Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0011491

Physical Location & Seq

Genomic Coordinates Reverse (-)

30097580 .. 30101429

Gene Structure 3850 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1172400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCACAACGTTCACATGTACCAAAGTTTGGCAATTGGGAAGGCGAAGAAAGTGTTCCTTACACAGCCTATTTTGATAAGGCCCGTAAGGATCGAACTGGTGTCGGGGGAAAGATGATTAATCCAAATGACCCCCAAGAGAACCCGGACATCCTTTCTGACATATCTGCATCTTCTCCTCCAAAAGTTAGACCAGAACCAGAAAAACCAGTTCATGAACAGAGAAGAAGCAGGGAGGATAATGACCTAAGATTTGCCAACTCCCCAGCCCAGCGCAGAAATTCTGGTGAATCAGCACATCAACCTAGCAGAGGCCGTGGAGTTAGTTCTGGTGAAACCCATCGAAGGCCTGCACGGCCAAGTGCTGGGTCTGAGAACAGTGTTGAGCGTTCACCTCTCCATCGCAATGCGAGGGTCACAGGACGAGATTCACCCTCCTGGGAAGGAAAGGCTTCATATGAAACTAGCCATGGCACTCCTGGAAGGTCCCGCCTCAAACCTCGTGATGAAAGTCCTGAGAAAGGTGCTGCTGTTCCGAAATTTGGCGAGTGGGATGAAAACGACCCGGCATCAGCTGATGGTTTCACTCACATATTCAACAAAGTGCGGGAGGAGCGGGCGGGAAAAGTACCAGGGACTCCTTCTCAGCCGTCTTACCAGGATGCAAGAAGGCAGGGTTCCAATGACAGTGCCAAGAGTTGCTGCTTTCCATGGAGCAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002237 GO:0002253 GO:0002376 GO:0002682 GO:0002683 GO:0002684 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010204 GO:0010363 GO:0010941 GO:0012501 GO:0016020 GO:0016310 GO:0019538 GO:0019897 GO:0019898 GO:0023052 GO:0031347 GO:0031348 GO:0031349 GO:0033554 GO:0034050 GO:0034051 GO:0036211 GO:0042221 GO:0042742 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0045824 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050777 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0080135 GO:0098542 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

AvrRpt-cleavage

Protein Analysis

242

Amino Acids

26.74

Weight (kDa)

9.51

Isoelectric Point (pI)

69.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AvrRpt-cleavage	PF05627	3 - 32	1.5e-09	Cleavage site for pathogenic type III effector avirulence factor Avr
AvrRpt-cleavage	PF05627	173 - 206	8.4e-21	Cleavage site for pathogenic type III effector avirulence factor Avr

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25070 AT3G25070
fragaria_vesca	FvH4_2g18650 FvH4_2g18650 FvH4_2g18650
malus_domestica	MD05G1172400.v1.1 MD10G1160600.v1.1
prunus_persica	Prupe.8G199800_v2.0.a1
pyrus_communis	pycom05g15900 pycom10g13880
rosa_chinensis	RchiOBHm_Chr6g0284211
rosa_laevigata	RLG00000012756
rosa_multiflora	Rmu_sc0002698.1_g000030
rosa_roxburghii	Rroxscaffold_7G00184780
rosa_rugosa	Rorug06G0161900
rosa_samantha	Rh6AG274800 Rh6BG275300 Rh6CG277000 Rh6DG269700
rosa_wichuraiana	Rw6G023640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	29, 365
AccBSI	CCGCTC	1 cut(s)	616
AciI	CCGC	4 cut(s)	490, 607, 616, 620
AclI	AACGTT	1 cut(s)	10
AclWI	GGATC	1 cut(s)	99
AcoI	YGGCCR	1 cut(s)	356
AcsI	RAATTY	2 cut(s)	280, 539
AfaI	GTAC	2 cut(s)	21, 630
AfiI	CCNNNNNNNGG	6 cut(s)	29, 311, 345, 365, 521, 542
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	1 cut(s)	598
AjnI	CCWGG	4 cut(s)	437, 478, 631, 657
AluBI	AGCT	1 cut(s)	575
AluI	AGCT	1 cut(s)	575
AlwI	GGATC	1 cut(s)	99
AoxI	GGCC	4 cut(s)	81, 313, 347, 356
ApeKI	GCWGC	2 cut(s)	527, 702
ApoI	RAATTY	2 cut(s)	280, 539
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
AseI	ATTAAT	1 cut(s)	120
Asp700I	GAANNNNTTC	2 cut(s)	54, 451
AspLEI	GCGC	1 cut(s)	276
AspS9I	GGNCC	2 cut(s)	82, 486
AsuC2I	CCSGG	2 cut(s)	146, 566
AsuHPI	GGTGA	4 cut(s)	299, 344, 384, 423
AvaII	GGWCC	1 cut(s)	486
BauI	CACGAG	1 cut(s)	501
BbvI	GCAGC	2 cut(s)	514, 689
BccI	CCATC	3 cut(s)	348, 408, 572
BceAI	ACGGC	3 cut(s)	300, 371, 634
BciT130I	CCWGG	4 cut(s)	439, 480, 633, 659
BcnI	CCSGG	2 cut(s)	146, 566
BfaI	CTAG	2 cut(s)	306, 465
BglI	GCCNNNNNGGC	1 cut(s)	355
BisI	GCNGC	2 cut(s)	528, 703
BlsI	GCNGC	2 cut(s)	529, 704
Bme1390I	CCNGG	6 cut(s)	146, 439, 480, 566, 633, 659
Bme18I	GGWCC	1 cut(s)	486
BmgT120I	GGNCC	2 cut(s)	82, 486
BmiI	GGNNCC	2 cut(s)	488, 679
BmrFI	CCNGG	6 cut(s)	146, 439, 480, 566, 633, 659
BmsI	GCATC	3 cut(s)	179, 578, 652
BpuMI	CCSGG	2 cut(s)	146, 566
BsaJI	CCNNGG	5 cut(s)	316, 438, 469, 632, 710
Bsc4I	CCNNNNNNNGG	6 cut(s)	29, 311, 345, 365, 521, 542
Bse1I	ACTGG	2 cut(s)	103, 209
Bse3DI	GCAATG	1 cut(s)	412
BseBI	CCWGG	4 cut(s)	439, 480, 633, 659
BseDI	CCNNGG	5 cut(s)	316, 438, 469, 632, 710
BseGI	GGATG	3 cut(s)	150, 559, 667
BseLI	CCNNNNNNNGG	6 cut(s)	29, 311, 345, 365, 521, 542
BseMI	GCAATG	1 cut(s)	412
BseMII	CTCAG	3 cut(s)	363, 507, 659
BseNI	ACTGG	2 cut(s)	103, 209
BseRI	GAGGAG	2 cut(s)	168, 626
BseXI	GCAGC	2 cut(s)	514, 689
BseYI	CCCAGC	3 cut(s)	265, 270, 365
BsgI	GTGCAG	1 cut(s)	336
BshFI	GGCC	4 cut(s)	83, 315, 349, 358
BsiSI	CCGG	2 cut(s)	146, 566
BslFI	GGGAC	2 cut(s)	472, 649
BslI	CCNNNNNNNGG	6 cut(s)	29, 311, 345, 365, 521, 542
BsmFI	GGGAC	2 cut(s)	472, 649
BsnI	GGCC	4 cut(s)	83, 315, 349, 358
Bsp143I	GATC	1 cut(s)	91
Bsp19I	CCATGG	2 cut(s)	469, 710
BspACI	CCGC	4 cut(s)	490, 607, 616, 620
BspANI	GGCC	4 cut(s)	83, 315, 349, 358
BspCNI	CTCAG	3 cut(s)	364, 508, 658
BspHI	TCATGA	1 cut(s)	214
BspLI	GGNNCC	2 cut(s)	488, 679
BspPI	GGATC	1 cut(s)	99
BsrBI	CCGCTC	1 cut(s)	616
BsrDI	GCAATG	1 cut(s)	412
BsrI	ACTGG	2 cut(s)	103, 209
BssECI	CCNNGG	5 cut(s)	316, 438, 469, 632, 710
BssMI	GATC	1 cut(s)	91
BssSI	CACGAG	1 cut(s)	501
BssT1I	CCWWGG	2 cut(s)	469, 710
Bst2BI	CACGAG	1 cut(s)	501
Bst2UI	CCWGG	4 cut(s)	439, 480, 633, 659
Bst4CI	ACNGT	2 cut(s)	380, 689
BstC8I	GCNNGC	2 cut(s)	351, 618
BstDEI	CTNAG	4 cut(s)	248, 372, 516, 645
BstDSI	CCRYGG	3 cut(s)	316, 469, 710
BstENI	CCTNNNNNAGG	2 cut(s)	309, 519
BstF5I	GGATG	3 cut(s)	150, 559, 667
BstHHI	GCGC	1 cut(s)	276
BstKTI	GATC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	2 cut(s)	355, 613
BstNI	CCWGG	4 cut(s)	439, 480, 633, 659
BstNSI	RCATGY	1 cut(s)	20
BstSCI	CCNGG	6 cut(s)	144, 437, 478, 564, 631, 657
BstV1I	GCAGC	2 cut(s)	514, 689
BsuRI	GGCC	4 cut(s)	83, 315, 349, 358
BtgI	CCRYGG	3 cut(s)	316, 469, 710
BtgZI	GCGATG	1 cut(s)	386
BtsCI	GGATG	3 cut(s)	150, 559, 667
BtsIMutI	CAGTG	2 cut(s)	385, 694
Cac8I	GCNNGC	2 cut(s)	351, 618
CciI	TCATGA	1 cut(s)	214
CfoI	GCGC	1 cut(s)	276
Cfr13I	GGNCC	2 cut(s)	82, 486
Csp6I	GTAC	2 cut(s)	20, 629
CviAII	CATG	4 cut(s)	17, 215, 470, 711
CviQI	GTAC	2 cut(s)	20, 629
DdeI	CTNAG	4 cut(s)	248, 372, 516, 645
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
EaeI	YGGCCR	1 cut(s)	356
Eco130I	CCWWGG	2 cut(s)	469, 710
Eco147I	AGGCCT	1 cut(s)	349
Eco47I	GGWCC	1 cut(s)	486
EcoNI	CCTNNNNNAGG	2 cut(s)	309, 519
EcoO109I	RGGNCCY	1 cut(s)	486
EcoRII	CCWGG	4 cut(s)	437, 478, 631, 657
EcoT14I	CCWWGG	2 cut(s)	469, 710
ErhI	CCWWGG	2 cut(s)	469, 710
FaeI	CATG	4 cut(s)	20, 218, 473, 714
FaiI	YATR	8 cut(s)	18, 164, 216, 457, 459, 471, 593, 712
FalI	AAGNNNNNCTT	2 cut(s)	43, 75
FaqI	GGGAC	2 cut(s)	472, 649
FatI	CATG	4 cut(s)	16, 214, 469, 710
FauI	CCCGC	4 cut(s)	497, 600, 609, 613
FauNDI	CATATG	1 cut(s)	457
Fnu4HI	GCNGC	2 cut(s)	528, 703
FokI	GGATG	3 cut(s)	137, 566, 674
Fsp4HI	GCNGC	2 cut(s)	528, 703
FspBI	CTAG	2 cut(s)	306, 465
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	2 cut(s)	528, 703
GsaI	CCCAGC	3 cut(s)	269, 274, 369
HaeIII	GGCC	4 cut(s)	83, 315, 349, 358
HapII	CCGG	2 cut(s)	146, 566
HhaI	GCGC	1 cut(s)	276
Hin1II	CATG	4 cut(s)	20, 218, 473, 714
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HinfI	GANTC	3 cut(s)	290, 428, 637
HpaII	CCGG	2 cut(s)	146, 566
HphI	GGTGA	4 cut(s)	299, 344, 384, 423
Hpy166II	GTNNAC	2 cut(s)	14, 392
Hpy188I	TCNGA	3 cut(s)	160, 373, 537
Hpy188III	TCNNGA	3 cut(s)	215, 503, 515
Hpy8I	GTNNAC	2 cut(s)	14, 392
HpyAV	CCTTC	6 cut(s)	35, 339, 437, 477, 651, 663
HpyCH4III	ACNGT	2 cut(s)	380, 689
HpyCH4IV	ACGT	1 cut(s)	10
HpyCH4V	TGCA	3 cut(s)	170, 353, 665
HpyF10VI	GCNNNNNNNGC	2 cut(s)	355, 613
HpyF3I	CTNAG	4 cut(s)	248, 372, 516, 645
HpySE526I	ACGT	1 cut(s)	10
Hsp92II	CATG	4 cut(s)	20, 218, 473, 714
HspAI	GCGC	1 cut(s)	274
Kzo9I	GATC	1 cut(s)	91
LmnI	GCTCC	2 cut(s)	613, 714
Lsp1109I	GCAGC	2 cut(s)	514, 689
LweI	GCATC	3 cut(s)	179, 578, 652
MaeI	CTAG	2 cut(s)	306, 465
MaeII	ACGT	1 cut(s)	10
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	1 cut(s)	93
MbiI	CCGCTC	1 cut(s)	616
MboI	GATC	1 cut(s)	91
MboII	GAAGA	3 cut(s)	59, 165, 237
MfeI	CAATTG	1 cut(s)	34
MluCI	AATT	3 cut(s)	34, 280, 539
MlyI	GAGTC	1 cut(s)	631
MnlI	CCTC	9 cut(s)	189, 229, 305, 405, 405, 445, 503, 510, 604
MroXI	GAANNNNTTC	2 cut(s)	54, 451
MseI	TTAA	1 cut(s)	120
MslI	CAYNNNNRTG	1 cut(s)	405
MspA1I	CMGCKG	1 cut(s)	575
MspI	CCGG	2 cut(s)	146, 566
MspR9I	CCNGG	6 cut(s)	146, 439, 480, 566, 633, 659
MunI	CAATTG	1 cut(s)	34
MvaI	CCWGG	4 cut(s)	439, 480, 633, 659
MwoI	GCNNNNNNNGC	2 cut(s)	355, 613
NciI	CCSGG	2 cut(s)	146, 566
NcoI	CCATGG	2 cut(s)	469, 710
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	4 cut(s)	20, 218, 473, 714
NlaIV	GGNNCC	2 cut(s)	488, 679
NmuCI	GTSAC	1 cut(s)	415
NspI	RCATGY	1 cut(s)	20
PagI	TCATGA	1 cut(s)	214
PceI	AGGCCT	1 cut(s)	349
PciI	ACATGT	1 cut(s)	16
PdmI	GAANNNNTTC	2 cut(s)	54, 451
PfeI	GAWTC	2 cut(s)	290, 428
PflMI	CCANNNNNTGG	2 cut(s)	29, 365
PfoI	TCCNGGA	1 cut(s)	478
PkrI	GCNGC	2 cut(s)	529, 704
PleI	GAGTC	1 cut(s)	631
PpsI	GAGTC	1 cut(s)	631
PpuMI	RGGWCCY	1 cut(s)	486
PscI	ACATGT	1 cut(s)	16
PshBI	ATTAAT	1 cut(s)	120
Psp1406I	AACGTT	1 cut(s)	10
Psp5II	RGGWCCY	1 cut(s)	486
Psp6I	CCWGG	4 cut(s)	437, 478, 631, 657
PspFI	CCCAGC	3 cut(s)	265, 270, 365
PspGI	CCWGG	4 cut(s)	437, 478, 631, 657
PspN4I	GGNNCC	2 cut(s)	488, 679
PspPI	GGNCC	2 cut(s)	82, 486
PspPPI	RGGWCCY	1 cut(s)	486
PvuII	CAGCTG	1 cut(s)	575
RsaI	GTAC	2 cut(s)	21, 630
RsaNI	GTAC	2 cut(s)	20, 629
RseI	CAYNNNNRTG	1 cut(s)	405
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	2 cut(s)	528, 703
Sau3AI	GATC	1 cut(s)	91
Sau96I	GGNCC	2 cut(s)	82, 486
SchI	GAGTC	1 cut(s)	631
ScrFI	CCNGG	6 cut(s)	146, 439, 480, 566, 633, 659
SetI	ASST	8 cut(s)	13, 249, 307, 397, 488, 502, 526, 577
SfaNI	GCATC	3 cut(s)	179, 578, 652
SfiI	GGCCNNNNNGGCC	1 cut(s)	355
SinI	GGWCC	1 cut(s)	486
SmiMI	CAYNNNNRTG	1 cut(s)	405
Sse9I	AATT	3 cut(s)	34, 280, 539
SseBI	AGGCCT	1 cut(s)	349
SsiI	CCGC	4 cut(s)	490, 607, 616, 620
SspMI	CTAG	2 cut(s)	306, 465
StuI	AGGCCT	1 cut(s)	349
StyD4I	CCNGG	6 cut(s)	144, 437, 478, 564, 631, 657
StyI	CCWWGG	2 cut(s)	469, 710
TaaI	ACNGT	2 cut(s)	380, 689
TaiI	ACGT	1 cut(s)	13
TaqI	TCGA	2 cut(s)	94, 343
TasI	AATT	3 cut(s)	34, 280, 539
TfiI	GAWTC	2 cut(s)	290, 428
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	2 cut(s)	385, 694
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	2 cut(s)	527, 702
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	6 cut(s)	203, 231, 444, 474, 522, 570
TspRI	CASTG	2 cut(s)	385, 694
Van91I	CCANNNNNTGG	2 cut(s)	29, 365
VpaK11BI	GGWCC	1 cut(s)	486
VspI	ATTAAT	1 cut(s)	120
XagI	CCTNNNNNAGG	2 cut(s)	309, 519
XapI	RAATTY	2 cut(s)	280, 539
XceI	RCATGY	1 cut(s)	20
XcmI	CCANNNNNNNNNTGG	1 cut(s)	476
XmnI	GAANNNNTTC	2 cut(s)	54, 451
XspI	CTAG	2 cut(s)	306, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.