Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009238

Physical Location & Seq

Genomic Coordinates Forward (+)

6409546 .. 6410819

Gene Structure 1274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g09550.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCTTCAAAAGCAGCGACCAAAGATATCATCACTCTGCGTGGCTCTGCCGCCATCGTCAGCGAGTTCTTCGGATATTCTGCAAACAGTATTCTGTACAATCGAGGAGTGTATCCTGAGGAAAGCTTTGTGAAGGTGAAGAAATATGGACTGCCAATGTTGCTTACTCAAGACGAGGGCCTCAAATCCTTTATTGCCAACCTAACTGCCCAGCTTTCTGAATGGCTGGAATCTGGCAAGTTACAGAGAGTTGTTCTGGTCATAATGAGCAAGGCCACCAATGAGGTTCTGGAGAGGTGGAACTTCAGCATTGAGACCGACAGAGAGGTCGTTGAGAAGGGCGTGTCGAGGGAAAAGAGTGACAAGGAAATCATGAGGGAGATTCAATCGATCATGAGACAGATTGCTTCGAGCATCACTTACTTGCCATGCCTTGATGAACCCTGTGTGTTTGATGTGTTGGCGTACACGGATAAAGATGTTGCAGTCCCATTCACTTGGATCGAGATCGATCCGAAACTGATTGCAAATCCAGAAATAGTGAAACTGCACTCCTTTGACACCAAGATTCACAAGGTTGACACTCTAGTGTCGTACAAGAACGACGAATGGGACGAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000775 GO:0000776 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005737 GO:0005819 GO:0005828 GO:0005856 GO:0005874 GO:0005876 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0009987 GO:0010369 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015630 GO:0022402 GO:0030071 GO:0031577 GO:0031967 GO:0031975 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04914 ko05166 map04110 map04111 map04113 map04114 map04914 map05166

Pfam Domains

Protein Families

HORMA

Protein Analysis

208

Amino Acids

23.59

Weight (kDa)

5.03

Isoelectric Point (pI)

33.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25980 AT3G25980 AT3G25980 AT3G25980
fragaria_vesca	FvH4_4g24620 FvH4_4g24620 FvH4_4g24620 FvH4_4g24620
malus_domestica	MD13G1109700.v1.1 MD16G1109600.v1.1
prunus_persica	Prupe.1G235300_v2.0.a1 Prupe.1G235600_v2.0.a1
pyrus_communis	pycom13g09550 pycom16g09320
rosa_chinensis	RchiOBHm_Chr4g0431671
rosa_laevigata	RLG00000006898
rosa_multiflora	Rmu_sc0005185.1_g000006 Rmu_sc0011757.1_g000004
rosa_roxburghii	Rroxscaffold_5G00373110
rosa_rugosa	Rorug04G0251700
rosa_samantha	Rh4DG310800
rosa_wichuraiana	Rw4G026740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	326
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	2 cut(s)	506, 509
AcuI	CTGAAG	1 cut(s)	289
AfaI	GTAC	3 cut(s)	98, 467, 596
AgsI	TTSAA	2 cut(s)	9, 386
AleI	CACNNNNGTG	1 cut(s)	587
AluBI	AGCT	2 cut(s)	126, 214
AluI	AGCT	2 cut(s)	126, 214
Alw26I	GTCTC	2 cut(s)	308, 391
AlwI	GGATC	2 cut(s)	506, 509
AoxI	GGCC	2 cut(s)	178, 273
ApeKI	GCWGC	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	178
AsuHPI	GGTGA	1 cut(s)	148
AxyI	CCTNAGG	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	1 cut(s)	62
BciVI	GTATCC	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	308, 391
BfaI	CTAG	1 cut(s)	587
BfuI	GTATCC	1 cut(s)	123
BisI	GCNGC	2 cut(s)	15, 51
BlsI	GCNGC	2 cut(s)	16, 52
BmgT120I	GGNCC	1 cut(s)	178
BmsI	GCATC	1 cut(s)	423
BpmI	CTGGAG	1 cut(s)	311
BpuEI	CTTGAG	1 cut(s)	153
Bsa29I	ATCGAT	2 cut(s)	389, 510
BsaBI	GATNNNNATC	1 cut(s)	506
BsaI	GGTCTC	1 cut(s)	308
Bse21I	CCTNAGG	1 cut(s)	117
Bse8I	GATNNNNATC	1 cut(s)	506
BseCI	ATCGAT	2 cut(s)	389, 510
BseJI	GATNNNNATC	1 cut(s)	506
BseMII	CTCAG	1 cut(s)	108
BseRI	GAGGAG	1 cut(s)	120
BseXI	GCAGC	1 cut(s)	26
BseYI	CCCAGC	1 cut(s)	210
BsgI	GTGCAG	1 cut(s)	533
BshFI	GGCC	2 cut(s)	180, 275
BshVI	ATCGAT	2 cut(s)	389, 510
BslFI	GGGAC	1 cut(s)	473
BsmAI	GTCTC	2 cut(s)	308, 391
BsmFI	GGGAC	1 cut(s)	473
BsnI	GGCC	2 cut(s)	180, 275
Bso31I	GGTCTC	1 cut(s)	308
Bsp1407I	TGTACA	1 cut(s)	96
Bsp143I	GATC	4 cut(s)	390, 501, 507, 511
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	2 cut(s)	180, 275
BspCNI	CTCAG	1 cut(s)	109
BspDI	ATCGAT	2 cut(s)	389, 510
BspHI	TCATGA	2 cut(s)	372, 393
BspPI	GGATC	2 cut(s)	506, 509
BspTNI	GGTCTC	1 cut(s)	308
BsrGI	TGTACA	1 cut(s)	96
BssMI	GATC	4 cut(s)	390, 501, 507, 511
Bst4CI	ACNGT	1 cut(s)	89
BstAUI	TGTACA	1 cut(s)	96
BstDEI	CTNAG	1 cut(s)	117
BstKTI	GATC	4 cut(s)	393, 504, 510, 514
BstMAI	GTCTC	2 cut(s)	308, 391
BstMBI	GATC	4 cut(s)	390, 501, 507, 511
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 160
BstV1I	GCAGC	1 cut(s)	26
BstXI	CCANNNNNNTGG	1 cut(s)	498
Bsu15I	ATCGAT	2 cut(s)	389, 510
Bsu36I	CCTNAGG	1 cut(s)	117
BsuI	GTATCC	1 cut(s)	123
BsuRI	GGCC	2 cut(s)	180, 275
BsuTUI	ATCGAT	2 cut(s)	389, 510
CciI	TCATGA	2 cut(s)	372, 393
Cfr13I	GGNCC	1 cut(s)	178
ClaI	ATCGAT	2 cut(s)	389, 510
Csp6I	GTAC	3 cut(s)	97, 466, 595
CviAII	CATG	3 cut(s)	373, 394, 429
CviJI	RGCY	7 cut(s)	5, 45, 126, 180, 214, 226, 275
CviKI_1	RGCY	7 cut(s)	5, 45, 126, 180, 214, 226, 275
CviQI	GTAC	3 cut(s)	97, 466, 595
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	4 cut(s)	392, 503, 509, 513
DpnII	GATC	4 cut(s)	390, 501, 507, 511
DrdI	GACNNNNNNGTC	1 cut(s)	326
DseDI	GACNNNNNNGTC	1 cut(s)	326
Eco31I	GGTCTC	1 cut(s)	308
Eco32I	GATATC	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	289
Eco81I	CCTNAGG	1 cut(s)	117
EcoO109I	RGGNCCY	1 cut(s)	178
EcoRV	GATATC	1 cut(s)	28
FaeI	CATG	3 cut(s)	376, 397, 432
FaiI	YATR	5 cut(s)	147, 263, 374, 395, 430
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	3 cut(s)	372, 393, 428
Fnu4HI	GCNGC	2 cut(s)	15, 51
Fsp4HI	GCNGC	2 cut(s)	15, 51
FspBI	CTAG	1 cut(s)	587
GluI	GCNGC	2 cut(s)	15, 51
GsaI	CCCAGC	1 cut(s)	214
GsuI	CTGGAG	1 cut(s)	311
HaeIII	GGCC	2 cut(s)	180, 275
Hin1II	CATG	3 cut(s)	376, 397, 432
HincII	GTYRAC	1 cut(s)	580
HindII	GTYRAC	1 cut(s)	580
HindIII	AAGCTT	1 cut(s)	124
HinfI	GANTC	3 cut(s)	230, 382, 568
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	2 cut(s)	468, 580
Hpy188I	TCNGA	3 cut(s)	74, 220, 516
Hpy188III	TCNNGA	7 cut(s)	116, 170, 290, 373, 394, 505, 533
Hpy8I	GTNNAC	2 cut(s)	468, 580
Hpy99I	CGWCG	1 cut(s)	608
HpyAV	CCTTC	2 cut(s)	127, 331
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4V	TGCA	4 cut(s)	83, 485, 527, 550
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 160
HpyF3I	CTNAG	1 cut(s)	117
Hsp92II	CATG	3 cut(s)	376, 397, 432
Kzo9I	GATC	4 cut(s)	390, 501, 507, 511
LpnPI	CCDG	8 cut(s)	129, 212, 219, 224, 242, 275, 457, 546
Lsp1109I	GCAGC	1 cut(s)	26
LweI	GCATC	1 cut(s)	423
MaeI	CTAG	1 cut(s)	587
MaeIII	GTNAC	2 cut(s)	240, 359
MalI	GATC	4 cut(s)	392, 503, 509, 513
MboI	GATC	4 cut(s)	390, 501, 507, 511
MboII	GAAGA	2 cut(s)	61, 151
MnlI	CCTC	9 cut(s)	98, 112, 169, 191, 277, 288, 319, 342, 369
MslI	CAYNNNNRTG	1 cut(s)	587
MwoI	GCNNNNNNNGC	2 cut(s)	11, 160
NdeII	GATC	4 cut(s)	390, 501, 507, 511
NlaIII	CATG	3 cut(s)	376, 397, 432
NmuCI	GTSAC	1 cut(s)	359
OliI	CACNNNNGTG	1 cut(s)	587
PagI	TCATGA	2 cut(s)	372, 393
PcsI	WCGNNNNNNNCGW	1 cut(s)	612
PfeI	GAWTC	3 cut(s)	230, 382, 568
PkrI	GCNGC	2 cut(s)	16, 52
PspFI	CCCAGC	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	178
RsaI	GTAC	3 cut(s)	98, 467, 596
RsaNI	GTAC	3 cut(s)	97, 466, 595
RseI	CAYNNNNRTG	1 cut(s)	587
SatI	GCNGC	2 cut(s)	15, 51
Sau3AI	GATC	4 cut(s)	390, 501, 507, 511
Sau96I	GGNCC	1 cut(s)	178
SetI	ASST	8 cut(s)	128, 138, 204, 216, 288, 299, 330, 579
SfaNI	GCATC	1 cut(s)	423
SmiMI	CAYNNNNRTG	1 cut(s)	587
SmlI	CTYRAG	1 cut(s)	168
SmoI	CTYRAG	1 cut(s)	168
SsiI	CCGC	1 cut(s)	51
SspMI	CTAG	1 cut(s)	587
TaaI	ACNGT	1 cut(s)	89
TaqI	TCGA	6 cut(s)	103, 347, 389, 410, 504, 510
TaqII	GACCGA	1 cut(s)	332
TatI	WGTACW	1 cut(s)	96
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	3 cut(s)	230, 382, 568
TseFI	GTSAC	1 cut(s)	359
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	1 cut(s)	453
TspGWI	ACGGA	1 cut(s)	485
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XspI	CTAG	1 cut(s)	587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.