ACTGG	2 cut(s)	103, 209
Bse3DI	GCAATG	1 cut(s)	406
BseBI	CCWGG	3 cut(s)	201, 433, 627
BseDI	CCNNGG	5 cut(s)	310, 432, 463, 626, 704
BseGI	GGATG	3 cut(s)	150, 553, 640
BseLI	CCNNNNNNNGG	6 cut(s)	29, 200, 305, 359, 515, 536
BseMI	GCAATG	1 cut(s)	406
BseMII	CTCAG	4 cut(s)	239, 357, 426, 501
BseNI	ACTGG	2 cut(s)	103, 209
BseRI	GAGGAG	2 cut(s)	168, 620
BseXI	GCAGC	3 cut(s)	331, 508, 683
BseYI	CCCAGC	3 cut(s)	265, 270, 359
BsgI	GTGCAG	1 cut(s)	330
BshFI	GGCC	2 cut(s)	83, 309
BsiSI	CCGG	2 cut(s)	194, 560
BslFI	GGGAC	1 cut(s)	643
BslI	CCNNNNNNNGG	6 cut(s)	29, 200, 305, 359, 515, 536
BsmAI	GTCTC	1 cut(s)	415
BsmFI	GGGAC	1 cut(s)	643
BsnI	GGCC	2 cut(s)	83, 309
Bso31I	GGTCTC	1 cut(s)	415
Bsp143I	GATC	1 cut(s)	479
Bsp19I	CCATGG	2 cut(s)	463, 704
BspACI	CCGC	3 cut(s)	484, 601, 614
BspANI	GGCC	2 cut(s)	83, 309
BspCNI	CTCAG	4 cut(s)	240, 358, 425, 502
BspHI	TCATGA	1 cut(s)	214
BspLI	GGNNCC	2 cut(s)	198, 673
BspPI	GGATC	1 cut(s)	474
BspQI	GCTCTTC	1 cut(s)	334
BspTNI	GGTCTC	1 cut(s)	415
BsrDI	GCAATG	1 cut(s)	406
BsrI	ACTGG	2 cut(s)	103, 209
BssECI	CCNNGG	5 cut(s)	310, 432, 463, 626, 704
BssMI	GATC	1 cut(s)	479
BssNI	GRCGYC	1 cut(s)	446
BssSI	CACGAG	1 cut(s)	495
BssT1I	CCWWGG	2 cut(s)	463, 704
Bst2BI	CACGAG	1 cut(s)	495
Bst2UI	CCWGG	3 cut(s)	201, 433, 627
Bst4CI	ACNGT	2 cut(s)	374, 683
Bst6I	CTCTTC	3 cut(s)	132, 334, 412
BstACI	GRCGYC	1 cut(s)	446
BstDEI	CTNAG	4 cut(s)	248, 366, 412, 510
BstDSI	CCRYGG	3 cut(s)	310, 463, 704
BstENI	CCTNNNNNAGG	2 cut(s)	303, 513
BstF5I	GGATG	3 cut(s)	150, 553, 640
BstHHI	GCGC	1 cut(s)	276
BstKTI	GATC	1 cut(s)	482
BstMAI	GTCTC	1 cut(s)	415
BstMBI	GATC	1 cut(s)	479
BstMWI	GCNNNNNNNGC	1 cut(s)	620
BstNI	CCWGG	3 cut(s)	201, 433, 627
BstNSI	RCATGY	1 cut(s)	20
BstSCI	CCNGG	4 cut(s)	199, 431, 558, 625
BstV1I	GCAGC	3 cut(s)	331, 508, 683
BstV2I	GAAGAC	1 cut(s)	48
BstX2I	RGATCY	1 cut(s)	479
BstYI	RGATCY	1 cut(s)	479
BsuRI	GGCC	2 cut(s)	83, 309
BtgI	CCRYGG	3 cut(s)	310, 463, 704
BtgZI	GCGATG	1 cut(s)	380
BtsCI	GGATG	3 cut(s)	150, 553, 640
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	3 cut(s)	63, 379, 688
CciI	TCATGA	1 cut(s)	214
CfoI	GCGC	1 cut(s)	276
Cfr13I	GGNCC	1 cut(s)	82
CseI	GACGC	1 cut(s)	435
Csp6I	GTAC	1 cut(s)	20
CviAII	CATG	4 cut(s)	17, 215, 464, 705
CviJI	RGCY	6 cut(s)	83, 269, 309, 344, 462, 569
CviKI_1	RGCY	6 cut(s)	83, 269, 309, 344, 462, 569
CviQI	GTAC	1 cut(s)	20
DdeI	CTNAG	4 cut(s)	248, 366, 412, 510
DpnI	GATC	1 cut(s)	481
DpnII	GATC	1 cut(s)	479
Eam1104I	CTCTTC	3 cut(s)	132, 334, 412
EarI	CTCTTC	3 cut(s)	132, 334, 412
Eco130I	CCWWGG	2 cut(s)	463, 704
Eco31I	GGTCTC	1 cut(s)	415
EcoNI	CCTNNNNNAGG	2 cut(s)	303, 513
EcoRII	CCWGG	3 cut(s)	199, 431, 625
EcoT14I	CCWWGG	2 cut(s)	463, 704
ErhI	CCWWGG	2 cut(s)	463, 704
FaeI	CATG	4 cut(s)	20, 218, 467, 708
FaiI	YATR	8 cut(s)	18, 216, 451, 453, 465, 585, 587, 706
FalI	AAGNNNNNCTT	2 cut(s)	43, 75
FaqI	GGGAC	1 cut(s)	643
FatI	CATG	4 cut(s)	16, 214, 463, 704
FauI	CCCGC	3 cut(s)	491, 594, 607
FauNDI	CATATG	1 cut(s)	451
Fnu4HI	GCNGC	3 cut(s)	345, 522, 697
FokI	GGATG	3 cut(s)	137, 560, 627
Fsp4HI	GCNGC	3 cut(s)	345, 522, 697
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	3 cut(s)	345, 522, 697
GsaI	CCCAGC	3 cut(s)	269, 274, 363
HaeIII	GGCC	2 cut(s)	83, 309
HapII	CCGG	2 cut(s)	194, 560
HgaI	GACGC	1 cut(s)	435
HhaI	GCGC	1 cut(s)	276
Hin1I	GRCGYC	1 cut(s)	446
Hin1II	CATG	4 cut(s)	20, 218, 467, 708
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HinfI	GANTC	3 cut(s)	142, 422, 631
HpaII	CCGG	2 cut(s)	194, 560
HphI	GGTGA	4 cut(s)	299, 338, 378, 417
Hpy166II	GTNNAC	3 cut(s)	14, 290, 386
Hpy188I	TCNGA	2 cut(s)	160, 367
Hpy188III	TCNNGA	5 cut(s)	146, 215, 414, 497, 509
Hpy8I	GTNNAC	3 cut(s)	14, 290, 386
HpyAV	CCTTC	3 cut(s)	431, 604, 645
HpyCH4III	ACNGT	2 cut(s)	374, 683
HpyCH4IV	ACGT	2 cut(s)	10, 382
HpyCH4V	TGCA	5 cut(s)	170, 347, 404, 476, 659
HpyF10VI	GCNNNNNNNGC	1 cut(s)	620
HpyF3I	CTNAG	4 cut(s)	248, 366, 412, 510
HpySE526I	ACGT	2 cut(s)	10, 382
Hsp92I	GRCGYC	1 cut(s)	446
Hsp92II	CATG	4 cut(s)	20, 218, 467, 708
HspAI	GCGC	1 cut(s)	274
Kzo9I	GATC	1 cut(s)	479
LguI	GCTCTTC	1 cut(s)	334
Lsp1109I	GCAGC	3 cut(s)	331, 508, 683
LweI	GCATC	3 cut(s)	179, 572, 646
MaeII	ACGT	2 cut(s)	10, 382
MalI	GATC	1 cut(s)	481
MboI	GATC	1 cut(s)	479
MboII	GAAGA	5 cut(s)	53, 149, 237, 351, 429
MfeI	CAATTG	1 cut(s)	34
MflI	RGATCY	1 cut(s)	479
MluCI	AATT	2 cut(s)	34, 533
MlyI	GAGTC	1 cut(s)	625
MnlI	CCTC	9 cut(s)	164, 189, 229, 299, 399, 439, 497, 504, 598
MroXI	GAANNNNTTC	2 cut(s)	54, 421
MseI	TTAA	1 cut(s)	120
MslI	CAYNNNNRTG	1 cut(s)	399
MspA1I	CMGCKG	1 cut(s)	569
MspI	CCGG	2 cut(s)	194, 560
MspR9I	CCNGG	4 cut(s)	201, 433, 560, 627
MunI	CAATTG	1 cut(s)	34
MvaI	CCWGG	3 cut(s)	201, 433, 627
MwoI	GCNNNNNNNGC	1 cut(s)	620
NciI	CCSGG	1 cut(s)	560
NcoI	CCATGG	2 cut(s)	463, 704
NdeI	CATATG	1 cut(s)	451
NdeII	GATC	1 cut(s)	479
NlaIII	CATG	4 cut(s)	20, 218, 467, 708
NlaIV	GGNNCC	2 cut(s)	198, 673
NspI	RCATGY	1 cut(s)	20
PagI	TCATGA	1 cut(s)	214
PciI	ACATGT	1 cut(s)	16
PciSI	GCTCTTC	1 cut(s)	334
PdmI	GAANNNNTTC	2 cut(s)	54, 421
PfeI	GAWTC	2 cut(s)	142, 422
PflMI	CCANNNNNTGG	2 cut(s)	29, 359
PkrI	GCNGC	3 cut(s)	346, 523, 698
PleI	GAGTC	1 cut(s)	625
PpsI	GAGTC	1 cut(s)	625
PscI	ACATGT	1 cut(s)	16
PshBI	ATTAAT	1 cut(s)	120
Psp1406I	AACGTT	2 cut(s)	10, 382
Psp6I	CCWGG	3 cut(s)	199, 431, 625
PspFI	CCCAGC	3 cut(s)	265, 270, 359
PspGI	CCWGG	3 cut(s)	199, 431, 625
PspN4I	GGNNCC	2 cut(s)	198, 673
PspPI	GGNCC	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	479
PvuII	CAGCTG	1 cut(s)	569
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
RseI	CAYNNNNRTG	1 cut(s)	399
SapI	GCTCTTC	1 cut(s)	334
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	3 cut(s)	345, 522, 697
Sau3AI	GATC	1 cut(s)	479
Sau96I	GGNCC	1 cut(s)	82
SchI	GAGTC	1 cut(s)	625
ScrFI	CCNGG	4 cut(s)	201, 433, 560, 627
SetI	ASST	9 cut(s)	13, 249, 301, 346, 385, 391, 496, 520, 571
SfaNI	GCATC	3 cut(s)	179, 572, 646
SmiMI	CAYNNNNRTG	1 cut(s)	399
Sse9I	AATT	2 cut(s)	34, 533
SsiI	CCGC	3 cut(s)	484, 601, 614
StyD4I	CCNGG	4 cut(s)	199, 431, 558, 625
StyI	CCWWGG	2 cut(s)	463, 704
TaaI	ACNGT	2 cut(s)	374, 683
TaiI	ACGT	2 cut(s)	13, 385
TaqI	TCGA	2 cut(s)	94, 337
TasI	AATT	2 cut(s)	34, 533
TfiI	GAWTC	2 cut(s)	142, 422
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	3 cut(s)	70, 379, 688
TseI	GCWGC	3 cut(s)	344, 521, 696
TspDTI	ATGAA	4 cut(s)	203, 231, 468, 516
TspGWI	ACGGA	2 cut(s)	235, 633
TspRI	CASTG	3 cut(s)	70, 379, 688
Van91I	CCANNNNNTGG	2 cut(s)	29, 359
VspI	ATTAAT	1 cut(s)	120
XagI	CCTNNNNNAGG	2 cut(s)	303, 513
XapI	RAATTY	1 cut(s)	533
XceI	RCATGY	1 cut(s)	20
XmnI	GAANNNNTTC	2 cut(s)	54, 421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.