Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0012777

Physical Location & Seq

Genomic Coordinates Reverse (-)

3504868 .. 3505604

Gene Structure 737 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g06150.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCTGCCGAGGGAGCTCGTGATCAATCTCACATTGAGTTTTTAGAAATTTCAAGTGATGGAAATGAGGTTACGGACCCAAATAGACAAGCCGAAAAGCCTGAACACGACGACACTAGTTTCGACTACTCCAAAAGAACACAATGGCTTCGAGCTGCCATTTTAGGAGCCAATGATGGTCTGGTTTCGGTTGCATCGTTGATGATGGGCGTCGGAGCTGTGAAACAAGATGTGAAAGGCATGCTACTTCCCGCGGTTGCGGGACTAGTAGCAGGGGCATGCAGCATGGCCCTAGGGGAGTTTGTCTCCGTGTACGCTCAGTACCACACCGAGATGTCCCAAATGAAGAGAGAAATGATGGAAAAAAATGGCGGAGATGAGAAAACTATAGATGAGCAGGCAGTGAAGAAGAAGAATAGGCTGCCGAGCCCGGTGAAGGCAGCTATAGCATCGGCCATTTCATTTTCTATAGGTGCAGTGGTGCCTTTGCTGGGAGCTGTGTTTATAAAGGAGTATAAGGTAAGAATGGCTGTGGTGTCTGTTTTGGCAAGCGTTGGATTGGTTGTGTTGGGAGGAGTAGGAGCAACGTTGGGTGGAGCACCAGTTATGAGGTCTTGTGCAAGAGTGTTCCTTGGAGGATGGATGGCTATGGCTATCACATATGGACTCACCAAGTTAATTTGTTCTTCTACTACGTCTACGTATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000302 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0008150 GO:0008324 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0034755 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071421 GO:0071495 GO:0071731 GO:0071732 GO:0097366 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

237

Amino Acids

25.01

Weight (kDa)

6.83

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	50 - 122	1.7e-20	VIT family
VIT1	PF01988	133 - 224	4.8e-17	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25190
fragaria_vesca	FvH4_6g05360 FvH4_6g06150
malus_domestica	MD04G1208900.v1.1 MD12G1223300.v1.1 MD12G1223400.v1.1
prunus_persica	Prupe.6G329900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454131
rosa_laevigata	RLG00000025480
rosa_multiflora	Rmu_co8428255.1_g000001 Rmu_sc0018584.1_g000003
rosa_roxburghii	Rroxscaffold_165G00436910
rosa_rugosa	Rorug02G0653500
rosa_samantha	Rh3AG056300 Rh3BG057700 Rh3CG057000 Rh3DG058200
rosa_wichuraiana	Rw3G004310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	506
AccB1I	GGYRCC	1 cut(s)	481
AccI	GTMKAC	1 cut(s)	698
AccII	CGCG	1 cut(s)	254
AciI	CCGC	4 cut(s)	252, 254, 260, 372
AclI	AACGTT	1 cut(s)	587
AcoI	YGGCCR	1 cut(s)	453
AcsI	RAATTY	1 cut(s)	48
AcyI	GRCGYC	1 cut(s)	210
AfaI	GTAC	2 cut(s)	314, 323
AfiI	CCNNNNNNNGG	2 cut(s)	436, 491
AgsI	TTSAA	1 cut(s)	54
AhlI	ACTAGT	2 cut(s)	116, 265
AluBI	AGCT	5 cut(s)	17, 155, 218, 443, 497
AluI	AGCT	5 cut(s)	17, 155, 218, 443, 497
Alw21I	GWGCWC	2 cut(s)	19, 601
Alw26I	GTCTC	1 cut(s)	310
AoxI	GGCC	2 cut(s)	288, 453
ApeKI	GCWGC	5 cut(s)	5, 155, 282, 421, 440
ApoI	RAATTY	1 cut(s)	48
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
AspA2I	CCTAGG	1 cut(s)	292
AspS9I	GGNCC	2 cut(s)	76, 289
AsuC2I	CCSGG	1 cut(s)	431
AsuHPI	GGTGA	2 cut(s)	445, 661
AvaII	GGWCC	1 cut(s)	76
AvrII	CCTAGG	1 cut(s)	292
BanI	GGYRCC	1 cut(s)	481
BanII	GRGCYC	2 cut(s)	19, 431
BauI	CACGAG	1 cut(s)	18
Bbv12I	GWGCWC	2 cut(s)	19, 601
BbvI	GCAGC	4 cut(s)	142, 294, 408, 452
BccI	CCATC	6 cut(s)	53, 170, 199, 352, 633, 637
BclI	TGATCA	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	431
BcoDI	GTCTC	1 cut(s)	310
BcuI	ACTAGT	2 cut(s)	116, 265
BfaI	CTAG	3 cut(s)	117, 266, 293
BfmI	CTRYAG	3 cut(s)	387, 444, 468
BisI	GCNGC	5 cut(s)	6, 156, 283, 422, 441
BlnI	CCTAGG	1 cut(s)	292
BlsI	GCNGC	5 cut(s)	7, 157, 284, 423, 442
Bme1390I	CCNGG	1 cut(s)	431
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	76, 289
BmiI	GGNNCC	3 cut(s)	78, 169, 483
BmrFI	CCNGG	1 cut(s)	431
BmsI	GCATC	2 cut(s)	203, 458
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
BpuMI	CCSGG	1 cut(s)	431
BsaAI	YACGTR	1 cut(s)	702
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	4 cut(s)	9, 252, 292, 631
BsaXI	ACNNNNNCTCC	2 cut(s)	588, 618
Bsc4I	CCNNNNNNNGG	2 cut(s)	436, 491
Bse1I	ACTGG	1 cut(s)	602
BseDI	CCNNGG	4 cut(s)	9, 252, 292, 631
BseGI	GGATG	2 cut(s)	644, 648
BseLI	CCNNNNNNNGG	2 cut(s)	436, 491
BseMII	CTCAG	1 cut(s)	332
BseNI	ACTGG	1 cut(s)	602
BseRI	GAGGAG	1 cut(s)	588
BseXI	GCAGC	4 cut(s)	142, 294, 408, 452
BseYI	CCCAGC	1 cut(s)	490
BsgI	GTGCAG	1 cut(s)	495
Bsh1236I	CGCG	1 cut(s)	254
BshFI	GGCC	2 cut(s)	290, 455
BshNI	GGYRCC	1 cut(s)	481
BsiHKAI	GWGCWC	2 cut(s)	19, 601
BsiSI	CCGG	1 cut(s)	431
BslFI	GGGAC	2 cut(s)	276, 322
BslI	CCNNNNNNNGG	2 cut(s)	436, 491
BsmAI	GTCTC	1 cut(s)	310
BsmFI	GGGAC	2 cut(s)	276, 322
BsnI	GGCC	2 cut(s)	290, 455
Bsp1286I	GDGCHC	3 cut(s)	19, 431, 601
Bsp143I	GATC	1 cut(s)	22
BspACI	CCGC	4 cut(s)	252, 254, 260, 372
BspANI	GGCC	2 cut(s)	290, 455
BspCNI	CTCAG	1 cut(s)	331
BspFNI	CGCG	1 cut(s)	254
BspLI	GGNNCC	3 cut(s)	78, 169, 483
BspT107I	GGYRCC	1 cut(s)	481
BsrI	ACTGG	1 cut(s)	602
BssECI	CCNNGG	4 cut(s)	9, 252, 292, 631
BssMI	GATC	1 cut(s)	22
BssNI	GRCGYC	1 cut(s)	210
BssSI	CACGAG	1 cut(s)	18
BssT1I	CCWWGG	2 cut(s)	292, 631
Bst2BI	CACGAG	1 cut(s)	18
Bst6I	CTCTTC	1 cut(s)	341
BstACI	GRCGYC	1 cut(s)	210
BstBAI	YACGTR	1 cut(s)	702
BstC8I	GCNNGC	4 cut(s)	242, 280, 399, 550
BstDEI	CTNAG	1 cut(s)	318
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	2 cut(s)	644, 648
BstFNI	CGCG	1 cut(s)	254
BstKTI	GATC	1 cut(s)	25
BstMAI	GTCTC	1 cut(s)	310
BstMBI	GATC	1 cut(s)	22
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 446
BstNSI	RCATGY	2 cut(s)	244, 282
BstSCI	CCNGG	1 cut(s)	429
BstSFI	CTRYAG	3 cut(s)	387, 444, 468
BstSNI	TACGTA	1 cut(s)	702
BstUI	CGCG	1 cut(s)	254
BstV1I	GCAGC	4 cut(s)	142, 294, 408, 452
BsuRI	GGCC	2 cut(s)	290, 455
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	644, 648
BtsI	GCAGTG	2 cut(s)	408, 483
BtsIMutI	CAGTG	2 cut(s)	408, 483
Cac8I	GCNNGC	4 cut(s)	242, 280, 399, 550
Cfr13I	GGNCC	2 cut(s)	76, 289
Cfr42I	CCGCGG	1 cut(s)	255
CseI	GACGC	1 cut(s)	199
Csp6I	GTAC	2 cut(s)	313, 322
CviAII	CATG	3 cut(s)	241, 279, 286
CviQI	GTAC	2 cut(s)	313, 322
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	453
Eam1104I	CTCTTC	1 cut(s)	341
EarI	CTCTTC	1 cut(s)	341
EciI	GGCGGA	1 cut(s)	387
Ecl136II	GAGCTC	1 cut(s)	17
Eco105I	TACGTA	1 cut(s)	702
Eco130I	CCWWGG	2 cut(s)	292, 631
Eco24I	GRGCYC	2 cut(s)	19, 431
Eco47I	GGWCC	1 cut(s)	76
Eco53kI	GAGCTC	1 cut(s)	17
EcoICRI	GAGCTC	1 cut(s)	17
EcoT14I	CCWWGG	2 cut(s)	292, 631
EcoT38I	GRGCYC	2 cut(s)	19, 431
ErhI	CCWWGG	2 cut(s)	292, 631
FaeI	CATG	3 cut(s)	244, 282, 289
FaqI	GGGAC	2 cut(s)	276, 322
FatI	CATG	3 cut(s)	240, 278, 285
FauI	CCCGC	2 cut(s)	253, 259
FauNDI	CATATG	1 cut(s)	661
FbaI	TGATCA	1 cut(s)	22
FblI	GTMKAC	1 cut(s)	698
Fnu4HI	GCNGC	5 cut(s)	6, 156, 283, 422, 441
FokI	GGATG	2 cut(s)	651, 655
FriOI	GRGCYC	2 cut(s)	19, 431
Fsp4HI	GCNGC	5 cut(s)	6, 156, 283, 422, 441
FspBI	CTAG	3 cut(s)	117, 266, 293
GluI	GCNGC	5 cut(s)	6, 156, 283, 422, 441
GsaI	CCCAGC	1 cut(s)	494
HaeIII	GGCC	2 cut(s)	290, 455
HapII	CCGG	1 cut(s)	431
HgaI	GACGC	1 cut(s)	199
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	3 cut(s)	244, 282, 289
HinfI	GANTC	1 cut(s)	666
HpaII	CCGG	1 cut(s)	431
HphI	GGTGA	2 cut(s)	445, 661
Hpy166II	GTNNAC	2 cut(s)	313, 699
Hpy188I	TCNGA	1 cut(s)	215
Hpy188III	TCNNGA	1 cut(s)	20
Hpy8I	GTNNAC	2 cut(s)	313, 699
Hpy99I	CGWCG	2 cut(s)	113, 215
HpyAV	CCTTC	1 cut(s)	430
HpyCH4IV	ACGT	3 cut(s)	587, 695, 701
HpyCH4V	TGCA	4 cut(s)	194, 282, 476, 620
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 446
HpyF3I	CTNAG	1 cut(s)	318
HpySE526I	ACGT	3 cut(s)	587, 695, 701
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	3 cut(s)	244, 282, 289
Ksp22I	TGATCA	1 cut(s)	22
KspI	CCGCGG	1 cut(s)	255
Kzo9I	GATC	1 cut(s)	22
LmnI	GCTCC	6 cut(s)	14, 167, 215, 494, 581, 596
LpnPI	CCDG	7 cut(s)	114, 167, 258, 383, 444, 476, 615
Lsp1109I	GCAGC	4 cut(s)	142, 294, 408, 452
LweI	GCATC	2 cut(s)	203, 458
MaeI	CTAG	3 cut(s)	117, 266, 293
MaeII	ACGT	3 cut(s)	587, 695, 701
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	5 cut(s)	358, 418, 421, 424, 678
MhlI	GDGCHC	3 cut(s)	19, 431, 601
MluCI	AATT	2 cut(s)	48, 678
MlyI	GAGTC	1 cut(s)	660
MmeI	TCCRAC	2 cut(s)	193, 535
MnlI	CCTC	5 cut(s)	4, 61, 566, 603, 629
MseI	TTAA	1 cut(s)	677
MslI	CAYNNNNRTG	1 cut(s)	332
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	1 cut(s)	431
MspR9I	CCNGG	1 cut(s)	431
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	2 cut(s)	14, 446
NciI	CCSGG	1 cut(s)	431
NdeI	CATATG	1 cut(s)	661
NdeII	GATC	1 cut(s)	22
NlaIII	CATG	3 cut(s)	244, 282, 289
NlaIV	GGNNCC	3 cut(s)	78, 169, 483
NmeAIII	GCCGAG	2 cut(s)	34, 450
NspI	RCATGY	2 cut(s)	244, 282
PaeI	GCATGC	2 cut(s)	244, 282
PcsI	WCGNNNNNNNCGW	1 cut(s)	194
PkrI	GCNGC	5 cut(s)	7, 157, 284, 423, 442
PleI	GAGTC	1 cut(s)	660
PpsI	GAGTC	1 cut(s)	660
Ppu21I	YACGTR	1 cut(s)	702
PsiI	TTATAA	1 cut(s)	506
Psp124BI	GAGCTC	1 cut(s)	19
Psp1406I	AACGTT	1 cut(s)	587
PspFI	CCCAGC	1 cut(s)	490
PspN4I	GGNNCC	3 cut(s)	78, 169, 483
PspPI	GGNCC	2 cut(s)	76, 289
RsaI	GTAC	2 cut(s)	314, 323
RsaNI	GTAC	2 cut(s)	313, 322
RseI	CAYNNNNRTG	1 cut(s)	332
SacI	GAGCTC	1 cut(s)	19
SacII	CCGCGG	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	677
SatI	GCNGC	5 cut(s)	6, 156, 283, 422, 441
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	2 cut(s)	76, 289
SchI	GAGTC	1 cut(s)	660
ScrFI	CCNGG	1 cut(s)	431
SduI	GDGCHC	3 cut(s)	19, 431, 601
SfaNI	GCATC	2 cut(s)	203, 458
SfcI	CTRYAG	3 cut(s)	387, 444, 468
Sfr303I	CCGCGG	1 cut(s)	255
SgrBI	CCGCGG	1 cut(s)	255
SinI	GGWCC	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	332
SnaBI	TACGTA	1 cut(s)	702
SpeI	ACTAGT	2 cut(s)	116, 265
SphI	GCATGC	2 cut(s)	244, 282
Sse9I	AATT	2 cut(s)	48, 678
SsiI	CCGC	4 cut(s)	252, 254, 260, 372
SspMI	CTAG	3 cut(s)	117, 266, 293
SstI	GAGCTC	1 cut(s)	19
StyD4I	CCNGG	1 cut(s)	429
StyI	CCWWGG	2 cut(s)	292, 631
TaiI	ACGT	3 cut(s)	590, 698, 704
TaqI	TCGA	2 cut(s)	123, 151
TasI	AATT	2 cut(s)	48, 678
Tru1I	TTAA	1 cut(s)	677
Tru9I	TTAA	1 cut(s)	677
TscAI	CASTG	2 cut(s)	408, 483
TseI	GCWGC	5 cut(s)	5, 155, 282, 421, 440
TspDTI	ATGAA	2 cut(s)	359, 450
TspGWI	ACGGA	2 cut(s)	89, 298
TspRI	CASTG	2 cut(s)	408, 483
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	1 cut(s)	48
XceI	RCATGY	2 cut(s)	244, 282
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178
XmaJI	CCTAGG	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	698
XspI	CTAG	3 cut(s)	117, 266, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.