Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0012777

Physical Location & Seq

Genomic Coordinates Forward (+)

3017070 .. 3017759

Gene Structure 690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g05360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCTGCCCAAGGAGCTCGTGACAAAACTCCCATTGGCCACATAGAGATTCCAATTTCATTTCCATTAGCTACAGATCAAATCAGACTACCCCAACTGCCTGAAGAAGATGACAGTTTTGACTACTCTGAAAGAACACAATGGATTCGAGCAGCTGTCTTGGGAGCTAATGACGGTTTGGTCTCTGTTGCATCACTGATGATGGGAGTTGGAGCTGTCAAACAAGACGTGAAAGCAATGCTGCTAGCTGGGTTTGCCGGGCTAGTAGCAGGAGCATGCAGCATGGCAATAGGGGAGTTTGTCTCTGTGTACACACAATATGACATAGAGATATCCCAAATGAAAAGAGAGGTGATGAAAGGGAATGGTGGAAGCGCGAGTGAGGAAGAAGCAAAGAAGAAGAAGCTGCCAAATCCGGCGCAGGCTGCCATAGCATCGGCGATTGCATTTTCCATAGGTGCAGTCGTGCCTTTGTTGGGAGCTGCATTTATCGGCCAGCACAATGTGAGGATGCTTGTGGTGGCTCTTTTGGCAAGTATTGCACTGGTAGTCTTTGGAGGGATCGGAGCAAGGATGGGGAGGACACCTATGATTAACTCTTGTGTTAGAGTACTCATTGGAGGATGGATGGCCATGGCTATCACCTTTGGACTCACCAAGTTGATTGGCTCTGCTGGTTTAGACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000302 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0008150 GO:0008324 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0034755 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071421 GO:0071495 GO:0071731 GO:0071732 GO:0097366 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

230

Amino Acids

23.94

Weight (kDa)

6.73

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	49 - 117	1.1e-22	VIT family
VIT1	PF01988	133 - 219	8.7e-17	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25190
fragaria_vesca	FvH4_6g05360 FvH4_6g06150
malus_domestica	MD04G1208900.v1.1 MD12G1223300.v1.1 MD12G1223400.v1.1
prunus_persica	Prupe.6G329900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454131
rosa_laevigata	RLG00000025480
rosa_multiflora	Rmu_co8428255.1_g000001 Rmu_sc0018584.1_g000003
rosa_roxburghii	Rroxscaffold_165G00436910
rosa_rugosa	Rorug02G0653500
rosa_samantha	Rh3AG056300 Rh3BG057700 Rh3CG057000 Rh3DG058200
rosa_wichuraiana	Rw3G004310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AccII	CGCG	1 cut(s)	377
AclWI	GGATC	1 cut(s)	569
AcoI	YGGCCR	3 cut(s)	37, 493, 630
AcuI	CTGAAG	1 cut(s)	123
AdeI	CACNNNGTG	1 cut(s)	505
AfaI	GTAC	2 cut(s)	311, 612
AfiI	CCNNNNNNNGG	1 cut(s)	476
AflIII	ACRYGT	1 cut(s)	684
AjiI	CACGTC	1 cut(s)	229
AluBI	AGCT	8 cut(s)	17, 71, 155, 167, 215, 248, 406, 482
AluI	AGCT	8 cut(s)	17, 71, 155, 167, 215, 248, 406, 482
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	2 cut(s)	187, 307
AlwI	GGATC	1 cut(s)	569
AoxI	GGCC	3 cut(s)	37, 493, 630
ApeKI	GCWGC	7 cut(s)	5, 152, 241, 279, 406, 425, 482
AspLEI	GCGC	2 cut(s)	377, 421
AsuC2I	CCSGG	1 cut(s)	259
AsuHPI	GGTGA	3 cut(s)	364, 634, 646
AsuNHI	GCTAGC	1 cut(s)	244
BalI	TGGCCA	2 cut(s)	39, 632
BanII	GRGCYC	1 cut(s)	19
BauI	CACGAG	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	6 cut(s)	164, 228, 291, 393, 412, 469
BccI	CCATC	4 cut(s)	196, 568, 618, 622
BcnI	CCSGG	1 cut(s)	259
BcoDI	GTCTC	2 cut(s)	187, 307
BfaI	CTAG	2 cut(s)	245, 263
BfmI	CTRYAG	1 cut(s)	72
BisI	GCNGC	7 cut(s)	6, 153, 242, 280, 407, 426, 483
BlsI	GCNGC	7 cut(s)	7, 154, 243, 281, 408, 427, 484
BmcAI	AGTACT	1 cut(s)	612
Bme1390I	CCNGG	1 cut(s)	259
BmgBI	CACGTC	1 cut(s)	229
BmrFI	CCNGG	1 cut(s)	259
BmsI	GCATC	3 cut(s)	200, 443, 501
BmtI	GCTAGC	1 cut(s)	248
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
BpuMI	CCSGG	1 cut(s)	259
BsaI	GGTCTC	1 cut(s)	187
BsaJI	CCNNGG	2 cut(s)	10, 633
Bsc4I	CCNNNNNNNGG	1 cut(s)	476
Bse1I	ACTGG	1 cut(s)	549
Bse3DI	GCAATG	1 cut(s)	243
BseDI	CCNNGG	2 cut(s)	10, 633
BseGI	GGATG	4 cut(s)	516, 579, 629, 633
BseLI	CCNNNNNNNGG	1 cut(s)	476
BseMI	GCAATG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	549
BseXI	GCAGC	6 cut(s)	164, 228, 291, 393, 412, 469
BseYI	CCCAGC	1 cut(s)	248
BsgI	GTGCAG	1 cut(s)	480
Bsh1236I	CGCG	1 cut(s)	377
BshFI	GGCC	3 cut(s)	39, 495, 632
BsiHKAI	GWGCWC	1 cut(s)	19
BsiSI	CCGG	2 cut(s)	258, 416
BslI	CCNNNNNNNGG	1 cut(s)	476
BsmAI	GTCTC	2 cut(s)	187, 307
BsnI	GGCC	3 cut(s)	39, 495, 632
Bso31I	GGTCTC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp1407I	TGTACA	1 cut(s)	309
Bsp143I	GATC	2 cut(s)	76, 561
Bsp19I	CCATGG	1 cut(s)	633
BspANI	GGCC	3 cut(s)	39, 495, 632
BspFNI	CGCG	1 cut(s)	377
BspOI	GCTAGC	1 cut(s)	248
BspPI	GGATC	1 cut(s)	569
BspTNI	GGTCTC	1 cut(s)	187
BsrDI	GCAATG	1 cut(s)	243
BsrGI	TGTACA	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	549
BssECI	CCNNGG	2 cut(s)	10, 633
BssMI	GATC	2 cut(s)	76, 561
BssSI	CACGAG	1 cut(s)	18
BssT1I	CCWWGG	2 cut(s)	10, 633
Bst2BI	CACGAG	1 cut(s)	18
Bst4CI	ACNGT	2 cut(s)	116, 176
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstAUI	TGTACA	1 cut(s)	309
BstC8I	GCNNGC	4 cut(s)	246, 277, 423, 497
BstDSI	CCRYGG	1 cut(s)	633
BstF5I	GGATG	4 cut(s)	516, 579, 629, 633
BstFNI	CGCG	1 cut(s)	377
BstHHI	GCGC	2 cut(s)	377, 421
BstKTI	GATC	2 cut(s)	79, 564
BstMAI	GTCTC	2 cut(s)	187, 307
BstMBI	GATC	2 cut(s)	76, 561
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 254, 425, 431, 530, 539
BstNSI	RCATGY	2 cut(s)	279, 688
BstSCI	CCNGG	1 cut(s)	257
BstSFI	CTRYAG	1 cut(s)	72
BstUI	CGCG	1 cut(s)	377
BstV1I	GCAGC	6 cut(s)	164, 228, 291, 393, 412, 469
BsuRI	GGCC	3 cut(s)	39, 495, 632
BtgI	CCRYGG	1 cut(s)	633
BtrI	CACGTC	1 cut(s)	229
BtsCI	GGATG	4 cut(s)	516, 579, 629, 633
BtsIMutI	CAGTG	2 cut(s)	194, 542
Cac8I	GCNNGC	4 cut(s)	246, 277, 423, 497
CfoI	GCGC	2 cut(s)	377, 421
Csp6I	GTAC	2 cut(s)	310, 611
CviAII	CATG	4 cut(s)	276, 283, 634, 685
CviQI	GTAC	2 cut(s)	310, 611
DpnI	GATC	2 cut(s)	78, 563
DpnII	GATC	2 cut(s)	76, 561
DraIII	CACNNNGTG	1 cut(s)	505
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
EaeI	YGGCCR	3 cut(s)	37, 493, 630
Ecl136II	GAGCTC	1 cut(s)	17
Eco130I	CCWWGG	2 cut(s)	10, 633
Eco24I	GRGCYC	1 cut(s)	19
Eco31I	GGTCTC	1 cut(s)	187
Eco32I	GATATC	1 cut(s)	333
Eco53kI	GAGCTC	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	123
EcoICRI	GAGCTC	1 cut(s)	17
EcoRV	GATATC	1 cut(s)	333
EcoT14I	CCWWGG	2 cut(s)	10, 633
EcoT38I	GRGCYC	1 cut(s)	19
ErhI	CCWWGG	2 cut(s)	10, 633
FaeI	CATG	4 cut(s)	279, 286, 637, 688
FatI	CATG	4 cut(s)	275, 282, 633, 684
Fnu4HI	GCNGC	7 cut(s)	6, 153, 242, 280, 407, 426, 483
FokI	GGATG	4 cut(s)	523, 586, 636, 640
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	7 cut(s)	6, 153, 242, 280, 407, 426, 483
FspBI	CTAG	2 cut(s)	245, 263
GlaI	GCGC	2 cut(s)	376, 420
GluI	GCNGC	7 cut(s)	6, 153, 242, 280, 407, 426, 483
GsaI	CCCAGC	1 cut(s)	252
HaeIII	GGCC	3 cut(s)	39, 495, 632
HapII	CCGG	2 cut(s)	258, 416
HhaI	GCGC	2 cut(s)	377, 421
Hin1II	CATG	4 cut(s)	279, 286, 637, 688
Hin6I	GCGC	2 cut(s)	375, 419
HinP1I	GCGC	2 cut(s)	375, 419
HinfI	GANTC	3 cut(s)	49, 145, 651
HpaII	CCGG	2 cut(s)	258, 416
HphI	GGTGA	3 cut(s)	364, 634, 646
Hpy166II	GTNNAC	2 cut(s)	310, 312
Hpy188I	TCNGA	3 cut(s)	86, 130, 566
Hpy188III	TCNNGA	1 cut(s)	20
Hpy8I	GTNNAC	2 cut(s)	310, 312
HpyCH4III	ACNGT	2 cut(s)	116, 176
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	6 cut(s)	191, 279, 446, 461, 485, 542
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 254, 425, 431, 530, 539
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	4 cut(s)	279, 286, 637, 688
HspAI	GCGC	2 cut(s)	375, 419
Kzo9I	GATC	2 cut(s)	76, 561
LmnI	GCTCC	6 cut(s)	14, 164, 212, 272, 479, 566
LpnPI	CCDG	9 cut(s)	114, 234, 255, 271, 407, 429, 509, 530, 660
Lsp1109I	GCAGC	6 cut(s)	164, 228, 291, 393, 412, 469
LweI	GCATC	3 cut(s)	200, 443, 501
MaeI	CTAG	2 cut(s)	245, 263
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	2 cut(s)	78, 563
MboI	GATC	2 cut(s)	76, 561
MboII	GAAGA	5 cut(s)	116, 119, 398, 409, 412
MhlI	GDGCHC	1 cut(s)	19
MlsI	TGGCCA	2 cut(s)	39, 632
MluCI	AATT	1 cut(s)	54
MluNI	TGGCCA	2 cut(s)	39, 632
MlyI	GAGTC	1 cut(s)	645
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	6 cut(s)	343, 376, 501, 551, 573, 614
Mox20I	TGGCCA	2 cut(s)	39, 632
MscI	TGGCCA	2 cut(s)	39, 632
MseI	TTAA	1 cut(s)	594
Msp20I	TGGCCA	2 cut(s)	39, 632
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	2 cut(s)	258, 416
MspR9I	CCNGG	1 cut(s)	259
MvnI	CGCG	1 cut(s)	377
MwoI	GCNNNNNNNGC	6 cut(s)	14, 254, 425, 431, 530, 539
NciI	CCSGG	1 cut(s)	259
NcoI	CCATGG	1 cut(s)	633
NdeII	GATC	2 cut(s)	76, 561
NheI	GCTAGC	1 cut(s)	244
NlaIII	CATG	4 cut(s)	279, 286, 637, 688
NmuCI	GTSAC	1 cut(s)	20
NspI	RCATGY	2 cut(s)	279, 688
PaeI	GCATGC	1 cut(s)	279
PciI	ACATGT	1 cut(s)	684
PfeI	GAWTC	2 cut(s)	49, 145
PkrI	GCNGC	7 cut(s)	7, 154, 243, 281, 408, 427, 484
PleI	GAGTC	1 cut(s)	645
PpsI	GAGTC	1 cut(s)	645
PscI	ACATGT	1 cut(s)	684
Psp124BI	GAGCTC	1 cut(s)	19
PspFI	CCCAGC	1 cut(s)	248
PvuII	CAGCTG	1 cut(s)	155
RsaI	GTAC	2 cut(s)	311, 612
RsaNI	GTAC	2 cut(s)	310, 611
SacI	GAGCTC	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	594
SatI	GCNGC	7 cut(s)	6, 153, 242, 280, 407, 426, 483
Sau3AI	GATC	2 cut(s)	76, 561
ScaI	AGTACT	1 cut(s)	612
SchI	GAGTC	1 cut(s)	645
ScrFI	CCNGG	1 cut(s)	259
SduI	GDGCHC	1 cut(s)	19
SfaNI	GCATC	3 cut(s)	200, 443, 501
SfcI	CTRYAG	1 cut(s)	72
SphI	GCATGC	1 cut(s)	279
Sse9I	AATT	1 cut(s)	54
SspMI	CTAG	2 cut(s)	245, 263
SstI	GAGCTC	1 cut(s)	19
StyD4I	CCNGG	1 cut(s)	257
StyI	CCWWGG	2 cut(s)	10, 633
TaaI	ACNGT	2 cut(s)	116, 176
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	1 cut(s)	148
TasI	AATT	1 cut(s)	54
TatI	WGTACW	2 cut(s)	309, 610
TfiI	GAWTC	2 cut(s)	49, 145
Tru1I	TTAA	1 cut(s)	594
Tru9I	TTAA	1 cut(s)	594
TscAI	CASTG	2 cut(s)	201, 549
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	7 cut(s)	5, 152, 241, 279, 406, 425, 482
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	3 cut(s)	48, 356, 371
TspRI	CASTG	2 cut(s)	201, 549
XceI	RCATGY	2 cut(s)	279, 688
XspI	CTAG	2 cut(s)	245, 263
ZrmI	AGTACT	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.