Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011757.1

Orthogroup ID

OG0009238

Physical Location & Seq

Genomic Coordinates Forward (+)

15922 .. 17204

Gene Structure 1283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011757.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atggcttcatcaagaaccgcaaccaaggacatcatcactctgcgtggctccgctgccattgtcagcgagttttttggagtgtatcctgaagaaagttttgtaaaggtcaagaaatatgggctgcctatgttgctcactcaggatgagggtctcaaatcttttattgccaatctaacttcccagctttctgaatggctggaatctggcaagttacagaggattgttctggtgatcatgagtaaggccactaatgaggttctagagaggtggaacttcagcatcgagaccgacagtgaggtcgtcgagaagggtgtttcgagggaaaagagtgacaaggagattatgagggagattcaagcaatcatgaggcagattgcttctagcattacttatctgccatgccttgatgaaccctgtgttttcgatgttttggcatacactgataaggatgttcaagtcccattcacttgggtggaaagtgatcccaaactgatagacaatccacaaatggtgaagctgcattcctttgacaccaagattcacaaggtcaacactctggtatcctacaagaacgatgaatgggatgaggagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000775 GO:0000776 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005737 GO:0005819 GO:0005828 GO:0005856 GO:0005874 GO:0005876 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0009987 GO:0010369 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015630 GO:0022402 GO:0030071 GO:0031577 GO:0031967 GO:0031975 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04914 ko05166 map04110 map04111 map04113 map04114 map04914 map05166

Pfam Domains

Protein Families

HORMA

Protein Analysis

197

Amino Acids

22.52

Weight (kDa)

4.89

Isoelectric Point (pI)

35.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25980 AT3G25980 AT3G25980 AT3G25980
fragaria_vesca	FvH4_4g24620 FvH4_4g24620 FvH4_4g24620 FvH4_4g24620
malus_domestica	MD13G1109700.v1.1 MD16G1109600.v1.1
prunus_persica	Prupe.1G235300_v2.0.a1 Prupe.1G235600_v2.0.a1
pyrus_communis	pycom13g09550 pycom16g09320
rosa_chinensis	RchiOBHm_Chr4g0431671
rosa_laevigata	RLG00000006898
rosa_multiflora	Rmu_sc0005185.1_g000006 Rmu_sc0011757.1_g000004
rosa_roxburghii	Rroxscaffold_5G00373110
rosa_rugosa	Rorug04G0251700
rosa_samantha	Rh4DG310800
rosa_wichuraiana	Rw4G026740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	296
AciI	CCGC	2 cut(s)	18, 51
AclWI	GGATC	1 cut(s)	476
AcuI	CTGAAG	2 cut(s)	108, 259
AgsI	TTSAA	2 cut(s)	356, 455
AleI	CACNNNNGTG	1 cut(s)	470
AluBI	AGCT	2 cut(s)	184, 517
AluI	AGCT	2 cut(s)	184, 517
Alw26I	GTCTC	2 cut(s)	155, 278
AlwI	GGATC	1 cut(s)	476
AoxI	GGCC	1 cut(s)	243
ApeKI	GCWGC	3 cut(s)	53, 121, 517
AsuHPI	GGTGA	2 cut(s)	241, 523
BaeI	ACNNNNGTAYC	2 cut(s)	543, 576
BbvI	GCAGC	3 cut(s)	40, 108, 504
BciVI	GTATCC	2 cut(s)	93, 571
BclI	TGATCA	1 cut(s)	231
BcoDI	GTCTC	2 cut(s)	155, 278
BfaI	CTAG	2 cut(s)	260, 381
BfuI	GTATCC	2 cut(s)	93, 571
BisI	GCNGC	3 cut(s)	54, 122, 518
BlsI	GCNGC	3 cut(s)	55, 123, 519
BmiI	GGNNCC	1 cut(s)	49
BmsI	GCATC	1 cut(s)	288
BsaI	GGTCTC	2 cut(s)	155, 278
BsaJI	CCNNGG	1 cut(s)	24
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	3 cut(s)	148, 454, 589
BseMII	CTCAG	1 cut(s)	152
BseXI	GCAGC	3 cut(s)	40, 108, 504
BseYI	CCCAGC	1 cut(s)	180
BshFI	GGCC	1 cut(s)	245
BslFI	GGGAC	1 cut(s)	443
BsmAI	GTCTC	2 cut(s)	155, 278
BsmFI	GGGAC	1 cut(s)	443
BsmI	GAATGC	1 cut(s)	520
BsnI	GGCC	1 cut(s)	245
Bso31I	GGTCTC	2 cut(s)	155, 278
Bsp143I	GATC	2 cut(s)	231, 481
BspACI	CCGC	2 cut(s)	18, 51
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	1 cut(s)	151
BspHI	TCATGA	2 cut(s)	234, 363
BspLI	GGNNCC	1 cut(s)	49
BspPI	GGATC	1 cut(s)	476
BspTNI	GGTCTC	2 cut(s)	155, 278
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	2 cut(s)	231, 481
BssT1I	CCWWGG	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	293
BstDEI	CTNAG	1 cut(s)	138
BstF5I	GGATG	3 cut(s)	148, 454, 589
BstKTI	GATC	2 cut(s)	234, 484
BstMAI	GTCTC	2 cut(s)	155, 278
BstMBI	GATC	2 cut(s)	231, 481
BstMWI	GCNNNNNNNGC	1 cut(s)	130
BstV1I	GCAGC	3 cut(s)	40, 108, 504
BstXI	CCANNNNNNTGG	1 cut(s)	468
BsuI	GTATCC	2 cut(s)	93, 571
BsuRI	GGCC	1 cut(s)	245
BtsCI	GGATG	3 cut(s)	148, 454, 589
BtsIMutI	CAGTG	2 cut(s)	298, 438
CciI	TCATGA	2 cut(s)	234, 363
CviAII	CATG	3 cut(s)	235, 364, 399
CviJI	RGCY	7 cut(s)	5, 48, 121, 184, 196, 245, 517
CviKI_1	RGCY	7 cut(s)	5, 48, 121, 184, 196, 245, 517
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	2 cut(s)	233, 483
DpnII	GATC	2 cut(s)	231, 481
DrdI	GACNNNNNNGTC	1 cut(s)	296
DseDI	GACNNNNNNGTC	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	24
Eco31I	GGTCTC	2 cut(s)	155, 278
Eco57I	CTGAAG	2 cut(s)	108, 259
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	3 cut(s)	238, 367, 402
FaiI	YATR	7 cut(s)	117, 128, 236, 344, 365, 400, 436
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	3 cut(s)	234, 363, 398
FbaI	TGATCA	1 cut(s)	231
Fnu4HI	GCNGC	3 cut(s)	54, 122, 518
FokI	GGATG	2 cut(s)	155, 461
Fsp4HI	GCNGC	3 cut(s)	54, 122, 518
FspBI	CTAG	2 cut(s)	260, 381
GluI	GCNGC	3 cut(s)	54, 122, 518
GsaI	CCCAGC	1 cut(s)	184
HaeIII	GGCC	1 cut(s)	245
Hin1II	CATG	3 cut(s)	238, 367, 402
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HinfI	GANTC	3 cut(s)	200, 352, 538
HphI	GGTGA	2 cut(s)	241, 523
Hpy166II	GTNNAC	1 cut(s)	550
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	9 cut(s)	12, 86, 109, 140, 235, 260, 283, 304, 364
Hpy8I	GTNNAC	1 cut(s)	550
Hpy99I	CGWCG	1 cut(s)	305
HpyAV	CCTTC	1 cut(s)	301
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4V	TGCA	1 cut(s)	520
HpyF10VI	GCNNNNNNNGC	1 cut(s)	130
HpyF3I	CTNAG	1 cut(s)	138
Hsp92II	CATG	3 cut(s)	238, 367, 402
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	2 cut(s)	231, 481
LmnI	GCTCC	1 cut(s)	53
LpnPI	CCDG	8 cut(s)	99, 125, 182, 189, 194, 212, 427, 542
Lsp1109I	GCAGC	3 cut(s)	40, 108, 504
LweI	GCATC	1 cut(s)	288
MaeI	CTAG	2 cut(s)	260, 381
MaeIII	GTNAC	2 cut(s)	210, 329
MalI	GATC	2 cut(s)	233, 483
MboI	GATC	2 cut(s)	231, 481
MboII	GAAGA	1 cut(s)	101
MnlI	CCTC	9 cut(s)	139, 210, 247, 258, 289, 312, 339, 360, 580
MslI	CAYNNNNRTG	1 cut(s)	470
MspA1I	CMGCKG	1 cut(s)	53
Mva1269I	GAATGC	1 cut(s)	520
MwoI	GCNNNNNNNGC	1 cut(s)	130
NdeII	GATC	2 cut(s)	231, 481
NlaIII	CATG	3 cut(s)	238, 367, 402
NlaIV	GGNNCC	1 cut(s)	49
NmuCI	GTSAC	1 cut(s)	329
OliI	CACNNNNGTG	1 cut(s)	470
PagI	TCATGA	2 cut(s)	234, 363
PctI	GAATGC	1 cut(s)	520
PfeI	GAWTC	3 cut(s)	200, 352, 538
PkrI	GCNGC	3 cut(s)	55, 123, 519
PspFI	CCCAGC	1 cut(s)	180
PspN4I	GGNNCC	1 cut(s)	49
RseI	CAYNNNNRTG	1 cut(s)	470
SatI	GCNGC	3 cut(s)	54, 122, 518
Sau3AI	GATC	2 cut(s)	231, 481
SetI	ASST	7 cut(s)	108, 186, 258, 269, 300, 519, 549
SfaNI	GCATC	1 cut(s)	288
SmiMI	CAYNNNNRTG	1 cut(s)	470
SsiI	CCGC	2 cut(s)	18, 51
SspMI	CTAG	2 cut(s)	260, 381
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	293
TaqI	TCGA	4 cut(s)	282, 303, 317, 423
TaqII	GACCGA	1 cut(s)	302
TfiI	GAWTC	3 cut(s)	200, 352, 538
TscAI	CASTG	2 cut(s)	298, 445
TseFI	GTSAC	1 cut(s)	329
TseI	GCWGC	3 cut(s)	53, 121, 517
Tsp45I	GTSAC	1 cut(s)	329
TspDTI	ATGAA	2 cut(s)	423, 591
TspRI	CASTG	2 cut(s)	298, 445
XbaI	TCTAGA	1 cut(s)	259
XspI	CTAG	2 cut(s)	260, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.