Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011491

Physical Location & Seq

Genomic Coordinates Reverse (-)

15955042 .. 15960477

Gene Structure 5436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g18650.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCACAACGCTCTCATGTACCAAAGTTTGGCAATTGGGAAGGTGAAGAAAATGTTCCCTACACAGCCTATTTTGATAAGGCGCGAAAGGGTCGAACTGGGCCTGGGGGAAAGATGATTAATCCAAATGACCCCCAAGAGAACCCCGATCTCCTTAACGATATGTCATCAGTCGCGTCATCTCCTCCCAGAGTTAGAGCTGAACCAGAAAGACAAAATCATGAACGGGTAAGAAGTAGAGAGGATATTGACCAAAGGCAATATGCCAACTCTCCAGCACATCGCGAGAATCTGAGCCGCAGAAGTTCTGGTGAATCAACACATCAACCTGGTAGAGGACGTGGAACAAATTCTGGTGAAACTCATCGAAGAACTGCGCGACAAAGTGCTGGCTCTGAACAGAGCATTGAGCGTTCACCTCTCCATCGCCAGGCAAGAGCCTCAGGAAGAGATTCTCCCTCCTGGGAGGGAAAGCCTTCGTATGAAAGTAGCCATGGTACTCCTGGAAGATCCCGTCTTAAGCCTCGCGATGAAAGTCCTGACAAAGGTGCTGCTGTCCCGAAATTTGGTGAGTGGGATGAGAACAACCCTGCATCAGCTGATGGTTTCACTCACATTTTCAACAAAGTGAGGGAGGAGAAGGCAGGAAAAGTTCCCGGCACACCACCTGAGCCATCTTACTACACTTCACGGAAGCCTGCTGGCGGTGACAGTGCCAAGAGTTGCTGCTTTCCTTGGAGCAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002237 GO:0002253 GO:0002376 GO:0002682 GO:0002683 GO:0002684 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010204 GO:0010363 GO:0010941 GO:0012501 GO:0016020 GO:0016310 GO:0019538 GO:0019897 GO:0019898 GO:0023052 GO:0031347 GO:0031348 GO:0031349 GO:0033554 GO:0034050 GO:0034051 GO:0036211 GO:0042221 GO:0042742 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0045824 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050777 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0080135 GO:0098542 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

AvrRpt-cleavage

Protein Analysis

250

Amino Acids

27.67

Weight (kDa)

9.66

Isoelectric Point (pI)

68.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AvrRpt-cleavage	PF05627	4 - 33	5.2e-09	Cleavage site for pathogenic type III effector avirulence factor Avr
AvrRpt-cleavage	PF05627	183 - 215	1.1e-20	Cleavage site for pathogenic type III effector avirulence factor Avr

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25070 AT3G25070
fragaria_vesca	FvH4_2g18650 FvH4_2g18650 FvH4_2g18650
malus_domestica	MD05G1172400.v1.1 MD10G1160600.v1.1
prunus_persica	Prupe.8G199800_v2.0.a1
pyrus_communis	pycom05g15900 pycom10g13880
rosa_chinensis	RchiOBHm_Chr6g0284211
rosa_laevigata	RLG00000012756
rosa_multiflora	Rmu_sc0002698.1_g000030
rosa_roxburghii	Rroxscaffold_7G00184780
rosa_rugosa	Rorug06G0161900
rosa_samantha	Rh6AG274800 Rh6BG275300 Rh6CG277000 Rh6DG269700
rosa_wichuraiana	Rw6G023640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	29
AccII	CGCG	5 cut(s)	85, 176, 285, 379, 528
AciI	CCGC	2 cut(s)	298, 705
AclWI	GGATC	1 cut(s)	504
AcsI	RAATTY	2 cut(s)	349, 563
AfaI	GTAC	2 cut(s)	21, 499
AfiI	CCNNNNNNNGG	6 cut(s)	29, 335, 430, 545, 566, 704
AflII	CTTAAG	1 cut(s)	518
AgsI	TTSAA	1 cut(s)	622
AjiI	CACGTC	1 cut(s)	341
AjnI	CCWGG	5 cut(s)	103, 328, 429, 461, 502
AluBI	AGCT	2 cut(s)	200, 599
AluI	AGCT	2 cut(s)	200, 599
AlwI	GGATC	1 cut(s)	504
AoxI	GGCC	1 cut(s)	101
ApeKI	GCWGC	2 cut(s)	551, 726
ApoI	RAATTY	2 cut(s)	349, 563
AseI	ATTAAT	1 cut(s)	120
Asp700I	GAANNNNTTC	4 cut(s)	54, 349, 451, 475
AspLEI	GCGC	2 cut(s)	85, 379
AspS9I	GGNCC	1 cut(s)	101
AsuC2I	CCSGG	1 cut(s)	657
AsuHPI	GGTGA	6 cut(s)	56, 323, 368, 408, 581, 719
AxyI	CCTNAGG	1 cut(s)	442
BbvI	GCAGC	2 cut(s)	538, 713
BccI	CCATC	3 cut(s)	432, 596, 682
BciT130I	CCWGG	5 cut(s)	105, 330, 431, 463, 504
BcnI	CCSGG	1 cut(s)	657
BfrI	CTTAAG	1 cut(s)	518
BisI	GCNGC	3 cut(s)	298, 552, 727
BlsI	GCNGC	3 cut(s)	299, 553, 728
Bme1390I	CCNGG	6 cut(s)	105, 330, 431, 463, 504, 657
BmgBI	CACGTC	1 cut(s)	341
BmgT120I	GGNCC	1 cut(s)	101
BmrFI	CCNGG	6 cut(s)	105, 330, 431, 463, 504, 657
BmrI	ACTGGG	1 cut(s)	108
BmsI	GCATC	1 cut(s)	602
BmuI	ACTGGG	1 cut(s)	108
BpmI	CTGGAG	1 cut(s)	258
Bpu10I	CCTNAGC	1 cut(s)	669
BpuMI	CCSGG	1 cut(s)	657
BsaJI	CCNNGG	4 cut(s)	104, 462, 493, 734
Bsc4I	CCNNNNNNNGG	6 cut(s)	29, 335, 430, 545, 566, 704
Bse1I	ACTGG	1 cut(s)	103
Bse21I	CCTNAGG	1 cut(s)	442
BseBI	CCWGG	5 cut(s)	105, 330, 431, 463, 504
BseDI	CCNNGG	4 cut(s)	104, 462, 493, 734
BseGI	GGATG	1 cut(s)	583
BseLI	CCNNNNNNNGG	6 cut(s)	29, 335, 430, 545, 566, 704
BseMII	CTCAG	3 cut(s)	284, 456, 660
BseNI	ACTGG	1 cut(s)	103
BseRI	GAGGAG	2 cut(s)	174, 650
BseXI	GCAGC	2 cut(s)	538, 713
Bsh1236I	CGCG	5 cut(s)	85, 176, 285, 379, 528
BshFI	GGCC	1 cut(s)	103
BsiSI	CCGG	1 cut(s)	657
BslFI	GGGAC	1 cut(s)	542
BslI	CCNNNNNNNGG	6 cut(s)	29, 335, 430, 545, 566, 704
BsmFI	GGGAC	1 cut(s)	542
BsnI	GGCC	1 cut(s)	103
Bsp143I	GATC	2 cut(s)	148, 509
Bsp19I	CCATGG	1 cut(s)	493
Bsp68I	TCGCGA	2 cut(s)	285, 528
BspACI	CCGC	2 cut(s)	298, 705
BspANI	GGCC	1 cut(s)	103
BspCNI	CTCAG	3 cut(s)	285, 455, 661
BspFNI	CGCG	5 cut(s)	85, 176, 285, 379, 528
BspHI	TCATGA	1 cut(s)	220
BspPI	GGATC	1 cut(s)	504
BspTI	CTTAAG	1 cut(s)	518
BsrI	ACTGG	1 cut(s)	103
BssECI	CCNNGG	4 cut(s)	104, 462, 493, 734
BssMI	GATC	2 cut(s)	148, 509
BssT1I	CCWWGG	2 cut(s)	493, 734
Bst2UI	CCWGG	5 cut(s)	105, 330, 431, 463, 504
Bst4CI	ACNGT	1 cut(s)	713
Bst6I	CTCTTC	1 cut(s)	442
BstAFI	CTTAAG	1 cut(s)	518
BstC8I	GCNNGC	3 cut(s)	391, 699, 703
BstDEI	CTNAG	3 cut(s)	293, 442, 669
BstDSI	CCRYGG	1 cut(s)	493
BstENI	CCTNNNNNAGG	2 cut(s)	333, 543
BstF5I	GGATG	1 cut(s)	583
BstFNI	CGCG	5 cut(s)	85, 176, 285, 379, 528
BstHHI	GCGC	2 cut(s)	85, 379
BstKTI	GATC	2 cut(s)	151, 512
BstMBI	GATC	2 cut(s)	148, 509
BstNI	CCWGG	5 cut(s)	105, 330, 431, 463, 504
BstSCI	CCNGG	6 cut(s)	103, 328, 429, 461, 502, 655
BstUI	CGCG	5 cut(s)	85, 176, 285, 379, 528
BstV1I	GCAGC	2 cut(s)	538, 713
BstX2I	RGATCY	1 cut(s)	509
BstYI	RGATCY	1 cut(s)	509
Bsu36I	CCTNAGG	1 cut(s)	442
BsuRI	GGCC	1 cut(s)	103
BtgI	CCRYGG	1 cut(s)	493
BtgZI	GCGATG	3 cut(s)	266, 410, 543
BtrI	CACGTC	1 cut(s)	341
BtsCI	GGATG	1 cut(s)	583
BtsIMutI	CAGTG	1 cut(s)	718
BtuMI	TCGCGA	2 cut(s)	285, 528
Cac8I	GCNNGC	3 cut(s)	391, 699, 703
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	2 cut(s)	85, 379
Cfr13I	GGNCC	1 cut(s)	101
CseI	GACGC	1 cut(s)	165
CsiI	ACCWGGT	1 cut(s)	328
Csp6I	GTAC	2 cut(s)	20, 498
CviAII	CATG	3 cut(s)	17, 221, 494
CviQI	GTAC	2 cut(s)	20, 498
DdeI	CTNAG	3 cut(s)	293, 442, 669
DpnI	GATC	2 cut(s)	150, 511
DpnII	GATC	2 cut(s)	148, 509
Eam1104I	CTCTTC	1 cut(s)	442
EarI	CTCTTC	1 cut(s)	442
Eco130I	CCWWGG	2 cut(s)	493, 734
Eco81I	CCTNAGG	1 cut(s)	442
EcoNI	CCTNNNNNAGG	2 cut(s)	333, 543
EcoRII	CCWGG	5 cut(s)	103, 328, 429, 461, 502
EcoT14I	CCWWGG	2 cut(s)	493, 734
ErhI	CCWWGG	2 cut(s)	493, 734
FaeI	CATG	3 cut(s)	20, 224, 497
FaiI	YATR	6 cut(s)	18, 164, 222, 264, 483, 495
FaqI	GGGAC	1 cut(s)	542
FatI	CATG	3 cut(s)	16, 220, 493
Fnu4HI	GCNGC	3 cut(s)	298, 552, 727
FokI	GGATG	1 cut(s)	590
Fsp4HI	GCNGC	3 cut(s)	298, 552, 727
GlaI	GCGC	2 cut(s)	84, 378
GluI	GCNGC	3 cut(s)	298, 552, 727
GsuI	CTGGAG	1 cut(s)	258
HaeIII	GGCC	1 cut(s)	103
HapII	CCGG	1 cut(s)	657
HgaI	GACGC	1 cut(s)	165
HhaI	GCGC	2 cut(s)	85, 379
Hin1II	CATG	3 cut(s)	20, 224, 497
Hin6I	GCGC	2 cut(s)	83, 377
HinP1I	GCGC	2 cut(s)	83, 377
HinfI	GANTC	3 cut(s)	289, 314, 452
HpaII	CCGG	1 cut(s)	657
HphI	GGTGA	6 cut(s)	56, 323, 368, 408, 581, 719
Hpy166II	GTNNAC	1 cut(s)	416
Hpy188I	TCNGA	2 cut(s)	294, 397
Hpy188III	TCNNGA	6 cut(s)	221, 284, 444, 527, 539, 559
Hpy8I	GTNNAC	1 cut(s)	416
HpyAV	CCTTC	3 cut(s)	35, 486, 634
HpyCH4III	ACNGT	1 cut(s)	713
HpyCH4IV	ACGT	1 cut(s)	340
HpyCH4V	TGCA	1 cut(s)	593
HpyF3I	CTNAG	3 cut(s)	293, 442, 669
HpySE526I	ACGT	1 cut(s)	340
Hsp92II	CATG	3 cut(s)	20, 224, 497
HspAI	GCGC	2 cut(s)	83, 377
Kzo9I	GATC	2 cut(s)	148, 509
LmnI	GCTCC	1 cut(s)	738
Lsp1109I	GCAGC	2 cut(s)	538, 713
LweI	GCATC	1 cut(s)	602
MabI	ACCWGGT	1 cut(s)	328
MaeII	ACGT	1 cut(s)	340
MaeIII	GTNAC	1 cut(s)	707
MalI	GATC	2 cut(s)	150, 511
MboI	GATC	2 cut(s)	148, 509
MboII	GAAGA	4 cut(s)	59, 381, 459, 519
MfeI	CAATTG	1 cut(s)	34
MflI	RGATCY	1 cut(s)	509
MluCI	AATT	3 cut(s)	34, 349, 563
MroXI	GAANNNNTTC	4 cut(s)	54, 349, 451, 475
MseI	TTAA	3 cut(s)	120, 156, 519
MspA1I	CMGCKG	1 cut(s)	599
MspCI	CTTAAG	1 cut(s)	518
MspI	CCGG	1 cut(s)	657
MspR9I	CCNGG	6 cut(s)	105, 330, 431, 463, 504, 657
MunI	CAATTG	1 cut(s)	34
MvaI	CCWGG	5 cut(s)	105, 330, 431, 463, 504
MvnI	CGCG	5 cut(s)	85, 176, 285, 379, 528
NciI	CCSGG	1 cut(s)	657
NcoI	CCATGG	1 cut(s)	493
NdeII	GATC	2 cut(s)	148, 509
NlaIII	CATG	3 cut(s)	20, 224, 497
NmuCI	GTSAC	1 cut(s)	707
NruI	TCGCGA	2 cut(s)	285, 528
PagI	TCATGA	1 cut(s)	220
PdmI	GAANNNNTTC	4 cut(s)	54, 349, 451, 475
PfeI	GAWTC	3 cut(s)	289, 314, 452
PflMI	CCANNNNNTGG	1 cut(s)	29
PfoI	TCCNGGA	1 cut(s)	502
PkrI	GCNGC	3 cut(s)	299, 553, 728
PshBI	ATTAAT	1 cut(s)	120
Psp6I	CCWGG	5 cut(s)	103, 328, 429, 461, 502
PspGI	CCWGG	5 cut(s)	103, 328, 429, 461, 502
PspPI	GGNCC	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	509
PvuII	CAGCTG	1 cut(s)	599
RruI	TCGCGA	2 cut(s)	285, 528
RsaI	GTAC	2 cut(s)	21, 499
RsaNI	GTAC	2 cut(s)	20, 498
SaqAI	TTAA	3 cut(s)	120, 156, 519
SatI	GCNGC	3 cut(s)	298, 552, 727
Sau3AI	GATC	2 cut(s)	148, 509
Sau96I	GGNCC	1 cut(s)	101
ScrFI	CCNGG	6 cut(s)	105, 330, 431, 463, 504, 657
SetI	ASST	8 cut(s)	46, 202, 331, 343, 421, 550, 601, 670
SexAI	ACCWGGT	1 cut(s)	328
SfaNI	GCATC	1 cut(s)	602
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
Sse9I	AATT	3 cut(s)	34, 349, 563
SsiI	CCGC	2 cut(s)	298, 705
StyD4I	CCNGG	6 cut(s)	103, 328, 429, 461, 502, 655
StyI	CCWWGG	2 cut(s)	493, 734
TaaI	ACNGT	1 cut(s)	713
TaiI	ACGT	1 cut(s)	343
TaqI	TCGA	2 cut(s)	94, 367
TasI	AATT	3 cut(s)	34, 349, 563
TauI	GCSGC	1 cut(s)	300
TfiI	GAWTC	3 cut(s)	289, 314, 452
Tru1I	TTAA	3 cut(s)	120, 156, 519
Tru9I	TTAA	3 cut(s)	120, 156, 519
TscAI	CASTG	1 cut(s)	718
TseFI	GTSAC	1 cut(s)	707
TseI	GCWGC	2 cut(s)	551, 726
Tsp45I	GTSAC	1 cut(s)	707
TspDTI	ATGAA	3 cut(s)	237, 498, 546
TspGWI	ACGGA	1 cut(s)	706
TspRI	CASTG	1 cut(s)	718
Van91I	CCANNNNNTGG	1 cut(s)	29
Vha464I	CTTAAG	1 cut(s)	518
VspI	ATTAAT	1 cut(s)	120
XagI	CCTNNNNNAGG	2 cut(s)	333, 543
XapI	RAATTY	2 cut(s)	349, 563
XcmI	CCANNNNNNNNNTGG	1 cut(s)	500
XmnI	GAANNNNTTC	4 cut(s)	54, 349, 451, 475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.