Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009238

Physical Location & Seq

Genomic Coordinates Reverse (-)

26711635 .. 26713471

Gene Structure 1837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g24620.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCTTCATCAAGAACCGCAACCAAGGACATCATCACTCTGCGTGGCTCCGCCGCCATTGTCAGCGAGTTTTTTGGCTATTCAGCGAACAGCATTTTGTACAATCGAGGAGTGTATCCTGAAGAGAGTTTTGTCAAGGTCAAGAAATATGGGCTGCCTATGTTGCTCACCCAGGATGAGGGTCTTAAATCTTTTCTGGCCAATCTGACGTCCCAGCTTTCTGAATGGCTGGAGTCTGGCAAGTTACAGAGGGTTGTTCTGGTGATCATGAGCAAGGCTACTGGTGAGGTTCTAGAGAGGTGGAATTTTAGTATTGAGACCGACAGTGAGGTTGTCGAGAAGGGTGTTTCAAGGGAAAAGAGTGACAAGGAGATTATGAGGGAGATTCAAGCAATCATGAGGCAGATTGCTTCTAGCATTACTTACCTGCCATGCCTTGATGAACCCTGTGTTTTTGATGTTCTGGCATACACTGATAAGGATCTTCAAGTCCCATTCACTTGGGTGGAGAGTGATCCCAAACTGATAGCCAATCCACAAATGGTGAAACTGCATTCCTTTGACACCAAGATTCACAAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000775 GO:0000776 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005737 GO:0005819 GO:0005828 GO:0005856 GO:0005874 GO:0005876 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0009987 GO:0010369 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015630 GO:0022402 GO:0030071 GO:0031577 GO:0031967 GO:0031975 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04914 ko05166 map04110 map04111 map04113 map04114 map04914 map05166

Pfam Domains

Protein Families

HORMA

Protein Analysis

195

Amino Acids

21.97

Weight (kDa)

5.38

Isoelectric Point (pI)

38.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HORMA	PF02301	17 - 192	1.4e-22	HORMA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25980 AT3G25980 AT3G25980 AT3G25980
fragaria_vesca	FvH4_4g24620 FvH4_4g24620 FvH4_4g24620 FvH4_4g24620
malus_domestica	MD13G1109700.v1.1 MD16G1109600.v1.1
prunus_persica	Prupe.1G235300_v2.0.a1 Prupe.1G235600_v2.0.a1
pyrus_communis	pycom13g09550 pycom16g09320
rosa_chinensis	RchiOBHm_Chr4g0431671
rosa_laevigata	RLG00000006898
rosa_multiflora	Rmu_sc0005185.1_g000006 Rmu_sc0011757.1_g000004
rosa_roxburghii	Rroxscaffold_5G00373110
rosa_rugosa	Rorug04G0251700
rosa_samantha	Rh4DG310800
rosa_wichuraiana	Rw4G026740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	212
Acc36I	ACCTGC	1 cut(s)	435
AciI	CCGC	3 cut(s)	18, 51, 54
AclWI	GGATC	2 cut(s)	489, 509
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	304
AcuI	CTGAAG	1 cut(s)	141
AcyI	GRCGYC	1 cut(s)	209
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	1 cut(s)	178
AgsI	TTSAA	3 cut(s)	351, 389, 488
AjnI	CCWGG	1 cut(s)	171
AleI	CACNNNNGTG	1 cut(s)	503
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	2 cut(s)	489, 509
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	1 cut(s)	154
ApoI	RAATTY	1 cut(s)	304
AsuHPI	GGTGA	4 cut(s)	160, 274, 296, 556
BalI	TGGCCA	1 cut(s)	200
BbvI	GCAGC	1 cut(s)	141
BciT130I	CCWGG	1 cut(s)	173
BciVI	GTATCC	1 cut(s)	126
BclI	TGATCA	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	2 cut(s)	293, 414
BfuAI	ACCTGC	1 cut(s)	435
BfuI	GTATCC	1 cut(s)	126
BisI	GCNGC	2 cut(s)	54, 155
BlsI	GCNGC	2 cut(s)	55, 156
Bme1390I	CCNGG	1 cut(s)	173
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	173
BpmI	CTGGAG	1 cut(s)	251
BsaBI	GATNNNNATC	1 cut(s)	480
BsaHI	GRCGYC	1 cut(s)	209
BsaI	GGTCTC	1 cut(s)	311
BsaJI	CCNNGG	2 cut(s)	24, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse1I	ACTGG	1 cut(s)	286
Bse8I	GATNNNNATC	1 cut(s)	480
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	2 cut(s)	24, 171
BseGI	GGATG	1 cut(s)	181
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseNI	ACTGG	1 cut(s)	286
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	141
BseYI	CCCAGC	1 cut(s)	213
BshFI	GGCC	1 cut(s)	200
BslFI	GGGAC	2 cut(s)	196, 476
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmAI	GTCTC	1 cut(s)	311
BsmFI	GGGAC	2 cut(s)	196, 476
BsmI	GAATGC	1 cut(s)	553
BsnI	GGCC	1 cut(s)	200
Bso31I	GGTCTC	1 cut(s)	311
Bsp1407I	TGTACA	1 cut(s)	99
Bsp143I	GATC	3 cut(s)	264, 481, 514
BspACI	CCGC	3 cut(s)	18, 51, 54
BspANI	GGCC	1 cut(s)	200
BspHI	TCATGA	2 cut(s)	267, 396
BspLI	GGNNCC	1 cut(s)	49
BspMI	ACCTGC	1 cut(s)	435
BspPI	GGATC	2 cut(s)	489, 509
BspTNI	GGTCTC	1 cut(s)	311
BsrGI	TGTACA	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	286
BssECI	CCNNGG	2 cut(s)	24, 171
BssMI	GATC	3 cut(s)	264, 481, 514
BssNI	GRCGYC	1 cut(s)	209
BssT1I	CCWWGG	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	326
Bst6I	CTCTTC	1 cut(s)	117
BstACI	GRCGYC	1 cut(s)	209
BstAUI	TGTACA	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	181
BstKTI	GATC	3 cut(s)	267, 484, 517
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	3 cut(s)	264, 481, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	171
BstV1I	GCAGC	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	481
BstXI	CCANNNNNNTGG	1 cut(s)	501
BstYI	RGATCY	1 cut(s)	481
BsuI	GTATCC	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	200
BtsCI	GGATG	1 cut(s)	181
BtsIMutI	CAGTG	2 cut(s)	331, 471
BveI	ACCTGC	1 cut(s)	435
CciI	TCATGA	2 cut(s)	267, 396
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	3 cut(s)	268, 397, 432
CviJI	RGCY	9 cut(s)	5, 48, 78, 154, 200, 217, 229, 278, 530
CviKI_1	RGCY	9 cut(s)	5, 48, 78, 154, 200, 217, 229, 278, 530
CviQI	GTAC	1 cut(s)	100
DpnI	GATC	3 cut(s)	266, 483, 516
DpnII	GATC	3 cut(s)	264, 481, 514
EaeI	YGGCCR	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
EciI	GGCGGA	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	24
Eco31I	GGTCTC	1 cut(s)	311
Eco57I	CTGAAG	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	3 cut(s)	271, 400, 435
FaiI	YATR	7 cut(s)	150, 161, 269, 377, 398, 433, 469
FaqI	GGGAC	2 cut(s)	196, 476
FatI	CATG	3 cut(s)	267, 396, 431
FbaI	TGATCA	1 cut(s)	264
Fnu4HI	GCNGC	2 cut(s)	54, 155
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	2 cut(s)	54, 155
FspBI	CTAG	2 cut(s)	293, 414
GluI	GCNGC	2 cut(s)	54, 155
GsaI	CCCAGC	1 cut(s)	217
GsuI	CTGGAG	1 cut(s)	251
HaeIII	GGCC	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	209
Hin1II	CATG	3 cut(s)	271, 400, 435
HinfI	GANTC	3 cut(s)	233, 385, 571
HphI	GGTGA	4 cut(s)	160, 274, 296, 556
Hpy188I	TCNGA	2 cut(s)	207, 223
Hpy188III	TCNNGA	7 cut(s)	12, 119, 142, 268, 293, 337, 397
HpyAV	CCTTC	1 cut(s)	334
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4IV	ACGT	1 cut(s)	209
HpyCH4V	TGCA	1 cut(s)	553
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpySE526I	ACGT	1 cut(s)	209
Hsp92I	GRCGYC	1 cut(s)	209
Hsp92II	CATG	3 cut(s)	271, 400, 435
Ksp22I	TGATCA	1 cut(s)	264
Kzo9I	GATC	3 cut(s)	264, 481, 514
LmnI	GCTCC	1 cut(s)	53
Lsp1109I	GCAGC	1 cut(s)	141
MaeI	CTAG	2 cut(s)	293, 414
MaeII	ACGT	1 cut(s)	209
MaeIII	GTNAC	2 cut(s)	243, 362
MalI	GATC	3 cut(s)	266, 483, 516
MboI	GATC	3 cut(s)	264, 481, 514
MboII	GAAGA	2 cut(s)	134, 476
MflI	RGATCY	1 cut(s)	481
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	1 cut(s)	304
MluNI	TGGCCA	1 cut(s)	200
MlyI	GAGTC	1 cut(s)	242
MnlI	CCTC	8 cut(s)	101, 172, 243, 280, 291, 322, 372, 393
Mox20I	TGGCCA	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	1 cut(s)	186
MslI	CAYNNNNRTG	1 cut(s)	503
Msp20I	TGGCCA	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	173
Mva1269I	GAATGC	1 cut(s)	553
MvaI	CCWGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	163
NdeII	GATC	3 cut(s)	264, 481, 514
NlaIII	CATG	3 cut(s)	271, 400, 435
NlaIV	GGNNCC	1 cut(s)	49
NmuCI	GTSAC	1 cut(s)	362
OliI	CACNNNNGTG	1 cut(s)	503
PagI	TCATGA	2 cut(s)	267, 396
PctI	GAATGC	1 cut(s)	553
PfeI	GAWTC	2 cut(s)	385, 571
PkrI	GCNGC	2 cut(s)	55, 156
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	171
PspFI	CCCAGC	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	481
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
RseI	CAYNNNNRTG	1 cut(s)	503
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	2 cut(s)	54, 155
Sau3AI	GATC	3 cut(s)	264, 481, 514
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	1 cut(s)	173
SetI	ASST	7 cut(s)	141, 212, 219, 291, 302, 333, 429
SmiMI	CAYNNNNRTG	1 cut(s)	503
Sse9I	AATT	1 cut(s)	304
SsiI	CCGC	3 cut(s)	18, 51, 54
SspMI	CTAG	2 cut(s)	293, 414
StyD4I	CCNGG	1 cut(s)	171
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	326
TaiI	ACGT	1 cut(s)	212
TaqI	TCGA	2 cut(s)	106, 336
TaqII	GACCGA	1 cut(s)	335
TasI	AATT	1 cut(s)	304
TatI	WGTACW	1 cut(s)	99
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	2 cut(s)	385, 571
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	2 cut(s)	331, 478
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	1 cut(s)	154
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	1 cut(s)	456
TspRI	CASTG	2 cut(s)	331, 478
XapI	RAATTY	1 cut(s)	304
XbaI	TCTAGA	1 cut(s)	292
XcmI	CCANNNNNNNNNTGG	1 cut(s)	538
XspI	CTAG	2 cut(s)	293, 414
ZraI	GACGTC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.