Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000165

Orthogroup ID

OG0012777

Physical Location & Seq

Genomic Coordinates Forward (+)

6790 .. 7479

Gene Structure 690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_165G00436910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCTGCCCAAGGAGCTCGTGACCAAACTCCCATTGGCCACATAGAGATTCCGGTTTCATTTCCATTAGCTACAGACCAAAACAGACTACCCCAAGTGCCCGAAGAAGACGACAGTTTTGACTACTCCGAAAGAACACAATGGATTCGGGCAGCTGTTTTGGGAGCTAATGATGGTTTGGTCTCTGTTGCATCACTAATGATGGGTGTTGGAGCTGTCAAACAAGAAGTGAAAGCGATGCTCCTGGCCGGGTTTGCTGGGCTAGTAGCAGGGGCATGCAGCATGGCAATAGGGGAATTTGTCTCTGTGTACACTCAATATGACATAGAGATATCCCAAATGAAAAGAGAGATGATGAAAGGGAATGGTGGAAATGAGAATGCGGAAGAAGCAAAGAAGAAGAAGCTGCCAAACCCGGCACAGGCTGCCATAGCATCCGCTATTGCTTTTTCTATAGGTGCAGTGGTGCCTTTGTTGGGAGCTGCATTTATAGGAGAGCATAAGGTGAGGATGCTAGTGGTGGCTCTTTTGGCAAGTATTACACTAGTAGTGTTCGGAGGGATCGGAGCAAGGTTGGGGAGGACACCCATGATGAAGTCTTGTGTTAGAGTACTCATTGGAGGATGGATGGCTATGGCTATCACCTTTGGACTCACAAAGTTGATTGGCTCTGCGGGTCTAGACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000302 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0008150 GO:0008324 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0034755 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071421 GO:0071495 GO:0071731 GO:0071732 GO:0097366 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

229

Amino Acids

24.07

Weight (kDa)

6.74

Isoelectric Point (pI)

35.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	49 - 119	7.7e-23	VIT family
VIT1	PF01988	133 - 219	3e-17	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25190
fragaria_vesca	FvH4_6g05360 FvH4_6g06150
malus_domestica	MD04G1208900.v1.1 MD12G1223300.v1.1 MD12G1223400.v1.1
prunus_persica	Prupe.6G329900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454131
rosa_laevigata	RLG00000025480
rosa_multiflora	Rmu_co8428255.1_g000001 Rmu_sc0018584.1_g000003
rosa_roxburghii	Rroxscaffold_165G00436910
rosa_rugosa	Rorug02G0653500
rosa_samantha	Rh3AG056300 Rh3BG057700 Rh3CG057000 Rh3DG058200
rosa_wichuraiana	Rw3G004310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	466
AciI	CCGC	3 cut(s)	383, 438, 674
AclWI	GGATC	1 cut(s)	569
AcoI	YGGCCR	2 cut(s)	37, 246
AcsI	RAATTY	1 cut(s)	296
AfaI	GTAC	2 cut(s)	311, 612
AfiI	CCNNNNNNNGG	2 cut(s)	421, 476
AflIII	ACRYGT	1 cut(s)	684
AhlI	ACTAGT	1 cut(s)	544
AjnI	CCWGG	1 cut(s)	243
AluBI	AGCT	7 cut(s)	17, 71, 155, 167, 215, 406, 482
AluI	AGCT	7 cut(s)	17, 71, 155, 167, 215, 406, 482
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	2 cut(s)	187, 307
AlwI	GGATC	1 cut(s)	569
AoxI	GGCC	2 cut(s)	37, 246
ApeKI	GCWGC	6 cut(s)	5, 152, 279, 406, 425, 482
ApoI	RAATTY	1 cut(s)	296
ArsI	GACNNNNNNTTYG	2 cut(s)	101, 133
AsuC2I	CCSGG	2 cut(s)	250, 416
AsuHPI	GGTGA	2 cut(s)	517, 634
BaeGI	GKGCMC	1 cut(s)	102
BalI	TGGCCA	1 cut(s)	39
BanI	GGYRCC	1 cut(s)	466
BanII	GRGCYC	1 cut(s)	19
BauI	CACGAG	1 cut(s)	18
BbsI	GAAGAC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	5 cut(s)	164, 291, 393, 412, 469
BccI	CCATC	4 cut(s)	167, 196, 618, 622
BciT130I	CCWGG	1 cut(s)	245
BcnI	CCSGG	2 cut(s)	250, 416
BcoDI	GTCTC	2 cut(s)	187, 307
BcuI	ACTAGT	1 cut(s)	544
BfaI	CTAG	4 cut(s)	263, 515, 545, 680
BfmI	CTRYAG	2 cut(s)	72, 453
BisI	GCNGC	6 cut(s)	6, 153, 280, 407, 426, 483
BlsI	GCNGC	6 cut(s)	7, 154, 281, 408, 427, 484
BmcAI	AGTACT	1 cut(s)	612
Bme1390I	CCNGG	3 cut(s)	245, 250, 416
BmiI	GGNNCC	1 cut(s)	468
BmrFI	CCNGG	3 cut(s)	245, 250, 416
BmsI	GCATC	4 cut(s)	200, 228, 443, 501
BpiI	GAAGAC	1 cut(s)	114
BpuMI	CCSGG	2 cut(s)	250, 416
BsaI	GGTCTC	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	10
BsaWI	WCCGGW	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	2 cut(s)	421, 476
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	10
BseGI	GGATG	4 cut(s)	434, 516, 629, 633
BseLI	CCNNNNNNNGG	2 cut(s)	421, 476
BseSI	GKGCMC	1 cut(s)	102
BseXI	GCAGC	5 cut(s)	164, 291, 393, 412, 469
BseYI	CCCAGC	1 cut(s)	257
BsgI	GTGCAG	1 cut(s)	480
BshFI	GGCC	2 cut(s)	39, 248
BshNI	GGYRCC	1 cut(s)	466
BsiHKAI	GWGCWC	1 cut(s)	19
BsiSI	CCGG	3 cut(s)	53, 249, 416
BslI	CCNNNNNNNGG	2 cut(s)	421, 476
BsmAI	GTCTC	2 cut(s)	187, 307
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	2 cut(s)	39, 248
Bso31I	GGTCTC	1 cut(s)	187
Bsp1286I	GDGCHC	2 cut(s)	19, 102
Bsp1407I	TGTACA	1 cut(s)	309
Bsp143I	GATC	1 cut(s)	561
BspACI	CCGC	3 cut(s)	383, 438, 674
BspANI	GGCC	2 cut(s)	39, 248
BspLI	GGNNCC	1 cut(s)	468
BspPI	GGATC	1 cut(s)	569
BspT107I	GGYRCC	1 cut(s)	466
BspTNI	GGTCTC	1 cut(s)	187
BsrGI	TGTACA	1 cut(s)	309
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	1 cut(s)	561
BssSI	CACGAG	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	10
Bst2BI	CACGAG	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	1 cut(s)	116
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstAUI	TGTACA	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	277
BstF5I	GGATG	4 cut(s)	434, 516, 629, 633
BstKTI	GATC	1 cut(s)	564
BstMAI	GTCTC	2 cut(s)	187, 307
BstMBI	GATC	1 cut(s)	561
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 254, 389, 425, 431, 530
BstNI	CCWGG	1 cut(s)	245
BstNSI	RCATGY	2 cut(s)	279, 688
BstSCI	CCNGG	3 cut(s)	243, 248, 414
BstSFI	CTRYAG	2 cut(s)	72, 453
BstSLI	GKGCMC	1 cut(s)	102
BstV1I	GCAGC	5 cut(s)	164, 291, 393, 412, 469
BstV2I	GAAGAC	1 cut(s)	114
BsuRI	GGCC	2 cut(s)	39, 248
BtgZI	GCGATG	1 cut(s)	251
BtsCI	GGATG	4 cut(s)	434, 516, 629, 633
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	1 cut(s)	277
Csp6I	GTAC	2 cut(s)	310, 611
CviAII	CATG	4 cut(s)	276, 283, 589, 685
CviQI	GTAC	2 cut(s)	310, 611
DpnI	GATC	1 cut(s)	563
DpnII	GATC	1 cut(s)	561
EaeI	YGGCCR	2 cut(s)	37, 246
Ecl136II	GAGCTC	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	10
Eco24I	GRGCYC	1 cut(s)	19
Eco31I	GGTCTC	1 cut(s)	187
Eco32I	GATATC	1 cut(s)	333
Eco53kI	GAGCTC	1 cut(s)	17
EcoICRI	GAGCTC	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	243
EcoRV	GATATC	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	10
EcoT38I	GRGCYC	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	10
FaeI	CATG	4 cut(s)	279, 286, 592, 688
FatI	CATG	4 cut(s)	275, 282, 588, 684
FauI	CCCGC	1 cut(s)	667
Fnu4HI	GCNGC	6 cut(s)	6, 153, 280, 407, 426, 483
FokI	GGATG	4 cut(s)	421, 523, 636, 640
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	6 cut(s)	6, 153, 280, 407, 426, 483
FspBI	CTAG	4 cut(s)	263, 515, 545, 680
GluI	GCNGC	6 cut(s)	6, 153, 280, 407, 426, 483
GsaI	CCCAGC	1 cut(s)	261
HaeIII	GGCC	2 cut(s)	39, 248
HapII	CCGG	3 cut(s)	53, 249, 416
Hin1II	CATG	4 cut(s)	279, 286, 592, 688
HinfI	GANTC	3 cut(s)	49, 145, 651
HpaII	CCGG	3 cut(s)	53, 249, 416
HphI	GGTGA	2 cut(s)	517, 634
Hpy166II	GTNNAC	2 cut(s)	310, 312
Hpy188I	TCNGA	3 cut(s)	130, 557, 566
Hpy188III	TCNNGA	2 cut(s)	20, 680
Hpy8I	GTNNAC	2 cut(s)	310, 312
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4V	TGCA	4 cut(s)	191, 279, 461, 485
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 254, 389, 425, 431, 530
Hsp92II	CATG	4 cut(s)	279, 286, 592, 688
Kzo9I	GATC	1 cut(s)	561
LmnI	GCTCC	6 cut(s)	14, 164, 212, 246, 479, 566
LpnPI	CCDG	8 cut(s)	66, 230, 243, 255, 257, 262, 407, 429
Lsp1109I	GCAGC	5 cut(s)	164, 291, 393, 412, 469
LweI	GCATC	4 cut(s)	200, 228, 443, 501
MaeI	CTAG	4 cut(s)	263, 515, 545, 680
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	1 cut(s)	563
MboI	GATC	1 cut(s)	561
MboII	GAAGA	5 cut(s)	116, 119, 398, 409, 412
MhlI	GDGCHC	2 cut(s)	19, 102
MlsI	TGGCCA	1 cut(s)	39
MluCI	AATT	1 cut(s)	296
MluNI	TGGCCA	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	645
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	4 cut(s)	501, 551, 573, 614
Mox20I	TGGCCA	1 cut(s)	39
MscI	TGGCCA	1 cut(s)	39
Msp20I	TGGCCA	1 cut(s)	39
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	3 cut(s)	53, 249, 416
MspR9I	CCNGG	3 cut(s)	245, 250, 416
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	6 cut(s)	14, 254, 389, 425, 431, 530
NciI	CCSGG	2 cut(s)	250, 416
NdeII	GATC	1 cut(s)	561
NlaIII	CATG	4 cut(s)	279, 286, 592, 688
NlaIV	GGNNCC	1 cut(s)	468
NmuCI	GTSAC	1 cut(s)	20
NspI	RCATGY	2 cut(s)	279, 688
PaeI	GCATGC	1 cut(s)	279
PciI	ACATGT	1 cut(s)	684
PctI	GAATGC	1 cut(s)	385
PfeI	GAWTC	2 cut(s)	49, 145
PkrI	GCNGC	6 cut(s)	7, 154, 281, 408, 427, 484
PleI	GAGTC	1 cut(s)	645
PpsI	GAGTC	1 cut(s)	645
PscI	ACATGT	1 cut(s)	684
Psp124BI	GAGCTC	1 cut(s)	19
Psp6I	CCWGG	1 cut(s)	243
PspFI	CCCAGC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	1 cut(s)	468
PvuII	CAGCTG	1 cut(s)	155
RsaI	GTAC	2 cut(s)	311, 612
RsaNI	GTAC	2 cut(s)	310, 611
SacI	GAGCTC	1 cut(s)	19
SatI	GCNGC	6 cut(s)	6, 153, 280, 407, 426, 483
Sau3AI	GATC	1 cut(s)	561
ScaI	AGTACT	1 cut(s)	612
SchI	GAGTC	1 cut(s)	645
ScrFI	CCNGG	3 cut(s)	245, 250, 416
SduI	GDGCHC	2 cut(s)	19, 102
SfaNI	GCATC	4 cut(s)	200, 228, 443, 501
SfcI	CTRYAG	2 cut(s)	72, 453
SpeI	ACTAGT	1 cut(s)	544
SphI	GCATGC	1 cut(s)	279
Sse9I	AATT	1 cut(s)	296
SsiI	CCGC	3 cut(s)	383, 438, 674
SspMI	CTAG	4 cut(s)	263, 515, 545, 680
SstI	GAGCTC	1 cut(s)	19
StyD4I	CCNGG	3 cut(s)	243, 248, 414
StyI	CCWWGG	1 cut(s)	10
TaaI	ACNGT	1 cut(s)	116
TasI	AATT	1 cut(s)	296
TatI	WGTACW	2 cut(s)	309, 610
TfiI	GAWTC	2 cut(s)	49, 145
TscAI	CASTG	1 cut(s)	468
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	6 cut(s)	5, 152, 279, 406, 425, 482
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	4 cut(s)	48, 356, 371, 608
TspRI	CASTG	1 cut(s)	468
XapI	RAATTY	1 cut(s)	296
XbaI	TCTAGA	1 cut(s)	679
XceI	RCATGY	2 cut(s)	279, 688
XcmI	CCANNNNNNNNNTGG	1 cut(s)	32
XspI	CTAG	4 cut(s)	263, 515, 545, 680
ZrmI	AGTACT	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.