Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009238

Physical Location & Seq

Genomic Coordinates Reverse (-)

24897691 .. 24899762

Gene Structure 2072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G235300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCTTCAAGAACTGCGACCAAAGACATTATCACTCTGCGTGGTTCAGCGGCTATCGTCAGCGAGTTCTTCGGATATTCAGCGAACAGTATTCTGTACAATCGAGGAGTGTATCCTGAAGAAAGCTTTGCAAAGGTGAAGAAATATGGGCTGCCCATGTTGCTTACTCAAGATGAAGGCCTCAAATCCTTCATCGCCAATCTAACTACTCAGCTTTCTGAATGGCTGGAATCTGGCAAGTTACAGAGAGTTGTTCTGGTCATACTGAGCAAGGCGACTAATGAGGTTCTAGAGAGGTGGAACTTCAGCATTGAGACTGACAATGAGGTCGTTGAGAAGGGGGAGTCGAGGCAAAAGAGTGACAAGGAAATCATGAGGGAGATTCAAGCAATCATGAGGCAGATTGCTTCAAGCATTACTTACTTGCCGTGCCTTGATGAAGCCTGTGTGTTTGATGTTTTGGCATACACGGATAAAGATCTTGCAGTCCCATTCACTTGGGTTGAAAGTGACCCCAAACTGATTGCAAATCCACAAATTGTGAAATTGCATTCCTTTGACACCAAGATTCACAAGGTTGACACTCTAGTGTCCTACAAGAATGACGAATGGGATGAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000775 GO:0000776 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005737 GO:0005819 GO:0005828 GO:0005856 GO:0005874 GO:0005876 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0009987 GO:0010369 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015630 GO:0022402 GO:0030071 GO:0031577 GO:0031967 GO:0031975 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04914 ko05166 map04110 map04111 map04113 map04114 map04914 map05166

Pfam Domains

Protein Families

HORMA

Protein Analysis

208

Amino Acids

23.55

Weight (kDa)

5.01

Isoelectric Point (pI)

31.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25980 AT3G25980 AT3G25980 AT3G25980
fragaria_vesca	FvH4_4g24620 FvH4_4g24620 FvH4_4g24620 FvH4_4g24620
malus_domestica	MD13G1109700.v1.1 MD16G1109600.v1.1
prunus_persica	Prupe.1G235300_v2.0.a1 Prupe.1G235600_v2.0.a1
pyrus_communis	pycom13g09550 pycom16g09320
rosa_chinensis	RchiOBHm_Chr4g0431671
rosa_laevigata	RLG00000006898
rosa_multiflora	Rmu_sc0005185.1_g000006 Rmu_sc0011757.1_g000004
rosa_roxburghii	Rroxscaffold_5G00373110
rosa_rugosa	Rorug04G0251700
rosa_samantha	Rh4DG310800
rosa_wichuraiana	Rw4G026740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	326
AciI	CCGC	1 cut(s)	50
AcuI	CTGAAG	2 cut(s)	138, 289
AfaI	GTAC	1 cut(s)	98
AgsI	TTSAA	4 cut(s)	9, 386, 411, 506
AleI	CACNNNNGTG	1 cut(s)	587
AluBI	AGCT	2 cut(s)	126, 214
AluI	AGCT	2 cut(s)	126, 214
Alw26I	GTCTC	1 cut(s)	308
AoxI	GGCC	1 cut(s)	178
ApeKI	GCWGC	1 cut(s)	151
AsuHPI	GGTGA	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	138
BceAI	ACGGC	1 cut(s)	412
BciVI	GTATCC	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	2 cut(s)	290, 587
BfuI	GTATCC	1 cut(s)	123
BglII	AGATCT	1 cut(s)	478
BisI	GCNGC	2 cut(s)	51, 152
BlsI	GCNGC	2 cut(s)	52, 153
BpuEI	CTTGAG	1 cut(s)	153
BsaBI	GATNNNNATC	1 cut(s)	477
Bse8I	GATNNNNATC	1 cut(s)	477
BseGI	GGATG	1 cut(s)	619
BseJI	GATNNNNATC	1 cut(s)	477
BseMII	CTCAG	2 cut(s)	224, 257
BseRI	GAGGAG	1 cut(s)	120
BseXI	GCAGC	1 cut(s)	138
BshFI	GGCC	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	473
BsmAI	GTCTC	1 cut(s)	308
BsmFI	GGGAC	1 cut(s)	473
BsmI	GAATGC	1 cut(s)	550
BsnI	GGCC	1 cut(s)	180
Bsp1407I	TGTACA	1 cut(s)	96
Bsp143I	GATC	1 cut(s)	478
BspACI	CCGC	1 cut(s)	50
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	2 cut(s)	223, 258
BspHI	TCATGA	2 cut(s)	372, 393
BsrGI	TGTACA	1 cut(s)	96
BssMI	GATC	1 cut(s)	478
Bst4CI	ACNGT	1 cut(s)	89
BstAUI	TGTACA	1 cut(s)	96
BstDEI	CTNAG	2 cut(s)	210, 266
BstF5I	GGATG	1 cut(s)	619
BstKTI	GATC	1 cut(s)	481
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	1 cut(s)	478
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstV1I	GCAGC	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	478
BstXI	CCANNNNNNTGG	1 cut(s)	498
BstYI	RGATCY	1 cut(s)	478
BsuI	GTATCC	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	180
BtgZI	GCGATG	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	619
CciI	TCATGA	2 cut(s)	372, 393
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	3 cut(s)	157, 373, 394
CviJI	RGCY	8 cut(s)	5, 53, 126, 151, 180, 214, 226, 443
CviKI_1	RGCY	8 cut(s)	5, 53, 126, 151, 180, 214, 226, 443
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	2 cut(s)	210, 266
DpnI	GATC	1 cut(s)	480
DpnII	GATC	1 cut(s)	478
DrdI	GACNNNNNNGTC	1 cut(s)	326
DseDI	GACNNNNNNGTC	1 cut(s)	326
Eco147I	AGGCCT	1 cut(s)	180
Eco57I	CTGAAG	2 cut(s)	138, 289
FaeI	CATG	3 cut(s)	160, 376, 397
FaiI	YATR	6 cut(s)	147, 158, 263, 374, 395, 466
FalI	AAGNNNNNCTT	2 cut(s)	403, 435
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	3 cut(s)	156, 372, 393
Fnu4HI	GCNGC	2 cut(s)	51, 152
Fsp4HI	GCNGC	2 cut(s)	51, 152
FspBI	CTAG	2 cut(s)	290, 587
GluI	GCNGC	2 cut(s)	51, 152
HaeIII	GGCC	1 cut(s)	180
Hin1II	CATG	3 cut(s)	160, 376, 397
HincII	GTYRAC	1 cut(s)	580
HindII	GTYRAC	1 cut(s)	580
HindIII	AAGCTT	1 cut(s)	124
HinfI	GANTC	4 cut(s)	230, 344, 382, 568
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	1 cut(s)	580
Hpy188I	TCNGA	2 cut(s)	74, 220
Hpy188III	TCNNGA	6 cut(s)	9, 116, 170, 290, 373, 394
Hpy8I	GTNNAC	1 cut(s)	580
HpyAV	CCTTC	3 cut(s)	170, 199, 331
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4V	TGCA	4 cut(s)	131, 485, 527, 550
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpyF3I	CTNAG	2 cut(s)	210, 266
Hsp92II	CATG	3 cut(s)	160, 376, 397
Kzo9I	GATC	1 cut(s)	478
LpnPI	CCDG	5 cut(s)	129, 212, 219, 242, 457
Lsp1109I	GCAGC	1 cut(s)	138
MaeI	CTAG	2 cut(s)	290, 587
MaeIII	GTNAC	3 cut(s)	240, 359, 509
MalI	GATC	1 cut(s)	480
MboI	GATC	1 cut(s)	478
MboII	GAAGA	3 cut(s)	61, 131, 151
MflI	RGATCY	1 cut(s)	478
MluCI	AATT	2 cut(s)	537, 545
MlyI	GAGTC	1 cut(s)	353
MnlI	CCTC	8 cut(s)	98, 191, 277, 288, 319, 342, 369, 390
MslI	CAYNNNNRTG	1 cut(s)	587
MspA1I	CMGCKG	1 cut(s)	50
Mva1269I	GAATGC	1 cut(s)	550
MwoI	GCNNNNNNNGC	1 cut(s)	160
NdeII	GATC	1 cut(s)	478
NlaIII	CATG	3 cut(s)	160, 376, 397
NmuCI	GTSAC	2 cut(s)	359, 509
OliI	CACNNNNGTG	1 cut(s)	587
PagI	TCATGA	2 cut(s)	372, 393
PceI	AGGCCT	1 cut(s)	180
PctI	GAATGC	1 cut(s)	550
PfeI	GAWTC	3 cut(s)	230, 382, 568
PkrI	GCNGC	2 cut(s)	52, 153
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
PsuI	RGATCY	1 cut(s)	478
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
RseI	CAYNNNNRTG	1 cut(s)	587
SatI	GCNGC	2 cut(s)	51, 152
Sau3AI	GATC	1 cut(s)	478
SchI	GAGTC	1 cut(s)	353
SetI	ASST	7 cut(s)	128, 138, 216, 288, 299, 330, 579
SmiMI	CAYNNNNRTG	1 cut(s)	587
SmlI	CTYRAG	1 cut(s)	168
SmoI	CTYRAG	1 cut(s)	168
Sse9I	AATT	2 cut(s)	537, 545
SseBI	AGGCCT	1 cut(s)	180
SsiI	CCGC	1 cut(s)	50
SspMI	CTAG	2 cut(s)	290, 587
StuI	AGGCCT	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	89
TaqI	TCGA	2 cut(s)	103, 347
TasI	AATT	2 cut(s)	537, 545
TatI	WGTACW	1 cut(s)	96
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	3 cut(s)	230, 382, 568
TseFI	GTSAC	2 cut(s)	359, 509
TseI	GCWGC	1 cut(s)	151
Tsp45I	GTSAC	2 cut(s)	359, 509
TspDTI	ATGAA	3 cut(s)	181, 189, 453
TspGWI	ACGGA	1 cut(s)	485
XbaI	TCTAGA	1 cut(s)	289
XspI	CTAG	2 cut(s)	290, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.