Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0012777

Physical Location & Seq

Genomic Coordinates Reverse (-)

28826653 .. 28827357

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G329900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCTGGCCAAGGAGCTCTTGAACAAGCTTCCACGAACCATATTGAGATTCCAGTTTATGGAAATGTTGCCGATCAGCCAAGACAACAATCCCAGAGGCCTGAAGATGAAGAAGATGAGACTTTTGACTACTCCCAGAGGACACAATGGCTTCGAGCCGCGGTGTTGGGAGCCAACGATGGGCTGGTCTCAGTTGCATCACTGATGATGGGCGTGGGAGCTGTGAAGCAAGACGTGAAAGCCATGCTGCTTGCAGGGTTTGCAGGGCTGGTGGCCGGGGCGTGCAGCATGGCGATAGGAGAGTTTGTCTCTGTGTACACTCAGTACGACATAGAGGTGTCTCAAATGAAAAGAGATGAGACGAGAACAAATGGTGCTGCTACGGAGAATGCACAAGAGGCAAAGAAGAAGAAGCTGCAGCTGCCAAATCCTGCACAGGCAGCTATGGCTTCAGCCATTGCATTTTCGATAGGTGCCGTGGTGCCTTTGCTAGGAGCTGCATTTATAAGTGAGCACAAGGTGAGGCTAGCCGTTGTGGTGGTCTTGGCAACCGTGGCGTTGGTTGTGTTCGGAGGAGTAGGAGCGAGGCTGGGAAGGACATCGATGATGAAATCTTGTGCCAGAGTTCTCGTCGGAGGATGGATGGCTATGGCTATTACTTTCGGACTCACCAAGTTAATTGGGTCTGGTGGTCTGGAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000302 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0008150 GO:0008324 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0034755 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071421 GO:0071495 GO:0071731 GO:0071732 GO:0097366 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

235

Amino Acids

24.58

Weight (kDa)

6.15

Isoelectric Point (pI)

41.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25190
fragaria_vesca	FvH4_6g05360 FvH4_6g06150
malus_domestica	MD04G1208900.v1.1 MD12G1223300.v1.1 MD12G1223400.v1.1
prunus_persica	Prupe.6G329900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454131
rosa_laevigata	RLG00000025480
rosa_multiflora	Rmu_co8428255.1_g000001 Rmu_sc0018584.1_g000003
rosa_roxburghii	Rroxscaffold_165G00436910
rosa_rugosa	Rorug02G0653500
rosa_samantha	Rh3AG056300 Rh3BG057700 Rh3CG057000 Rh3DG058200
rosa_wichuraiana	Rw3G004310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	506
AccB1I	GGYRCC	2 cut(s)	473, 481
AccB7I	CCANNNNNTGG	1 cut(s)	59
AccII	CGCG	1 cut(s)	161
AciI	CCGC	2 cut(s)	159, 161
AcoI	YGGCCR	2 cut(s)	7, 273
AcuI	CTGAAG	2 cut(s)	123, 435
AdeI	CACNNNGTG	1 cut(s)	520
AfaI	GTAC	2 cut(s)	317, 326
AfiI	CCNNNNNNNGG	3 cut(s)	59, 180, 491
AgsI	TTSAA	1 cut(s)	23
AjiI	CACGTC	1 cut(s)	235
AluBI	AGCT	7 cut(s)	17, 29, 221, 415, 421, 443, 497
AluI	AGCT	7 cut(s)	17, 29, 221, 415, 421, 443, 497
Alw21I	GWGCWC	2 cut(s)	19, 516
Alw26I	GTCTC	5 cut(s)	113, 193, 313, 345, 353
AoxI	GGCC	3 cut(s)	7, 98, 273
ApeKI	GCWGC	8 cut(s)	247, 285, 377, 415, 418, 421, 440, 497
AsuC2I	CCSGG	1 cut(s)	277
AsuHPI	GGTGA	2 cut(s)	532, 661
AsuNHI	GCTAGC	1 cut(s)	526
BalI	TGGCCA	1 cut(s)	9
BanI	GGYRCC	2 cut(s)	473, 481
BanII	GRGCYC	1 cut(s)	19
Bbv12I	GWGCWC	2 cut(s)	19, 516
BbvI	GCAGC	8 cut(s)	234, 297, 364, 402, 408, 430, 452, 484
BccI	CCATC	4 cut(s)	173, 202, 633, 637
BceAI	ACGGC	2 cut(s)	461, 515
BcnI	CCSGG	1 cut(s)	277
BcoDI	GTCTC	5 cut(s)	113, 193, 313, 345, 353
BfaI	CTAG	2 cut(s)	491, 527
BfmI	CTRYAG	1 cut(s)	416
BisI	GCNGC	9 cut(s)	159, 248, 286, 378, 416, 419, 422, 441, 498
BlsI	GCNGC	9 cut(s)	160, 249, 287, 379, 417, 420, 423, 442, 499
Bme1390I	CCNGG	1 cut(s)	277
BmgBI	CACGTC	1 cut(s)	235
BmiI	GGNNCC	3 cut(s)	172, 475, 483
BmrFI	CCNGG	1 cut(s)	277
BmsI	GCATC	1 cut(s)	206
BmtI	GCTAGC	1 cut(s)	530
BplI	GAGNNNNNCTC	2 cut(s)	293, 325
BpuMI	CCSGG	1 cut(s)	277
Bsa29I	ATCGAT	1 cut(s)	602
BsaI	GGTCTC	1 cut(s)	193
BsaJI	CCNNGG	5 cut(s)	10, 159, 276, 477, 552
BsaXI	ACNNNNNCTCC	2 cut(s)	291, 321
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 180, 491
Bse1I	ACTGG	1 cut(s)	53
Bse3DI	GCAATG	1 cut(s)	456
BseCI	ATCGAT	1 cut(s)	602
BseDI	CCNNGG	5 cut(s)	10, 159, 276, 477, 552
BseGI	GGATG	2 cut(s)	644, 648
BseLI	CCNNNNNNNGG	3 cut(s)	59, 180, 491
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	2 cut(s)	204, 335
BseNI	ACTGG	1 cut(s)	53
BseRI	GAGGAG	1 cut(s)	588
BseXI	GCAGC	8 cut(s)	234, 297, 364, 402, 408, 430, 452, 484
BseYI	CCCAGC	1 cut(s)	589
BsgI	GTGCAG	2 cut(s)	304, 417
Bsh1236I	CGCG	1 cut(s)	161
BshFI	GGCC	3 cut(s)	9, 100, 275
BshNI	GGYRCC	2 cut(s)	473, 481
BshVI	ATCGAT	1 cut(s)	602
BsiHKAI	GWGCWC	2 cut(s)	19, 516
BsiSI	CCGG	1 cut(s)	276
BslI	CCNNNNNNNGG	3 cut(s)	59, 180, 491
BsmAI	GTCTC	5 cut(s)	113, 193, 313, 345, 353
BsmBI	CGTCTC	1 cut(s)	353
BsmI	GAATGC	1 cut(s)	394
BsnI	GGCC	3 cut(s)	9, 100, 275
Bso31I	GGTCTC	1 cut(s)	193
Bsp1286I	GDGCHC	2 cut(s)	19, 516
Bsp1407I	TGTACA	1 cut(s)	315
Bsp143I	GATC	1 cut(s)	73
BspACI	CCGC	2 cut(s)	159, 161
BspANI	GGCC	3 cut(s)	9, 100, 275
BspCNI	CTCAG	2 cut(s)	203, 334
BspDI	ATCGAT	1 cut(s)	602
BspFNI	CGCG	1 cut(s)	161
BspLI	GGNNCC	3 cut(s)	172, 475, 483
BspMAI	CTGCAG	1 cut(s)	420
BspOI	GCTAGC	1 cut(s)	530
BspT107I	GGYRCC	2 cut(s)	473, 481
BspTNI	GGTCTC	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	456
BsrGI	TGTACA	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	53
BssECI	CCNNGG	5 cut(s)	10, 159, 276, 477, 552
BssMI	GATC	1 cut(s)	73
BssT1I	CCWWGG	1 cut(s)	10
Bst4CI	ACNGT	1 cut(s)	553
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstAUI	TGTACA	1 cut(s)	315
BstC8I	GCNNGC	4 cut(s)	7, 252, 283, 528
BstDEI	CTNAG	2 cut(s)	190, 321
BstDSI	CCRYGG	3 cut(s)	159, 477, 552
BstENI	CCTNNNNNAGG	1 cut(s)	489
BstF5I	GGATG	2 cut(s)	644, 648
BstFNI	CGCG	1 cut(s)	161
BstKTI	GATC	1 cut(s)	76
BstMAI	GTCTC	5 cut(s)	113, 193, 313, 345, 353
BstMBI	GATC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	6 cut(s)	260, 398, 421, 440, 446, 554
BstSCI	CCNGG	1 cut(s)	275
BstSFI	CTRYAG	1 cut(s)	416
BstUI	CGCG	1 cut(s)	161
BstV1I	GCAGC	8 cut(s)	234, 297, 364, 402, 408, 430, 452, 484
Bsu15I	ATCGAT	1 cut(s)	602
BsuRI	GGCC	3 cut(s)	9, 100, 275
BsuTUI	ATCGAT	1 cut(s)	602
BtgI	CCRYGG	3 cut(s)	159, 477, 552
BtrI	CACGTC	1 cut(s)	235
BtsCI	GGATG	2 cut(s)	644, 648
BtsIMutI	CAGTG	1 cut(s)	200
Cac8I	GCNNGC	4 cut(s)	7, 252, 283, 528
Cfr42I	CCGCGG	1 cut(s)	162
ClaI	ATCGAT	1 cut(s)	602
Csp6I	GTAC	2 cut(s)	316, 325
CviAII	CATG	2 cut(s)	244, 289
CviQI	GTAC	2 cut(s)	316, 325
DdeI	CTNAG	2 cut(s)	190, 321
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
DraIII	CACNNNGTG	1 cut(s)	520
EaeI	YGGCCR	2 cut(s)	7, 273
Ecl136II	GAGCTC	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	10
Eco147I	AGGCCT	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	19
Eco31I	GGTCTC	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	17
Eco57I	CTGAAG	2 cut(s)	123, 435
EcoICRI	GAGCTC	1 cut(s)	17
EcoNI	CCTNNNNNAGG	1 cut(s)	489
EcoT14I	CCWWGG	1 cut(s)	10
EcoT38I	GRGCYC	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	10
Esp3I	CGTCTC	1 cut(s)	353
FaeI	CATG	2 cut(s)	247, 292
FaiI	YATR	8 cut(s)	42, 60, 245, 290, 332, 446, 506, 650
FalI	AAGNNNNNCTT	1 cut(s)	35
FatI	CATG	2 cut(s)	243, 288
Fnu4HI	GCNGC	9 cut(s)	159, 248, 286, 378, 416, 419, 422, 441, 498
FokI	GGATG	2 cut(s)	651, 655
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	9 cut(s)	159, 248, 286, 378, 416, 419, 422, 441, 498
FspBI	CTAG	2 cut(s)	491, 527
GluI	GCNGC	9 cut(s)	159, 248, 286, 378, 416, 419, 422, 441, 498
GsaI	CCCAGC	1 cut(s)	593
HaeIII	GGCC	3 cut(s)	9, 100, 275
HapII	CCGG	1 cut(s)	276
Hin1II	CATG	2 cut(s)	247, 292
HindIII	AAGCTT	1 cut(s)	27
HinfI	GANTC	2 cut(s)	49, 666
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	2 cut(s)	532, 661
Hpy166II	GTNNAC	2 cut(s)	316, 318
Hpy188I	TCNGA	3 cut(s)	572, 635, 665
Hpy188III	TCNNGA	2 cut(s)	20, 695
Hpy8I	GTNNAC	2 cut(s)	316, 318
Hpy99I	CGWCG	1 cut(s)	635
HpyAV	CCTTC	1 cut(s)	588
HpyCH4III	ACNGT	1 cut(s)	553
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	9 cut(s)	197, 254, 263, 285, 392, 418, 434, 461, 500
HpyF10VI	GCNNNNNNNGC	6 cut(s)	260, 398, 421, 440, 446, 554
HpyF3I	CTNAG	2 cut(s)	190, 321
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	2 cut(s)	247, 292
KspI	CCGCGG	1 cut(s)	162
Kzo9I	GATC	1 cut(s)	73
LmnI	GCTCC	5 cut(s)	14, 170, 218, 494, 581
Lsp1109I	GCAGC	8 cut(s)	234, 297, 364, 402, 408, 430, 452, 484
LweI	GCATC	1 cut(s)	206
MaeI	CTAG	2 cut(s)	491, 527
MaeII	ACGT	1 cut(s)	234
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	5 cut(s)	116, 122, 125, 418, 421
MhlI	GDGCHC	2 cut(s)	19, 516
MlsI	TGGCCA	1 cut(s)	9
MluCI	AATT	1 cut(s)	678
MluNI	TGGCCA	1 cut(s)	9
MlyI	GAGTC	1 cut(s)	660
MmeI	TCCRAC	1 cut(s)	613
MnlI	CCTC	8 cut(s)	90, 132, 328, 391, 516, 566, 579, 629
Mox20I	TGGCCA	1 cut(s)	9
MscI	TGGCCA	1 cut(s)	9
MseI	TTAA	1 cut(s)	677
MslI	CAYNNNNRTG	1 cut(s)	335
Msp20I	TGGCCA	1 cut(s)	9
MspA1I	CMGCKG	2 cut(s)	161, 421
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	1 cut(s)	277
Mva1269I	GAATGC	1 cut(s)	394
MvnI	CGCG	1 cut(s)	161
MwoI	GCNNNNNNNGC	6 cut(s)	260, 398, 421, 440, 446, 554
NciI	CCSGG	1 cut(s)	277
NdeII	GATC	1 cut(s)	73
NheI	GCTAGC	1 cut(s)	526
NlaIII	CATG	2 cut(s)	247, 292
NlaIV	GGNNCC	3 cut(s)	172, 475, 483
PceI	AGGCCT	1 cut(s)	100
PctI	GAATGC	1 cut(s)	394
PfeI	GAWTC	1 cut(s)	49
PflMI	CCANNNNNTGG	1 cut(s)	59
PkrI	GCNGC	9 cut(s)	160, 249, 287, 379, 417, 420, 423, 442, 499
PleI	GAGTC	1 cut(s)	660
PpsI	GAGTC	1 cut(s)	660
PsiI	TTATAA	1 cut(s)	506
Psp124BI	GAGCTC	1 cut(s)	19
PspFI	CCCAGC	1 cut(s)	589
PspN4I	GGNNCC	3 cut(s)	172, 475, 483
PstI	CTGCAG	1 cut(s)	420
PvuII	CAGCTG	1 cut(s)	421
RsaI	GTAC	2 cut(s)	317, 326
RsaNI	GTAC	2 cut(s)	316, 325
RseI	CAYNNNNRTG	1 cut(s)	335
SacI	GAGCTC	1 cut(s)	19
SacII	CCGCGG	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	677
SatI	GCNGC	9 cut(s)	159, 248, 286, 378, 416, 419, 422, 441, 498
Sau3AI	GATC	1 cut(s)	73
SchI	GAGTC	1 cut(s)	660
ScrFI	CCNGG	1 cut(s)	277
SduI	GDGCHC	2 cut(s)	19, 516
SfaNI	GCATC	1 cut(s)	206
SfcI	CTRYAG	1 cut(s)	416
Sfr303I	CCGCGG	1 cut(s)	162
SgrBI	CCGCGG	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	335
Sse9I	AATT	1 cut(s)	678
SseBI	AGGCCT	1 cut(s)	100
SsiI	CCGC	2 cut(s)	159, 161
SspMI	CTAG	2 cut(s)	491, 527
SstI	GAGCTC	1 cut(s)	19
StuI	AGGCCT	1 cut(s)	100
StyD4I	CCNGG	1 cut(s)	275
StyI	CCWWGG	1 cut(s)	10
TaaI	ACNGT	1 cut(s)	553
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	3 cut(s)	154, 467, 602
TasI	AATT	1 cut(s)	678
TatI	WGTACW	1 cut(s)	315
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	1 cut(s)	677
Tru9I	TTAA	1 cut(s)	677
TscAI	CASTG	1 cut(s)	207
TseI	GCWGC	8 cut(s)	247, 285, 377, 415, 418, 421, 440, 497
TspDTI	ATGAA	3 cut(s)	123, 362, 623
TspGWI	ACGGA	1 cut(s)	398
TspRI	CASTG	1 cut(s)	207
Van91I	CCANNNNNTGG	1 cut(s)	59
XagI	CCTNNNNNAGG	1 cut(s)	489
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181
XspI	CTAG	2 cut(s)	491, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.