Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011491

Physical Location & Seq

Genomic Coordinates Reverse (-)

23140963 .. 23144084

Gene Structure 3122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0161900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGGCCTGCACATTCTGAGGTCTTCTTCACCCCTTTCTTCTTCTTCCAAGACCATAATCTTCAACCCCACGACCAAACCTACTCTAACAAACCTCCTCCTCCTCCGACCTTCAAACCCTACACCCACTACTTCTCTCTTCAAAACCCATTTCACAACTTTCTCACCAAAACCCATCACACCCGCCATTGGGTTTGGCGGGTCTTTGCAAAACGCTAAGCGTAGCTTCCGTGGTGGAGTTGTTGTAGCTATGGCTGCACCTGGTCCGGTTCAGAAATCAGAGGAGGAGTGGAGAGCTGTCCTCTCTCCAGAGCAGTTTCGGATTCTGAGGCAAAAAGGCACCGAGTATCCTGGCACCGGAGTATATGACAAGTTCTTTGAGGAGGGAGTCTATACCTGTGGAGGATGTGGGACTCCTCTCTACAAGTCAACAACCAAATTTAACTCTGGTTGTGGTTGGCCAGCTTTCTACGAGGGTCTTCCTGGGGCCATAAATTCTGTTCCGGACCGCGATGGGATGAGGGTTGAAATTACATGTGCGGCTTGTGGTGGACACCTGGGTCATGTATTCAAAGGTGAAGGTTTCCGGACACCCACAGATGAACGCCATTGTGTGAACAGTATTTCACTCAAGTTTAGTCCTGCCAATTCTAATCCGTCCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002237 GO:0002253 GO:0002376 GO:0002682 GO:0002683 GO:0002684 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010204 GO:0010363 GO:0010941 GO:0012501 GO:0016020 GO:0016310 GO:0019538 GO:0019897 GO:0019898 GO:0023052 GO:0031347 GO:0031348 GO:0031349 GO:0033554 GO:0034050 GO:0034051 GO:0036211 GO:0042221 GO:0042742 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0045824 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050777 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0080135 GO:0098542 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

AvrRpt-cleavage

Protein Analysis

221

Amino Acids

23.82

Weight (kDa)

9.2

Isoelectric Point (pI)

53.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SelR	PF01641	101 - 214	1.9e-43	SelR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25070 AT3G25070
fragaria_vesca	FvH4_2g18650 FvH4_2g18650 FvH4_2g18650
malus_domestica	MD05G1172400.v1.1 MD10G1160600.v1.1
prunus_persica	Prupe.8G199800_v2.0.a1
pyrus_communis	pycom05g15900 pycom10g13880
rosa_chinensis	RchiOBHm_Chr6g0284211
rosa_laevigata	RLG00000012756
rosa_multiflora	Rmu_sc0002698.1_g000030
rosa_roxburghii	Rroxscaffold_7G00184780
rosa_rugosa	Rorug06G0161900
rosa_samantha	Rh6AG274800 Rh6BG275300 Rh6CG277000 Rh6DG269700
rosa_wichuraiana	Rw6G023640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	558
AccB1I	GGYRCC	2 cut(s)	338, 353
AccII	CGCG	1 cut(s)	510
AccIII	TCCGGA	2 cut(s)	502, 585
AciI	CCGC	4 cut(s)	183, 198, 508, 539
AcoI	YGGCCR	1 cut(s)	458
AcsI	RAATTY	2 cut(s)	437, 493
AfiI	CCNNNNNNNGG	3 cut(s)	188, 189, 356
AflIII	ACRYGT	1 cut(s)	533
AgsI	TTSAA	5 cut(s)	64, 114, 142, 527, 571
AjnI	CCWGG	4 cut(s)	259, 349, 481, 555
AluBI	AGCT	4 cut(s)	225, 248, 296, 464
AluI	AGCT	4 cut(s)	225, 248, 296, 464
Aor13HI	TCCGGA	2 cut(s)	502, 585
AoxI	GGCC	3 cut(s)	4, 458, 486
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	2 cut(s)	437, 493
ArsI	GACNNNNNNTTYG	2 cut(s)	359, 391
AspS9I	GGNCC	4 cut(s)	4, 263, 486, 505
AsuHPI	GGTGA	3 cut(s)	21, 156, 587
AvaII	GGWCC	2 cut(s)	263, 505
BalI	TGGCCA	1 cut(s)	460
BanI	GGYRCC	2 cut(s)	338, 353
BbsI	GAAGAC	2 cut(s)	15, 470
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	2 cut(s)	182, 506
BciT130I	CCWGG	4 cut(s)	261, 351, 483, 557
BciVI	GTATCC	1 cut(s)	357
BfuI	GTATCC	1 cut(s)	357
BisI	GCNGC	2 cut(s)	255, 540
BlpI	GCTNAGC	1 cut(s)	216
BlsI	GCNGC	2 cut(s)	256, 541
Bme1390I	CCNGG	4 cut(s)	261, 351, 483, 557
Bme18I	GGWCC	2 cut(s)	263, 505
BmgT120I	GGNCC	4 cut(s)	4, 263, 486, 505
BmiI	GGNNCC	3 cut(s)	340, 355, 487
BmrFI	CCNGG	4 cut(s)	261, 351, 483, 557
BpiI	GAAGAC	2 cut(s)	15, 470
BplI	GAGNNNNNCTC	2 cut(s)	285, 317
BpmI	CTGGAG	1 cut(s)	291
Bpu1102I	GCTNAGC	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	614
BsaJI	CCNNGG	3 cut(s)	229, 482, 556
BsaWI	WCCGGW	4 cut(s)	265, 356, 502, 585
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bsc4I	CCNNNNNNNGG	3 cut(s)	188, 189, 356
BseAI	TCCGGA	2 cut(s)	502, 585
BseBI	CCWGG	4 cut(s)	261, 351, 483, 557
BseDI	CCNNGG	3 cut(s)	229, 482, 556
BseGI	GGATG	2 cut(s)	410, 522
BseLI	CCNNNNNNNGG	3 cut(s)	188, 189, 356
BseMII	CTCAG	2 cut(s)	8, 317
BseRI	GAGGAG	7 cut(s)	86, 89, 92, 296, 299, 395, 405
BseXI	GCAGC	1 cut(s)	241
BsgI	GTGCAG	1 cut(s)	240
Bsh1236I	CGCG	1 cut(s)	510
BshFI	GGCC	3 cut(s)	6, 460, 488
BshNI	GGYRCC	2 cut(s)	338, 353
BsiSI	CCGG	4 cut(s)	266, 357, 503, 586
BslFI	GGGAC	1 cut(s)	424
BslI	CCNNNNNNNGG	3 cut(s)	188, 189, 356
BsmFI	GGGAC	1 cut(s)	424
BsnI	GGCC	3 cut(s)	6, 460, 488
Bsp13I	TCCGGA	2 cut(s)	502, 585
Bsp1720I	GCTNAGC	1 cut(s)	216
BspACI	CCGC	4 cut(s)	183, 198, 508, 539
BspANI	GGCC	3 cut(s)	6, 460, 488
BspCNI	CTCAG	2 cut(s)	9, 318
BspEI	TCCGGA	2 cut(s)	502, 585
BspFNI	CGCG	1 cut(s)	510
BspLI	GGNNCC	3 cut(s)	340, 355, 487
BspT107I	GGYRCC	2 cut(s)	338, 353
BssECI	CCNNGG	3 cut(s)	229, 482, 556
Bst2UI	CCWGG	4 cut(s)	261, 351, 483, 557
Bst4CI	ACNGT	1 cut(s)	620
Bst6I	CTCTTC	1 cut(s)	143
BstC8I	GCNNGC	2 cut(s)	8, 462
BstDEI	CTNAG	3 cut(s)	17, 216, 326
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	2 cut(s)	410, 522
BstFNI	CGCG	1 cut(s)	510
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	4 cut(s)	261, 351, 483, 557
BstNSI	RCATGY	1 cut(s)	537
BstSCI	CCNGG	4 cut(s)	259, 349, 481, 555
BstUI	CGCG	1 cut(s)	510
BstV1I	GCAGC	1 cut(s)	241
BstV2I	GAAGAC	2 cut(s)	15, 470
BsuI	GTATCC	1 cut(s)	357
BsuRI	GGCC	3 cut(s)	6, 460, 488
BtgI	CCRYGG	1 cut(s)	229
BtgZI	GCGATG	1 cut(s)	525
BtsCI	GGATG	2 cut(s)	410, 522
Cac8I	GCNNGC	2 cut(s)	8, 462
Cfr13I	GGNCC	4 cut(s)	4, 263, 486, 505
CpoI	CGGWCCG	1 cut(s)	505
CsiI	ACCWGGT	1 cut(s)	259
CspI	CGGWCCG	1 cut(s)	505
CviAII	CATG	2 cut(s)	534, 563
CviJI	RGCY	9 cut(s)	6, 225, 248, 254, 296, 460, 464, 488, 542
CviKI_1	RGCY	9 cut(s)	6, 225, 248, 254, 296, 460, 464, 488, 542
DdeI	CTNAG	3 cut(s)	17, 216, 326
DrdI	GACNNNNNNGTC	1 cut(s)	558
DseDI	GACNNNNNNGTC	1 cut(s)	558
EaeI	YGGCCR	1 cut(s)	458
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Eco47I	GGWCC	2 cut(s)	263, 505
EcoRII	CCWGG	4 cut(s)	259, 349, 481, 555
FaeI	CATG	2 cut(s)	537, 566
FaiI	YATR	8 cut(s)	56, 251, 364, 366, 393, 491, 535, 564
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FaqI	GGGAC	1 cut(s)	424
FatI	CATG	2 cut(s)	533, 562
FauI	CCCGC	2 cut(s)	190, 191
Fnu4HI	GCNGC	2 cut(s)	255, 540
FokI	GGATG	2 cut(s)	417, 529
Fsp4HI	GCNGC	2 cut(s)	255, 540
GluI	GCNGC	2 cut(s)	255, 540
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	3 cut(s)	6, 460, 488
HapII	CCGG	4 cut(s)	266, 357, 503, 586
Hin1II	CATG	2 cut(s)	537, 566
HincII	GTYRAC	1 cut(s)	429
HindII	GTYRAC	1 cut(s)	429
HinfI	GANTC	3 cut(s)	322, 387, 412
HpaII	CCGG	4 cut(s)	266, 357, 503, 586
HphI	GGTGA	3 cut(s)	21, 156, 587
Hpy166II	GTNNAC	3 cut(s)	429, 551, 616
Hpy188I	TCNGA	7 cut(s)	18, 107, 273, 280, 321, 327, 661
Hpy188III	TCNNGA	3 cut(s)	308, 503, 586
Hpy8I	GTNNAC	3 cut(s)	429, 551, 616
HpyAV	CCTTC	2 cut(s)	120, 572
HpyCH4III	ACNGT	1 cut(s)	620
HpyCH4V	TGCA	3 cut(s)	10, 208, 257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	3 cut(s)	17, 216, 326
Hsp92II	CATG	2 cut(s)	537, 566
Kpn2I	TCCGGA	2 cut(s)	502, 585
Lsp1109I	GCAGC	1 cut(s)	241
MabI	ACCWGGT	1 cut(s)	259
MboII	GAAGA	8 cut(s)	15, 18, 30, 33, 36, 52, 130, 470
MlsI	TGGCCA	1 cut(s)	460
MluCI	AATT	4 cut(s)	437, 493, 528, 646
MluNI	TGGCCA	1 cut(s)	460
MlyI	GAGTC	2 cut(s)	396, 406
MmeI	TCCRAC	1 cut(s)	130
Mox20I	TGGCCA	1 cut(s)	460
MroI	TCCGGA	2 cut(s)	502, 585
MscI	TGGCCA	1 cut(s)	460
MseI	TTAA	1 cut(s)	441
Msp20I	TGGCCA	1 cut(s)	460
MspI	CCGG	4 cut(s)	266, 357, 503, 586
MspR9I	CCNGG	4 cut(s)	261, 351, 483, 557
MvaI	CCWGG	4 cut(s)	261, 351, 483, 557
MvnI	CGCG	1 cut(s)	510
MwoI	GCNNNNNNNGC	1 cut(s)	254
NlaIII	CATG	2 cut(s)	537, 566
NlaIV	GGNNCC	3 cut(s)	340, 355, 487
NspI	RCATGY	1 cut(s)	537
PciI	ACATGT	1 cut(s)	533
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	2 cut(s)	256, 541
PleI	GAGTC	2 cut(s)	395, 406
PpsI	GAGTC	2 cut(s)	395, 406
PscI	ACATGT	1 cut(s)	533
Psp6I	CCWGG	4 cut(s)	259, 349, 481, 555
PspGI	CCWGG	4 cut(s)	259, 349, 481, 555
PspN4I	GGNNCC	3 cut(s)	340, 355, 487
PspPI	GGNCC	4 cut(s)	4, 263, 486, 505
Rsr2I	CGGWCCG	1 cut(s)	505
RsrII	CGGWCCG	1 cut(s)	505
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	2 cut(s)	255, 540
Sau96I	GGNCC	4 cut(s)	4, 263, 486, 505
SchI	GAGTC	2 cut(s)	396, 406
ScrFI	CCNGG	4 cut(s)	261, 351, 483, 557
SexAI	ACCWGGT	1 cut(s)	259
SinI	GGWCC	2 cut(s)	263, 505
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
Sse9I	AATT	4 cut(s)	437, 493, 528, 646
SsiI	CCGC	4 cut(s)	183, 198, 508, 539
StyD4I	CCNGG	4 cut(s)	259, 349, 481, 555
TaaI	ACNGT	1 cut(s)	620
TasI	AATT	4 cut(s)	437, 493, 528, 646
TauI	GCSGC	1 cut(s)	542
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TseI	GCWGC	1 cut(s)	254
TspDTI	ATGAA	1 cut(s)	615
TspGWI	ACGGA	2 cut(s)	218, 645
VpaK11BI	GGWCC	2 cut(s)	263, 505
XapI	RAATTY	2 cut(s)	437, 493
XceI	RCATGY	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.