Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0012777

Physical Location & Seq

Genomic Coordinates Forward (+)

3751562 .. 3751969

Gene Structure 408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G004310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCAATAGGGGAATTTGTCTCTGTGTACACTCAATATGACATAGAGATATCCCAAATGAAAAGAGAGATGATGAAAGGGAATGGTGGTAACGAGAATGCGGAAGAAGCAAAGAAGAAGAAGCTGCCAAACCCGGCACAGGCTGCCATAGCATCCGCGATTGCGTTTTCTATAGGTGCAGTGGTGCCTTTGTTGGGAGCTGCATTTATAGGAGAGCATAAGGTGAGGATGCTGGTGGTGGCTCTTTTGGCAAGTATTGCACTAGTAGTGTTCGGAGGGATCGGAGCAAGGTTGGGGAGGACACCCATGATCAAGTCTTGTGTTAGAGTACTCATTGGAGGATGGATGGCTATGGCTATCACCTTTGGACTCACGAAGTTGATTGGCTCTGCGGGTCTAGAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000302 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0008150 GO:0008324 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0034755 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071421 GO:0071495 GO:0071731 GO:0071732 GO:0097366 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

135

Amino Acids

14.2

Weight (kDa)

9.61

Isoelectric Point (pI)

26.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	39 - 125	9.4e-18	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25190
fragaria_vesca	FvH4_6g05360 FvH4_6g06150
malus_domestica	MD04G1208900.v1.1 MD12G1223300.v1.1 MD12G1223400.v1.1
prunus_persica	Prupe.6G329900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454131
rosa_laevigata	RLG00000025480
rosa_multiflora	Rmu_co8428255.1_g000001 Rmu_sc0018584.1_g000003
rosa_roxburghii	Rroxscaffold_165G00436910
rosa_rugosa	Rorug02G0653500
rosa_samantha	Rh3AG056300 Rh3BG057700 Rh3CG057000 Rh3DG058200
rosa_wichuraiana	Rw3G004310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	184
AccII	CGCG	1 cut(s)	158
AciI	CCGC	3 cut(s)	101, 156, 392
AclWI	GGATC	1 cut(s)	287
AcsI	RAATTY	1 cut(s)	14
AfaI	GTAC	2 cut(s)	29, 330
AfiI	CCNNNNNNNGG	2 cut(s)	139, 194
AhlI	ACTAGT	1 cut(s)	262
AluBI	AGCT	2 cut(s)	124, 200
AluI	AGCT	2 cut(s)	124, 200
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	1 cut(s)	287
ApeKI	GCWGC	3 cut(s)	124, 143, 200
ApoI	RAATTY	1 cut(s)	14
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	2 cut(s)	235, 352
BanI	GGYRCC	1 cut(s)	184
BbvI	GCAGC	3 cut(s)	111, 130, 187
BccI	CCATC	2 cut(s)	336, 340
BclI	TGATCA	1 cut(s)	309
BcnI	CCSGG	1 cut(s)	134
BcoDI	GTCTC	1 cut(s)	25
BcuI	ACTAGT	1 cut(s)	262
BfaI	CTAG	2 cut(s)	263, 398
BfmI	CTRYAG	1 cut(s)	171
BisI	GCNGC	3 cut(s)	125, 144, 201
BlsI	GCNGC	3 cut(s)	126, 145, 202
BmcAI	AGTACT	1 cut(s)	330
Bme1390I	CCNGG	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	1 cut(s)	134
BmsI	GCATC	2 cut(s)	161, 219
BpuMI	CCSGG	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 194
BseGI	GGATG	4 cut(s)	152, 234, 347, 351
BseLI	CCNNNNNNNGG	2 cut(s)	139, 194
BseXI	GCAGC	3 cut(s)	111, 130, 187
BsgI	GTGCAG	1 cut(s)	198
Bsh1236I	CGCG	1 cut(s)	158
BshNI	GGYRCC	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	134
BslI	CCNNNNNNNGG	2 cut(s)	139, 194
BsmAI	GTCTC	1 cut(s)	25
BsmI	GAATGC	1 cut(s)	103
Bsp1407I	TGTACA	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	279, 309
BspACI	CCGC	3 cut(s)	101, 156, 392
BspFNI	CGCG	1 cut(s)	158
BspLI	GGNNCC	1 cut(s)	186
BspPI	GGATC	1 cut(s)	287
BspT107I	GGYRCC	1 cut(s)	184
BsrGI	TGTACA	1 cut(s)	27
BssMI	GATC	2 cut(s)	279, 309
BstAPI	GCANNNNNTGC	2 cut(s)	143, 257
BstAUI	TGTACA	1 cut(s)	27
BstF5I	GGATG	4 cut(s)	152, 234, 347, 351
BstFNI	CGCG	1 cut(s)	158
BstKTI	GATC	2 cut(s)	282, 312
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	2 cut(s)	279, 309
BstMWI	GCNNNNNNNGC	5 cut(s)	107, 143, 149, 248, 257
BstSCI	CCNGG	1 cut(s)	132
BstSFI	CTRYAG	1 cut(s)	171
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	3 cut(s)	111, 130, 187
BtsCI	GGATG	4 cut(s)	152, 234, 347, 351
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	186
Csp6I	GTAC	2 cut(s)	28, 329
CviAII	CATG	1 cut(s)	307
CviJI	RGCY	7 cut(s)	124, 143, 200, 242, 350, 356, 387
CviKI_1	RGCY	7 cut(s)	124, 143, 200, 242, 350, 356, 387
CviQI	GTAC	2 cut(s)	28, 329
DpnI	GATC	2 cut(s)	281, 311
DpnII	GATC	2 cut(s)	279, 309
Eco32I	GATATC	1 cut(s)	51
EcoRV	GATATC	1 cut(s)	51
FaeI	CATG	1 cut(s)	310
FaiI	YATR	8 cut(s)	39, 44, 149, 173, 209, 219, 308, 353
FatI	CATG	1 cut(s)	306
FauI	CCCGC	1 cut(s)	385
FbaI	TGATCA	1 cut(s)	309
Fnu4HI	GCNGC	3 cut(s)	125, 144, 201
FokI	GGATG	4 cut(s)	139, 241, 354, 358
Fsp4HI	GCNGC	3 cut(s)	125, 144, 201
FspBI	CTAG	2 cut(s)	263, 398
GluI	GCNGC	3 cut(s)	125, 144, 201
HapII	CCGG	1 cut(s)	134
Hin1II	CATG	1 cut(s)	310
HinfI	GANTC	1 cut(s)	369
HpaII	CCGG	1 cut(s)	134
HphI	GGTGA	2 cut(s)	235, 352
Hpy166II	GTNNAC	2 cut(s)	28, 30
Hpy188I	TCNGA	2 cut(s)	275, 284
Hpy188III	TCNNGA	2 cut(s)	373, 398
Hpy8I	GTNNAC	2 cut(s)	28, 30
HpyCH4V	TGCA	3 cut(s)	179, 203, 260
HpyF10VI	GCNNNNNNNGC	5 cut(s)	107, 143, 149, 248, 257
Hsp92II	CATG	1 cut(s)	310
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	2 cut(s)	279, 309
LmnI	GCTCC	2 cut(s)	197, 284
LpnPI	CCDG	3 cut(s)	125, 147, 218
Lsp1109I	GCAGC	3 cut(s)	111, 130, 187
LweI	GCATC	2 cut(s)	161, 219
MaeI	CTAG	2 cut(s)	263, 398
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	2 cut(s)	281, 311
MboI	GATC	2 cut(s)	279, 309
MboII	GAAGA	3 cut(s)	116, 127, 130
MluCI	AATT	1 cut(s)	14
MlyI	GAGTC	1 cut(s)	363
MnlI	CCTC	4 cut(s)	219, 269, 291, 332
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	1 cut(s)	134
Mva1269I	GAATGC	1 cut(s)	103
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	5 cut(s)	107, 143, 149, 248, 257
NciI	CCSGG	1 cut(s)	134
NdeII	GATC	2 cut(s)	279, 309
NlaIII	CATG	1 cut(s)	310
NlaIV	GGNNCC	1 cut(s)	186
PctI	GAATGC	1 cut(s)	103
PkrI	GCNGC	3 cut(s)	126, 145, 202
PleI	GAGTC	1 cut(s)	363
PpsI	GAGTC	1 cut(s)	363
PspN4I	GGNNCC	1 cut(s)	186
RsaI	GTAC	2 cut(s)	29, 330
RsaNI	GTAC	2 cut(s)	28, 329
SatI	GCNGC	3 cut(s)	125, 144, 201
Sau3AI	GATC	2 cut(s)	279, 309
ScaI	AGTACT	1 cut(s)	330
SchI	GAGTC	1 cut(s)	363
ScrFI	CCNGG	1 cut(s)	134
SetI	ASST	6 cut(s)	126, 178, 202, 225, 293, 365
SfaNI	GCATC	2 cut(s)	161, 219
SfcI	CTRYAG	1 cut(s)	171
SpeI	ACTAGT	1 cut(s)	262
Sse9I	AATT	1 cut(s)	14
SsiI	CCGC	3 cut(s)	101, 156, 392
SspMI	CTAG	2 cut(s)	263, 398
StyD4I	CCNGG	1 cut(s)	132
TasI	AATT	1 cut(s)	14
TatI	WGTACW	2 cut(s)	27, 328
TscAI	CASTG	1 cut(s)	186
TseI	GCWGC	3 cut(s)	124, 143, 200
TspDTI	ATGAA	2 cut(s)	74, 89
TspRI	CASTG	1 cut(s)	186
XapI	RAATTY	1 cut(s)	14
XbaI	TCTAGA	1 cut(s)	397
XspI	CTAG	2 cut(s)	263, 398
ZrmI	AGTACT	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.