Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012777

Physical Location & Seq

Genomic Coordinates Forward (+)

9174398 .. 9175866

Gene Structure 1469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G25190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGACTTCCAACGTTCAGCTTTCAGAAACAAACAGCCCAAGGAATCAGAAAACCCGTCCGAGAGCAGAGAAGGAGGAAGTGGACTACATGCAGAGAGCTCAGTGGCTAAGAGCTGCCTTGCTTGGAGCCAACGATGGTCTGGTCACAGTCGCTTCGCTAATGATGGGTGTTGGTTCTATCAAAGAAGACGTCAAAGCAATGCTTCTCGTTGGTTTTGCTGGCCTTGTTGCGGGTGCTTGTAGTATGGCTATTGGAGAGTTTGTGTCTGTGTGCACCCAAAGGGATATTGAAACTGCACAGATGAAGAGAGCTATTGAACATAAGACATCACTATCAGCAATCGACGAACAAGAGGAGGAGGAGAAGAAAGAAAGGCTGCCAAATCCAGGGCAAGCAGCAATTGCATCGGCGTTAGCGTTTTCAGTGGGTGCAGCAATGCCGCTTCTGGGCGCTGTATTCATAGAGAATCATAAGGTAAGAATGGTGGTGGTAGCGGTTGTGGCCACCATAGCATTGGTTGTGTTTGGAGTGACTGGTGCGGTCTTGGGAAAGACAAGTGTGGTTAAGTCGAGCGTCAGGGTGGTGATTGGTGGTTGGATGGCTATGGCTCTTACCTTTGGTCTCACCAAGTTCATTGGCTCTGCAGCCATGCAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000302 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0008150 GO:0008324 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0034755 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071421 GO:0071495 GO:0071731 GO:0071732 GO:0097366 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

219

Amino Acids

23.21

Weight (kDa)

8.58

Isoelectric Point (pI)

37.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	36 - 116	1.8e-23	VIT family
VIT1	PF01988	116 - 209	6.1e-18	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25190
fragaria_vesca	FvH4_6g05360 FvH4_6g06150
malus_domestica	MD04G1208900.v1.1 MD12G1223300.v1.1 MD12G1223400.v1.1
prunus_persica	Prupe.6G329900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454131
rosa_laevigata	RLG00000025480
rosa_multiflora	Rmu_co8428255.1_g000001 Rmu_sc0018584.1_g000003
rosa_roxburghii	Rroxscaffold_165G00436910
rosa_rugosa	Rorug02G0653500
rosa_samantha	Rh3AG056300 Rh3BG057700 Rh3CG057000 Rh3DG058200
rosa_wichuraiana	Rw3G004310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	192
AciI	CCGC	4 cut(s)	230, 440, 494, 539
AclI	AACGTT	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	501
AcyI	GRCGYC	1 cut(s)	189
AfiI	CCNNNNNNNGG	3 cut(s)	229, 386, 446
AgsI	TTSAA	2 cut(s)	290, 317
AjnI	CCWGG	1 cut(s)	385
AluBI	AGCT	4 cut(s)	19, 98, 113, 311
AluI	AGCT	4 cut(s)	19, 98, 113, 311
Alw21I	GWGCWC	2 cut(s)	100, 275
Alw26I	GTCTC	1 cut(s)	626
Alw44I	GTGCAC	1 cut(s)	271
AoxI	GGCC	2 cut(s)	220, 501
ApaLI	GTGCAC	1 cut(s)	271
ApeKI	GCWGC	5 cut(s)	113, 376, 395, 431, 644
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
AspLEI	GCGC	1 cut(s)	452
AsuHPI	GGTGA	2 cut(s)	595, 616
BaeGI	GKGCMC	1 cut(s)	275
BalI	TGGCCA	1 cut(s)	503
BanII	GRGCYC	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	192
Bbv12I	GWGCWC	2 cut(s)	100, 275
BbvI	GCAGC	5 cut(s)	100, 363, 407, 443, 656
BccI	CCATC	3 cut(s)	128, 157, 592
BcgI	CGANNNNNNTGC	2 cut(s)	387, 421
BciT130I	CCWGG	1 cut(s)	387
BcoDI	GTCTC	1 cut(s)	626
BfaI	CTAG	1 cut(s)	658
BfmI	CTRYAG	1 cut(s)	642
BfoI	RGCGCY	1 cut(s)	453
BisI	GCNGC	6 cut(s)	114, 377, 396, 432, 440, 645
BlsI	GCNGC	6 cut(s)	115, 378, 397, 433, 441, 646
Bme1390I	CCNGG	1 cut(s)	387
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	387
BmsI	GCATC	1 cut(s)	413
BpiI	GAAGAC	1 cut(s)	192
BsaHI	GRCGYC	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	626
BsaJI	CCNNGG	2 cut(s)	38, 386
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	3 cut(s)	229, 386, 446
Bse1I	ACTGG	1 cut(s)	538
Bse3DI	GCAATG	2 cut(s)	204, 441
BseBI	CCWGG	1 cut(s)	387
BseDI	CCNNGG	2 cut(s)	38, 386
BseGI	GGATG	1 cut(s)	603
BseLI	CCNNNNNNNGG	3 cut(s)	229, 386, 446
BseMI	GCAATG	2 cut(s)	204, 441
BseMII	CTCAG	1 cut(s)	113
BseNI	ACTGG	1 cut(s)	538
BseRI	GAGGAG	3 cut(s)	368, 371, 374
BseSI	GKGCMC	1 cut(s)	275
BseXI	GCAGC	5 cut(s)	100, 363, 407, 443, 656
BsgI	GTGCAG	2 cut(s)	279, 450
BshFI	GGCC	2 cut(s)	222, 503
BsiHKAI	GWGCWC	2 cut(s)	100, 275
BslI	CCNNNNNNNGG	3 cut(s)	229, 386, 446
BsmAI	GTCTC	1 cut(s)	626
BsnI	GGCC	2 cut(s)	222, 503
Bso31I	GGTCTC	1 cut(s)	626
Bsp1286I	GDGCHC	2 cut(s)	100, 275
BspACI	CCGC	4 cut(s)	230, 440, 494, 539
BspANI	GGCC	2 cut(s)	222, 503
BspCNI	CTCAG	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	127
BspMAI	CTGCAG	1 cut(s)	646
BspTNI	GGTCTC	1 cut(s)	626
BsrDI	GCAATG	2 cut(s)	204, 441
BsrI	ACTGG	1 cut(s)	538
BssECI	CCNNGG	2 cut(s)	38, 386
BssNI	GRCGYC	1 cut(s)	189
BssT1I	CCWWGG	1 cut(s)	38
Bst2UI	CCWGG	1 cut(s)	387
Bst4CI	ACNGT	1 cut(s)	148
Bst6I	CTCTTC	1 cut(s)	299
BstACI	GRCGYC	1 cut(s)	189
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstC8I	GCNNGC	2 cut(s)	220, 393
BstDEI	CTNAG	2 cut(s)	99, 107
BstF5I	GGATG	1 cut(s)	603
BstH2I	RGCGCY	1 cut(s)	453
BstHHI	GCGC	1 cut(s)	452
BstMAI	GTCTC	1 cut(s)	626
BstMWI	GCNNNNNNNGC	3 cut(s)	401, 500, 509
BstNI	CCWGG	1 cut(s)	387
BstNSI	RCATGY	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	385
BstSFI	CTRYAG	1 cut(s)	642
BstSLI	GKGCMC	1 cut(s)	275
BstV1I	GCAGC	5 cut(s)	100, 363, 407, 443, 656
BstV2I	GAAGAC	1 cut(s)	192
BstXI	CCANNNNNNTGG	1 cut(s)	514
BsuRI	GGCC	2 cut(s)	222, 503
BtsCI	GGATG	1 cut(s)	603
BtsIMutI	CAGTG	2 cut(s)	107, 429
Cac8I	GCNNGC	2 cut(s)	220, 393
CfoI	GCGC	1 cut(s)	452
CseI	GACGC	1 cut(s)	562
CviAII	CATG	2 cut(s)	88, 649
DdeI	CTNAG	2 cut(s)	99, 107
EaeI	YGGCCR	1 cut(s)	501
Eam1104I	CTCTTC	1 cut(s)	299
EarI	CTCTTC	1 cut(s)	299
Ecl136II	GAGCTC	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	38
Eco24I	GRGCYC	1 cut(s)	100
Eco31I	GGTCTC	1 cut(s)	626
Eco53kI	GAGCTC	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	385
EcoT14I	CCWWGG	1 cut(s)	38
EcoT38I	GRGCYC	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	38
FaeI	CATG	2 cut(s)	91, 652
FaiI	YATR	8 cut(s)	89, 245, 321, 461, 471, 509, 605, 650
FalI	AAGNNNNNCTT	2 cut(s)	186, 218
FatI	CATG	2 cut(s)	87, 648
FauI	CCCGC	1 cut(s)	223
Fnu4HI	GCNGC	6 cut(s)	114, 377, 396, 432, 440, 645
FokI	GGATG	1 cut(s)	610
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	6 cut(s)	114, 377, 396, 432, 440, 645
FspBI	CTAG	1 cut(s)	658
GlaI	GCGC	1 cut(s)	451
GluI	GCNGC	6 cut(s)	114, 377, 396, 432, 440, 645
HaeII	RGCGCY	1 cut(s)	453
HaeIII	GGCC	2 cut(s)	222, 503
HgaI	GACGC	1 cut(s)	562
HhaI	GCGC	1 cut(s)	452
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	2 cut(s)	91, 652
Hin6I	GCGC	1 cut(s)	450
HinP1I	GCGC	1 cut(s)	450
HinfI	GANTC	2 cut(s)	43, 466
HphI	GGTGA	2 cut(s)	595, 616
Hpy166II	GTNNAC	2 cut(s)	82, 273
Hpy188I	TCNGA	3 cut(s)	25, 48, 60
Hpy8I	GTNNAC	2 cut(s)	82, 273
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4IV	ACGT	2 cut(s)	12, 189
HpyCH4V	TGCA	7 cut(s)	91, 273, 296, 404, 431, 644, 652
HpyF10VI	GCNNNNNNNGC	3 cut(s)	401, 500, 509
HpyF3I	CTNAG	2 cut(s)	99, 107
HpySE526I	ACGT	2 cut(s)	12, 189
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	2 cut(s)	91, 652
HspAI	GCGC	1 cut(s)	450
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	7 cut(s)	125, 204, 372, 399, 431, 519, 562
Lsp1109I	GCAGC	5 cut(s)	100, 363, 407, 443, 656
LweI	GCATC	1 cut(s)	413
MaeI	CTAG	1 cut(s)	658
MaeII	ACGT	2 cut(s)	12, 189
MaeIII	GTNAC	2 cut(s)	142, 529
MboII	GAAGA	3 cut(s)	197, 316, 376
MfeI	CAATTG	1 cut(s)	399
MhlI	GDGCHC	2 cut(s)	100, 275
MlsI	TGGCCA	1 cut(s)	503
MluCI	AATT	1 cut(s)	399
MluNI	TGGCCA	1 cut(s)	503
MmeI	TCCRAC	2 cut(s)	33, 575
MnlI	CCTC	4 cut(s)	67, 346, 349, 352
Mox20I	TGGCCA	1 cut(s)	503
MscI	TGGCCA	1 cut(s)	503
MseI	TTAA	1 cut(s)	564
Msp20I	TGGCCA	1 cut(s)	503
MspR9I	CCNGG	1 cut(s)	387
MunI	CAATTG	1 cut(s)	399
MvaI	CCWGG	1 cut(s)	387
MwoI	GCNNNNNNNGC	3 cut(s)	401, 500, 509
NlaIII	CATG	2 cut(s)	91, 652
NlaIV	GGNNCC	1 cut(s)	127
NmuCI	GTSAC	2 cut(s)	142, 529
NspI	RCATGY	1 cut(s)	91
PcsI	WCGNNNNNNNCGW	1 cut(s)	413
PfeI	GAWTC	2 cut(s)	43, 466
PkrI	GCNGC	6 cut(s)	115, 378, 397, 433, 441, 646
Psp124BI	GAGCTC	1 cut(s)	100
Psp1406I	AACGTT	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	385
PspGI	CCWGG	1 cut(s)	385
PspN4I	GGNNCC	1 cut(s)	127
PstI	CTGCAG	1 cut(s)	646
SacI	GAGCTC	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	564
SatI	GCNGC	6 cut(s)	114, 377, 396, 432, 440, 645
ScrFI	CCNGG	1 cut(s)	387
SduI	GDGCHC	2 cut(s)	100, 275
SetI	ASST	8 cut(s)	15, 21, 100, 115, 192, 313, 477, 617
SfaNI	GCATC	1 cut(s)	413
SfcI	CTRYAG	1 cut(s)	642
Sse9I	AATT	1 cut(s)	399
SsiI	CCGC	4 cut(s)	230, 440, 494, 539
SspMI	CTAG	1 cut(s)	658
SstI	GAGCTC	1 cut(s)	100
StyD4I	CCNGG	1 cut(s)	385
StyI	CCWWGG	1 cut(s)	38
TaaI	ACNGT	1 cut(s)	148
TaiI	ACGT	2 cut(s)	15, 192
TaqI	TCGA	2 cut(s)	342, 569
TasI	AATT	1 cut(s)	399
TauI	GCSGC	1 cut(s)	442
TfiI	GAWTC	2 cut(s)	43, 466
Tru1I	TTAA	1 cut(s)	564
Tru9I	TTAA	1 cut(s)	564
TscAI	CASTG	2 cut(s)	107, 429
TseFI	GTSAC	2 cut(s)	142, 529
TseI	GCWGC	5 cut(s)	113, 376, 395, 431, 644
Tsp45I	GTSAC	2 cut(s)	142, 529
TspDTI	ATGAA	3 cut(s)	317, 448, 622
TspRI	CASTG	2 cut(s)	107, 429
VneI	GTGCAC	1 cut(s)	271
XceI	RCATGY	1 cut(s)	91
XcmI	CCANNNNNNNNNTGG	2 cut(s)	136, 511
XspI	CTAG	1 cut(s)	658
ZraI	GACGTC	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.