Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0009238

Physical Location & Seq

Genomic Coordinates Forward (+)

7705587 .. 7707533

Gene Structure 1947 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1109600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCTTCAAAAACAGCGACCAAAGACATCATCACTCTGCGTGGCTCCGCCGCCATTGTCAGCGAGTTCTTCGGATATTCGGCAAACAGCATTCTGTACAATCGAGGAGTGTATCCTGAAGAAAGTTTTGTGAAGGTGAAGAAATATGGATTGCCAATGTTGCTTACGCAAGACGAGGGCCTCAAATCCTTCATTGCCAACATAACCGCTCAGCTTTCTGAATGGCTGGAATCTGGAAAGTTGCAAAGAGTTGTTCTTGTTATAATGAGCAAGGCCACCAATGAGGTTCTTGAGAGGTGGAACTTCAGCATTGAGACTGATAGCGAGGTCGTCGAGCAGGGCGTGTCGAGGGAAAAGAGTGACAAGGAAATCATGAGGGAGATTCAGGCAATCATGAGGCAGATTGCTTCGAGCATCACTTACTTGCCATGCCTTGATGAACCCTGCGTGTTTGATGTGTTGGCATACACGGATAAAGATGTTGCAGTCCCATTCACTTGGATCGAGAGTGATCCGAAACTGATTACAAATCCAGAAATAGTGAAACTGCATTCCTTTGACACCAAGATTCACAAGGTTGACACTCTAGTGTCGTACAAGAACGACGAATGGGACGAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000775 GO:0000776 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005737 GO:0005819 GO:0005828 GO:0005856 GO:0005874 GO:0005876 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0009987 GO:0010369 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015630 GO:0022402 GO:0030071 GO:0031577 GO:0031967 GO:0031975 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04914 ko05166 map04110 map04111 map04113 map04114 map04914 map05166

Pfam Domains

Protein Families

HORMA

Protein Analysis

208

Amino Acids

23.54

Weight (kDa)

4.86

Isoelectric Point (pI)

36.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HORMA	PF02301	16 - 191	3.9e-22	HORMA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25980 AT3G25980 AT3G25980 AT3G25980
fragaria_vesca	FvH4_4g24620 FvH4_4g24620 FvH4_4g24620 FvH4_4g24620
malus_domestica	MD13G1109700.v1.1 MD16G1109600.v1.1
prunus_persica	Prupe.1G235300_v2.0.a1 Prupe.1G235600_v2.0.a1
pyrus_communis	pycom13g09550 pycom16g09320
rosa_chinensis	RchiOBHm_Chr4g0431671
rosa_laevigata	RLG00000006898
rosa_multiflora	Rmu_sc0005185.1_g000006 Rmu_sc0011757.1_g000004
rosa_roxburghii	Rroxscaffold_5G00373110
rosa_rugosa	Rorug04G0251700
rosa_samantha	Rh4DG310800
rosa_wichuraiana	Rw4G026740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	263
AccBSI	CCGCTC	1 cut(s)	209
AciI	CCGC	3 cut(s)	48, 51, 207
AclWI	GGATC	2 cut(s)	506, 509
AcuI	CTGAAG	2 cut(s)	138, 289
AfaI	GTAC	2 cut(s)	98, 596
AgsI	TTSAA	1 cut(s)	9
AleI	CACNNNNGTG	1 cut(s)	587
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	2 cut(s)	506, 509
AoxI	GGCC	2 cut(s)	178, 273
AspS9I	GGNCC	1 cut(s)	178
AsuHPI	GGTGA	1 cut(s)	148
BciVI	GTATCC	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	1 cut(s)	587
BfuI	GTATCC	1 cut(s)	123
BisI	GCNGC	1 cut(s)	51
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	1 cut(s)	46
BmsI	GCATC	1 cut(s)	423
Bpu1102I	GCTNAGC	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	311
Bse3DI	GCAATG	1 cut(s)	192
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	1 cut(s)	224
BseRI	GAGGAG	1 cut(s)	120
BshFI	GGCC	2 cut(s)	180, 275
BslFI	GGGAC	1 cut(s)	473
BsmAI	GTCTC	1 cut(s)	308
BsmFI	GGGAC	1 cut(s)	473
BsmI	GAATGC	2 cut(s)	90, 550
BsnI	GGCC	2 cut(s)	180, 275
Bsp1407I	TGTACA	1 cut(s)	96
Bsp143I	GATC	2 cut(s)	501, 511
Bsp1720I	GCTNAGC	1 cut(s)	210
BspACI	CCGC	3 cut(s)	48, 51, 207
BspANI	GGCC	2 cut(s)	180, 275
BspCNI	CTCAG	1 cut(s)	223
BspHI	TCATGA	2 cut(s)	372, 393
BspLI	GGNNCC	1 cut(s)	46
BspPI	GGATC	2 cut(s)	506, 509
BsrBI	CCGCTC	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	192
BsrGI	TGTACA	1 cut(s)	96
BssMI	GATC	2 cut(s)	501, 511
BstAUI	TGTACA	1 cut(s)	96
BstDEI	CTNAG	1 cut(s)	210
BstKTI	GATC	2 cut(s)	504, 514
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	2 cut(s)	501, 511
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstXI	CCANNNNNNTGG	1 cut(s)	498
BsuI	GTATCC	1 cut(s)	123
BsuRI	GGCC	2 cut(s)	180, 275
CciI	TCATGA	2 cut(s)	372, 393
Cfr13I	GGNCC	1 cut(s)	178
Csp6I	GTAC	2 cut(s)	97, 595
CviAII	CATG	3 cut(s)	373, 394, 429
CviJI	RGCY	6 cut(s)	5, 45, 180, 214, 226, 275
CviKI_1	RGCY	6 cut(s)	5, 45, 180, 214, 226, 275
CviQI	GTAC	2 cut(s)	97, 595
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	2 cut(s)	503, 513
DpnII	GATC	2 cut(s)	501, 511
EciI	GGCGGA	1 cut(s)	37
Eco57I	CTGAAG	2 cut(s)	138, 289
EcoO109I	RGGNCCY	1 cut(s)	178
FaeI	CATG	3 cut(s)	376, 397, 432
FaiI	YATR	7 cut(s)	147, 203, 263, 374, 395, 430, 466
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	3 cut(s)	372, 393, 428
Fnu4HI	GCNGC	1 cut(s)	51
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	1 cut(s)	587
GluI	GCNGC	1 cut(s)	51
HaeIII	GGCC	2 cut(s)	180, 275
Hin1II	CATG	3 cut(s)	376, 397, 432
HincII	GTYRAC	1 cut(s)	580
HindII	GTYRAC	1 cut(s)	580
HinfI	GANTC	3 cut(s)	230, 382, 568
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	1 cut(s)	580
Hpy188I	TCNGA	3 cut(s)	74, 220, 516
Hpy188III	TCNNGA	7 cut(s)	116, 234, 290, 373, 394, 505, 533
Hpy8I	GTNNAC	1 cut(s)	580
Hpy99I	CGWCG	2 cut(s)	335, 608
HpyAV	CCTTC	2 cut(s)	127, 199
HpyCH4V	TGCA	3 cut(s)	244, 485, 550
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpyF3I	CTNAG	1 cut(s)	210
Hsp92II	CATG	3 cut(s)	376, 397, 432
Kzo9I	GATC	2 cut(s)	501, 511
LmnI	GCTCC	1 cut(s)	50
LpnPI	CCDG	7 cut(s)	129, 212, 219, 323, 371, 457, 546
LweI	GCATC	1 cut(s)	423
MaeI	CTAG	1 cut(s)	587
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	2 cut(s)	503, 513
MbiI	CCGCTC	1 cut(s)	209
MboI	GATC	2 cut(s)	501, 511
MboII	GAAGA	3 cut(s)	61, 131, 151
MnlI	CCTC	9 cut(s)	98, 169, 191, 277, 288, 319, 342, 369, 390
MslI	CAYNNNNRTG	1 cut(s)	587
Mva1269I	GAATGC	2 cut(s)	90, 550
MwoI	GCNNNNNNNGC	1 cut(s)	160
NdeII	GATC	2 cut(s)	501, 511
NlaIII	CATG	3 cut(s)	376, 397, 432
NlaIV	GGNNCC	1 cut(s)	46
NmuCI	GTSAC	1 cut(s)	359
OliI	CACNNNNGTG	1 cut(s)	587
PagI	TCATGA	2 cut(s)	372, 393
PcsI	WCGNNNNNNNCGW	2 cut(s)	339, 612
PctI	GAATGC	2 cut(s)	90, 550
PfeI	GAWTC	3 cut(s)	230, 382, 568
PkrI	GCNGC	1 cut(s)	52
PsiI	TTATAA	1 cut(s)	263
PspN4I	GGNNCC	1 cut(s)	46
PspPI	GGNCC	1 cut(s)	178
RsaI	GTAC	2 cut(s)	98, 596
RsaNI	GTAC	2 cut(s)	97, 595
RseI	CAYNNNNRTG	1 cut(s)	587
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	2 cut(s)	501, 511
Sau96I	GGNCC	1 cut(s)	178
SetI	ASST	6 cut(s)	138, 216, 288, 299, 330, 579
SfaNI	GCATC	1 cut(s)	423
SmiMI	CAYNNNNRTG	1 cut(s)	587
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SsiI	CCGC	3 cut(s)	48, 51, 207
SspMI	CTAG	1 cut(s)	587
TaqI	TCGA	5 cut(s)	103, 333, 347, 410, 504
TatI	WGTACW	1 cut(s)	96
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	3 cut(s)	230, 382, 568
TseFI	GTSAC	1 cut(s)	359
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	2 cut(s)	181, 453
TspGWI	ACGGA	1 cut(s)	485
XspI	CTAG	1 cut(s)	587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.