Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009238

Physical Location & Seq

Genomic Coordinates Forward (+)

9503056 .. 9504680

Gene Structure 1625 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G25980.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCGTCCAAAACAGCGGCTGCTAAAGATATCATCACTTTACACGGATCTGCTGCCATCGTCAGCGAATTCTTCTGTTACGCTGCGAACAGTATATTGTATAATCGTGCAGTTTATCCAGAGGAAAGTTTTGTGAAAGTGAAGAAATATGGACTTCCGATGTTGCTTATTGAAGATGAATCCGTCAAATCTTTCATGTCTAATCTCACTTCTCAGATCTCCGAATGGCTTGAAGCTGGGAAGTTGCAGAGAGTAGTGTTAGTGATTATGAGTAAAGCTACTGGTGAAGTCTTGGAGAGGTGGAATTTTCGTATTGAGACTGATAATGAAGTTGTTGACAAAGGTGTGTCGAGGGAGAAGAGTGATAAGGAGATCATGAGGGAGATTCAAGCTATTATGAGACAGGTTGCTTCAAGTGTTACTTACTTGCCTTGTCTTGATGAAACATGTGTGTTTGATGTATTGGCGTATACGGATACTGATGTGGCTGTTCCATTCACTTGGATCGAGAGCGACCCGAAGTTGATTGCTAATCCACAGATGGTTAAGTTACACGGTTTTGATACCAAGATTCACAAAGTCGACACGCTTGTCTCATACAAGAACGACGAGTGGGATGAAGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000775 GO:0000776 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005737 GO:0005819 GO:0005828 GO:0005856 GO:0005874 GO:0005876 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0009987 GO:0010369 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015630 GO:0022402 GO:0030071 GO:0031577 GO:0031967 GO:0031975 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04914 ko05166 map04110 map04111 map04113 map04114 map04914 map05166

Pfam Domains

Protein Families

HORMA

Protein Analysis

209

Amino Acids

23.73

Weight (kDa)

4.84

Isoelectric Point (pI)

37.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HORMA	PF02301	25 - 188	3.1e-18	HORMA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0009238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25980 AT3G25980 AT3G25980 AT3G25980
fragaria_vesca	FvH4_4g24620 FvH4_4g24620 FvH4_4g24620 FvH4_4g24620
malus_domestica	MD13G1109700.v1.1 MD16G1109600.v1.1
prunus_persica	Prupe.1G235300_v2.0.a1 Prupe.1G235600_v2.0.a1
pyrus_communis	pycom13g09550 pycom16g09320
rosa_chinensis	RchiOBHm_Chr4g0431671
rosa_laevigata	RLG00000006898
rosa_multiflora	Rmu_sc0005185.1_g000006 Rmu_sc0011757.1_g000004
rosa_roxburghii	Rroxscaffold_5G00373110
rosa_rugosa	Rorug04G0251700
rosa_samantha	Rh4DG310800
rosa_wichuraiana	Rw4G026740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	590
AccI	GTMKAC	2 cut(s)	470, 582
AciI	CCGC	1 cut(s)	17
AclWI	GGATC	2 cut(s)	55, 512
AcsI	RAATTY	2 cut(s)	68, 304
AcyI	GRCGYC	1 cut(s)	5
AflIII	ACRYGT	1 cut(s)	446
AgsI	TTSAA	4 cut(s)	173, 233, 389, 414
AluBI	AGCT	3 cut(s)	236, 278, 392
AluI	AGCT	3 cut(s)	236, 278, 392
Alw26I	GTCTC	3 cut(s)	311, 394, 598
AlwI	GGATC	2 cut(s)	55, 512
AlwNI	CAGNNNCTG	1 cut(s)	20
ApeKI	GCWGC	3 cut(s)	20, 53, 83
ApoI	RAATTY	2 cut(s)	68, 304
AsuHPI	GGTGA	1 cut(s)	296
BaeI	ACNNNNGTAYC	2 cut(s)	468, 501
BbvI	GCAGC	3 cut(s)	7, 40, 70
BccI	CCATC	2 cut(s)	65, 535
BciVI	GTATCC	1 cut(s)	469
BcoDI	GTCTC	3 cut(s)	311, 394, 598
BfuI	GTATCC	1 cut(s)	469
BglII	AGATCT	1 cut(s)	216
BisI	GCNGC	4 cut(s)	18, 21, 54, 84
BlsI	GCNGC	4 cut(s)	19, 22, 55, 85
BsaHI	GRCGYC	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	286
BseGI	GGATG	1 cut(s)	622
BseMII	CTCAG	1 cut(s)	227
BseNI	ACTGG	1 cut(s)	286
BseXI	GCAGC	3 cut(s)	7, 40, 70
BseYI	CCCAGC	1 cut(s)	236
BsgI	GTGCAG	1 cut(s)	129
BsmAI	GTCTC	3 cut(s)	311, 394, 598
Bsp143I	GATC	4 cut(s)	47, 216, 372, 504
BspACI	CCGC	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	226
BspHI	TCATGA	1 cut(s)	375
BspPI	GGATC	2 cut(s)	55, 512
BsrI	ACTGG	1 cut(s)	286
BssMI	GATC	4 cut(s)	47, 216, 372, 504
BssNAI	GTATAC	1 cut(s)	471
BssNI	GRCGYC	1 cut(s)	5
Bst1107I	GTATAC	1 cut(s)	471
Bst4CI	ACNGT	2 cut(s)	92, 557
Bst6I	CTCTTC	2 cut(s)	353, 618
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	622
BstKTI	GATC	4 cut(s)	50, 219, 375, 507
BstMAI	GTCTC	3 cut(s)	311, 394, 598
BstMBI	GATC	4 cut(s)	47, 216, 372, 504
BstNSI	RCATGY	1 cut(s)	450
BstV1I	GCAGC	3 cut(s)	7, 40, 70
BstX2I	RGATCY	2 cut(s)	47, 216
BstXI	CCANNNNNNTGG	1 cut(s)	501
BstYI	RGATCY	2 cut(s)	47, 216
BstZ17I	GTATAC	1 cut(s)	471
BsuI	GTATCC	1 cut(s)	469
BtsCI	GGATG	1 cut(s)	622
CaiI	CAGNNNCTG	1 cut(s)	20
CciI	TCATGA	1 cut(s)	375
CviAII	CATG	3 cut(s)	196, 376, 447
CviJI	RGCY	6 cut(s)	20, 229, 236, 278, 392, 488
CviKI_1	RGCY	6 cut(s)	20, 229, 236, 278, 392, 488
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	4 cut(s)	49, 218, 374, 506
DpnII	GATC	4 cut(s)	47, 216, 372, 504
DrdI	GACNNNNNNGTC	1 cut(s)	590
DseDI	GACNNNNNNGTC	1 cut(s)	590
Eam1104I	CTCTTC	2 cut(s)	353, 618
EarI	CTCTTC	2 cut(s)	353, 618
Eco32I	GATATC	1 cut(s)	31
EcoRI	GAATTC	1 cut(s)	68
EcoRV	GATATC	1 cut(s)	31
FaeI	CATG	3 cut(s)	199, 379, 450
FalI	AAGNNNNNCTT	2 cut(s)	406, 438
FatI	CATG	3 cut(s)	195, 375, 446
FblI	GTMKAC	2 cut(s)	470, 582
Fnu4HI	GCNGC	4 cut(s)	18, 21, 54, 84
Fsp4HI	GCNGC	4 cut(s)	18, 21, 54, 84
GluI	GCNGC	4 cut(s)	18, 21, 54, 84
GsaI	CCCAGC	1 cut(s)	240
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	199, 379, 450
HincII	GTYRAC	2 cut(s)	337, 583
HindII	GTYRAC	2 cut(s)	337, 583
HinfI	GANTC	3 cut(s)	179, 385, 571
HphI	GGTGA	1 cut(s)	296
Hpy166II	GTNNAC	3 cut(s)	337, 471, 583
Hpy188I	TCNGA	3 cut(s)	159, 216, 223
Hpy188III	TCNNGA	4 cut(s)	119, 376, 437, 508
Hpy8I	GTNNAC	3 cut(s)	337, 471, 583
Hpy99I	CGWCG	1 cut(s)	611
HpyCH4III	ACNGT	2 cut(s)	92, 557
HpyCH4V	TGCA	2 cut(s)	110, 247
HpyF3I	CTNAG	1 cut(s)	213
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	199, 379, 450
Kzo9I	GATC	4 cut(s)	47, 216, 372, 504
LpnPI	CCDG	4 cut(s)	132, 222, 267, 389
Lsp1109I	GCAGC	3 cut(s)	7, 40, 70
MaeIII	GTNAC	3 cut(s)	77, 418, 549
MalI	GATC	4 cut(s)	49, 218, 374, 506
MboI	GATC	4 cut(s)	47, 216, 372, 504
MboII	GAAGA	4 cut(s)	64, 154, 185, 370
MflI	RGATCY	2 cut(s)	47, 216
MluCI	AATT	2 cut(s)	68, 304
MnlI	CCTC	4 cut(s)	115, 291, 345, 372
MseI	TTAA	1 cut(s)	546
MspA1I	CMGCKG	1 cut(s)	17
NdeII	GATC	4 cut(s)	47, 216, 372, 504
NlaIII	CATG	3 cut(s)	199, 379, 450
NspI	RCATGY	1 cut(s)	450
PagI	TCATGA	1 cut(s)	375
PciI	ACATGT	1 cut(s)	446
PfeI	GAWTC	3 cut(s)	179, 385, 571
PkrI	GCNGC	4 cut(s)	19, 22, 55, 85
PscI	ACATGT	1 cut(s)	446
PspFI	CCCAGC	1 cut(s)	236
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	2 cut(s)	47, 216
SalI	GTCGAC	1 cut(s)	581
SaqAI	TTAA	1 cut(s)	546
SatI	GCNGC	4 cut(s)	18, 21, 54, 84
Sau3AI	GATC	4 cut(s)	47, 216, 372, 504
SetI	ASST	6 cut(s)	238, 280, 302, 346, 394, 408
Sse9I	AATT	2 cut(s)	68, 304
SsiI	CCGC	1 cut(s)	17
TaaI	ACNGT	2 cut(s)	92, 557
TaqI	TCGA	3 cut(s)	350, 507, 582
TasI	AATT	2 cut(s)	68, 304
TauI	GCSGC	1 cut(s)	20
TfiI	GAWTC	3 cut(s)	179, 385, 571
Tru1I	TTAA	1 cut(s)	546
Tru9I	TTAA	1 cut(s)	546
TseI	GCWGC	3 cut(s)	20, 53, 83
TspDTI	ATGAA	4 cut(s)	184, 192, 342, 456
TspGWI	ACGGA	3 cut(s)	60, 172, 488
XapI	RAATTY	2 cut(s)	68, 304
XceI	RCATGY	1 cut(s)	450
XmiI	GTMKAC	2 cut(s)	470, 582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.