Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009238

Physical Location & Seq

Genomic Coordinates Reverse (-)

55852942 .. 55855620

Gene Structure 2679 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40031

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCTTCATCAAGAACCGCAACCAAGGACATCATCACTCTGCGTGGCTCCGCTGCCATTGTCAGCGAGTTTTTTGGCTATTCAGCGAACAGCATTTTGTACAATCGAGGAGTGTATCCTGAAGAAAGTTTTGTAAAGGTCAAGAAATATGGGCTGCCTATGTTGCTCACTCAGGATGAGGGTCTCAAATCTTTTATTGCCAATCTAACTTCCCAGCTTTCTGAATGGCTGGAATCTGGCAAGTTACAGAGGATTGTTCTGGTGATCATGAGTAAGGCCACTAATGAGGTTCTAGAGAGGTGGAACTTCAGCATCGAGACCGACAGTGAGGTCGTCGAGAAGGGTGTTTCGAGGGAAAAGAGTGACAAGGAGATTATGAGGGAGATTCAAGCAATCATGAGGCAGATTGCTTCTAGCATTACTTACCTGCCATGCCTTGATGAACCCTGTGTTTTTGATGTTTTGGCATACACTGATAAGGATGTTCAAGTCCCATTCACTTGGGTGGAAAGTGATCCCAAACTGATAGACAATCCACAAATGGTGAAGCTGCATTCCTTTGACACCAAGATTCACAAGGTCAACACTCTGGTATCCTACAAGAACGATGAATGGGATGAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000775 GO:0000776 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005737 GO:0005819 GO:0005828 GO:0005856 GO:0005874 GO:0005876 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0009987 GO:0010369 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015630 GO:0022402 GO:0030071 GO:0031577 GO:0031967 GO:0031975 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04914 ko05166 map04110 map04111 map04113 map04114 map04914 map05166

Pfam Domains

Protein Families

HORMA

Protein Analysis

208

Amino Acids

23.76

Weight (kDa)

4.97

Isoelectric Point (pI)

34.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HORMA	PF02301	17 - 192	4e-23	HORMA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25980 AT3G25980 AT3G25980 AT3G25980
fragaria_vesca	FvH4_4g24620 FvH4_4g24620 FvH4_4g24620 FvH4_4g24620
malus_domestica	MD13G1109700.v1.1 MD16G1109600.v1.1
prunus_persica	Prupe.1G235300_v2.0.a1 Prupe.1G235600_v2.0.a1
pyrus_communis	pycom13g09550 pycom16g09320
rosa_chinensis	RchiOBHm_Chr4g0431671
rosa_laevigata	RLG00000006898
rosa_multiflora	Rmu_sc0005185.1_g000006 Rmu_sc0011757.1_g000004
rosa_roxburghii	Rroxscaffold_5G00373110
rosa_rugosa	Rorug04G0251700
rosa_samantha	Rh4DG310800
rosa_wichuraiana	Rw4G026740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	329
Acc36I	ACCTGC	1 cut(s)	435
AciI	CCGC	2 cut(s)	18, 51
AclWI	GGATC	1 cut(s)	509
AcuI	CTGAAG	2 cut(s)	141, 292
AfaI	GTAC	1 cut(s)	101
AgsI	TTSAA	2 cut(s)	389, 488
AleI	CACNNNNGTG	1 cut(s)	503
AluBI	AGCT	2 cut(s)	217, 550
AluI	AGCT	2 cut(s)	217, 550
Alw26I	GTCTC	2 cut(s)	188, 311
AlwI	GGATC	1 cut(s)	509
AoxI	GGCC	1 cut(s)	276
ApeKI	GCWGC	3 cut(s)	53, 154, 550
AsuHPI	GGTGA	2 cut(s)	274, 556
BaeI	ACNNNNGTAYC	2 cut(s)	576, 609
BbvI	GCAGC	3 cut(s)	40, 141, 537
BciVI	GTATCC	2 cut(s)	126, 604
BclI	TGATCA	1 cut(s)	264
BcoDI	GTCTC	2 cut(s)	188, 311
BfaI	CTAG	2 cut(s)	293, 414
BfuAI	ACCTGC	1 cut(s)	435
BfuI	GTATCC	2 cut(s)	126, 604
BisI	GCNGC	3 cut(s)	54, 155, 551
BlsI	GCNGC	3 cut(s)	55, 156, 552
BmiI	GGNNCC	1 cut(s)	49
BmsI	GCATC	1 cut(s)	321
BsaI	GGTCTC	2 cut(s)	188, 311
BsaJI	CCNNGG	1 cut(s)	24
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	3 cut(s)	181, 487, 622
BseMII	CTCAG	1 cut(s)	185
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	3 cut(s)	40, 141, 537
BseYI	CCCAGC	1 cut(s)	213
BshFI	GGCC	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	476
BsmAI	GTCTC	2 cut(s)	188, 311
BsmFI	GGGAC	1 cut(s)	476
BsmI	GAATGC	1 cut(s)	553
BsnI	GGCC	1 cut(s)	278
Bso31I	GGTCTC	2 cut(s)	188, 311
Bsp1407I	TGTACA	1 cut(s)	99
Bsp143I	GATC	2 cut(s)	264, 514
BspACI	CCGC	2 cut(s)	18, 51
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	1 cut(s)	184
BspHI	TCATGA	2 cut(s)	267, 396
BspLI	GGNNCC	1 cut(s)	49
BspMI	ACCTGC	1 cut(s)	435
BspPI	GGATC	1 cut(s)	509
BspTNI	GGTCTC	2 cut(s)	188, 311
BsrGI	TGTACA	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	2 cut(s)	264, 514
BssT1I	CCWWGG	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	326
BstAUI	TGTACA	1 cut(s)	99
BstDEI	CTNAG	1 cut(s)	171
BstF5I	GGATG	3 cut(s)	181, 487, 622
BstKTI	GATC	2 cut(s)	267, 517
BstMAI	GTCTC	2 cut(s)	188, 311
BstMBI	GATC	2 cut(s)	264, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstV1I	GCAGC	3 cut(s)	40, 141, 537
BstXI	CCANNNNNNTGG	1 cut(s)	501
BsuI	GTATCC	2 cut(s)	126, 604
BsuRI	GGCC	1 cut(s)	278
BtsCI	GGATG	3 cut(s)	181, 487, 622
BtsIMutI	CAGTG	2 cut(s)	331, 471
BveI	ACCTGC	1 cut(s)	435
CciI	TCATGA	2 cut(s)	267, 396
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	3 cut(s)	268, 397, 432
CviJI	RGCY	8 cut(s)	5, 48, 78, 154, 217, 229, 278, 550
CviKI_1	RGCY	8 cut(s)	5, 48, 78, 154, 217, 229, 278, 550
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	2 cut(s)	266, 516
DpnII	GATC	2 cut(s)	264, 514
DrdI	GACNNNNNNGTC	1 cut(s)	329
DseDI	GACNNNNNNGTC	1 cut(s)	329
Eco130I	CCWWGG	1 cut(s)	24
Eco31I	GGTCTC	2 cut(s)	188, 311
Eco57I	CTGAAG	2 cut(s)	141, 292
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	3 cut(s)	271, 400, 435
FaiI	YATR	7 cut(s)	150, 161, 269, 377, 398, 433, 469
FaqI	GGGAC	1 cut(s)	476
FatI	CATG	3 cut(s)	267, 396, 431
FbaI	TGATCA	1 cut(s)	264
Fnu4HI	GCNGC	3 cut(s)	54, 155, 551
FokI	GGATG	2 cut(s)	188, 494
Fsp4HI	GCNGC	3 cut(s)	54, 155, 551
FspBI	CTAG	2 cut(s)	293, 414
GluI	GCNGC	3 cut(s)	54, 155, 551
GsaI	CCCAGC	1 cut(s)	217
HaeIII	GGCC	1 cut(s)	278
Hin1II	CATG	3 cut(s)	271, 400, 435
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HinfI	GANTC	3 cut(s)	233, 385, 571
HphI	GGTGA	2 cut(s)	274, 556
Hpy166II	GTNNAC	1 cut(s)	583
Hpy188I	TCNGA	1 cut(s)	223
Hpy188III	TCNNGA	9 cut(s)	12, 119, 142, 173, 268, 293, 316, 337, 397
Hpy8I	GTNNAC	1 cut(s)	583
Hpy99I	CGWCG	1 cut(s)	338
HpyAV	CCTTC	1 cut(s)	334
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4V	TGCA	1 cut(s)	553
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpyF3I	CTNAG	1 cut(s)	171
Hsp92II	CATG	3 cut(s)	271, 400, 435
Ksp22I	TGATCA	1 cut(s)	264
Kzo9I	GATC	2 cut(s)	264, 514
LmnI	GCTCC	1 cut(s)	53
LpnPI	CCDG	9 cut(s)	132, 158, 215, 222, 227, 245, 440, 460, 575
Lsp1109I	GCAGC	3 cut(s)	40, 141, 537
LweI	GCATC	1 cut(s)	321
MaeI	CTAG	2 cut(s)	293, 414
MaeIII	GTNAC	2 cut(s)	243, 362
MalI	GATC	2 cut(s)	266, 516
MboI	GATC	2 cut(s)	264, 514
MboII	GAAGA	1 cut(s)	134
MslI	CAYNNNNRTG	1 cut(s)	503
MspA1I	CMGCKG	1 cut(s)	53
Mva1269I	GAATGC	1 cut(s)	553
MwoI	GCNNNNNNNGC	1 cut(s)	163
NdeII	GATC	2 cut(s)	264, 514
NlaIII	CATG	3 cut(s)	271, 400, 435
NlaIV	GGNNCC	1 cut(s)	49
NmuCI	GTSAC	1 cut(s)	362
OliI	CACNNNNGTG	1 cut(s)	503
PagI	TCATGA	2 cut(s)	267, 396
PctI	GAATGC	1 cut(s)	553
PfeI	GAWTC	3 cut(s)	233, 385, 571
PkrI	GCNGC	3 cut(s)	55, 156, 552
PspFI	CCCAGC	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	49
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
RseI	CAYNNNNRTG	1 cut(s)	503
SatI	GCNGC	3 cut(s)	54, 155, 551
Sau3AI	GATC	2 cut(s)	264, 514
SetI	ASST	8 cut(s)	141, 219, 291, 302, 333, 429, 552, 582
SfaNI	GCATC	1 cut(s)	321
SmiMI	CAYNNNNRTG	1 cut(s)	503
SsiI	CCGC	2 cut(s)	18, 51
SspMI	CTAG	2 cut(s)	293, 414
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	326
TaqI	TCGA	4 cut(s)	106, 315, 336, 350
TaqII	GACCGA	1 cut(s)	335
TatI	WGTACW	1 cut(s)	99
TfiI	GAWTC	3 cut(s)	233, 385, 571
TscAI	CASTG	2 cut(s)	331, 478
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	3 cut(s)	53, 154, 550
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	2 cut(s)	456, 624
TspRI	CASTG	2 cut(s)	331, 478
XbaI	TCTAGA	1 cut(s)	292
XspI	CTAG	2 cut(s)	293, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.