AT3G26420

Zinc knuckle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013848
Physical Location & Seq
Forward (+)
9671517 .. 9676005
4489 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G26420.1

Sequence Viewer

Length: 738 bp
ATGTCTGAAGATCCGGAGTACCGTTGCTTCATTGGTGGGCTTGCTTGGACAACGTCTGATCGTGGTCTCAGAGATGCCTTTGAGAAGTATGGTCACCTCGTTGAGGCCAAGGTGGTTCTTGACAAGTTTTCTGGTCGCTCCCGTGGTTTTGGATTCATCACTTTCGATGAGAAAAAAGCTATGGATGAAGCTATTGCAGCAATGAATGGAATGGATTTGGATGGGCGAACTATCACTGTTGATAAAGCTCAGCCTCATCAGGGTGGTGCAGGCAGAGATAATGATGGTGACCGTGGTCGAGACCGTGGATATGATCGTGATCGCAGTCGTCCCTCTGGTGGGCGAGGTGGTGGAGATTGCTTTAAATGTGGCAAGCCTGGACATTTTGCAAGAGAGTGTCCTTCTGAAAGTAGTAGAGATGGTGGTGGAAGGTTCAGCTCAAAGGATGATAGGTACAGTTCGAAGGACGATAGGTATGGTGCAAAAGATGATAGGTATGGTGCAAAGGAGGATAGGTATGGTGCAAAGGATGATAGGTACAGCTCCAAGGATGATAGGTACAGCTCCAAGGATGATAGGTATGGTAGTAGGGATGGTGGAGGTAGTCGCTATGGACCTGATCGCAGTGGTGAACGCGCTGGAGGACGCAGCCGGGATGGTGGCAGCCGTGGAGCTCCAGGAGGTGAGAGGCACAGTCGTGCTCCATATGACCGCCCCAGAGCTGGTGGTTTCCACTAG

Protein Analysis

245

Amino Acids

26.92

Weight (kDa)

8.93

Isoelectric Point (pI)

33.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 10 - 79 1.2e-19 RNA recognition motif
zf-CCHC PF00098 120 - 135 1.2e-07 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013848)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26420
fragaria_vesca FvH4_6g05361
malus_domestica MD04G1208800.v1.1 MD12G1223200.v1.1
prunus_persica Prupe.6G329800_v2.0.a1 Prupe.6G329800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0454141
rosa_laevigata RLG00000025479
rosa_multiflora Rmu_sc0018584.1_g000002
rosa_roxburghii Rroxscaffold_165G00436920
rosa_rugosa Rorug02G0653500 Rorug02G0653500
rosa_samantha Rh3AG056200 Rh3BG057600 Rh3CG056900 Rh3DG058100
rosa_wichuraiana Rw3G004320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 636
AccIII TCCGGA 1 cut(s) 13
AciI CCGC 1 cut(s) 712
AclWI GGATC 1 cut(s) 5
AcuI CTGAAG 1 cut(s) 27
AfaI GTAC 4 cut(s) 20, 455, 539, 560
AfiI CCNNNNNNNGG 5 cut(s) 103, 260, 338, 339, 722
AjnI CCWGG 2 cut(s) 376, 676
AleI CACNNNNGTG 1 cut(s) 696
AluBI AGCT 8 cut(s) 179, 191, 248, 438, 543, 564, 674, 722
AluI AGCT 8 cut(s) 179, 191, 248, 438, 543, 564, 674, 722
Alw21I GWGCWC 2 cut(s) 676, 703
Alw26I GTCTC 2 cut(s) 71, 294
AlwI GGATC 1 cut(s) 5
Aor13HI TCCGGA 1 cut(s) 13
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 3 cut(s) 197, 648, 663
AspLEI GCGC 1 cut(s) 638
AspS9I GGNCC 1 cut(s) 614
AsuC2I CCSGG 1 cut(s) 653
AsuHPI GGTGA 4 cut(s) 86, 299, 641, 695
AsuII TTCGAA 1 cut(s) 461
AvaII GGWCC 1 cut(s) 614
BanII GRGCYC 1 cut(s) 676
BarI GAAGNNNNNNTAC 2 cut(s) 11, 43
Bbv12I GWGCWC 2 cut(s) 676, 703
BbvI GCAGC 3 cut(s) 209, 660, 675
BccI CCATC 5 cut(s) 215, 278, 413, 587, 650
BceAI ACGGC 1 cut(s) 651
BciT130I CCWGG 2 cut(s) 378, 678
BcnI CCSGG 1 cut(s) 653
BcoDI GTCTC 2 cut(s) 71, 294
BfaI CTAG 1 cut(s) 736
BisI GCNGC 3 cut(s) 198, 649, 664
BlpI GCTNAGC 1 cut(s) 249
BlsI GCNGC 3 cut(s) 199, 650, 665
Bme1390I CCNGG 3 cut(s) 378, 653, 678
Bme18I GGWCC 1 cut(s) 614
BmgT120I GGNCC 1 cut(s) 614
BmrFI CCNGG 3 cut(s) 378, 653, 678
BmsI GCATC 1 cut(s) 64
BoxI GACNNNNGTC 1 cut(s) 294
BpmI CTGGAG 2 cut(s) 660, 660
Bpu1102I GCTNAGC 1 cut(s) 249
Bpu14I TTCGAA 1 cut(s) 461
BpuMI CCSGG 1 cut(s) 653
BsaBI GATNNNNATC 1 cut(s) 318
BsaI GGTCTC 2 cut(s) 71, 294
BsaJI CCNNGG 7 cut(s) 108, 142, 292, 304, 546, 567, 667
BsaWI WCCGGW 1 cut(s) 13
BsaXI ACNNNNNCTCC 2 cut(s) 500, 530
Bsc4I CCNNNNNNNGG 5 cut(s) 103, 260, 338, 339, 722
Bse3DI GCAATG 1 cut(s) 207
Bse8I GATNNNNATC 1 cut(s) 318
BseAI TCCGGA 1 cut(s) 13
BseBI CCWGG 2 cut(s) 378, 678
BseDI CCNNGG 7 cut(s) 108, 142, 292, 304, 546, 567, 667
BseGI GGATG 8 cut(s) 190, 226, 451, 535, 556, 577, 598, 661
BseJI GATNNNNATC 1 cut(s) 318
BseLI CCNNNNNNNGG 5 cut(s) 103, 260, 338, 339, 722
BseMI GCAATG 1 cut(s) 207
BseMII CTCAG 2 cut(s) 82, 263
BseXI GCAGC 3 cut(s) 209, 660, 675
BsgI GTGCAG 1 cut(s) 288
Bsh1236I CGCG 1 cut(s) 636
BshFI GGCC 1 cut(s) 107
BsiHKAI GWGCWC 2 cut(s) 676, 703
BsiSI CCGG 2 cut(s) 14, 652
BslFI GGGAC 1 cut(s) 315
BslI CCNNNNNNNGG 5 cut(s) 103, 260, 338, 339, 722
BsmAI GTCTC 2 cut(s) 71, 294
BsmFI GGGAC 1 cut(s) 315
BsnI GGCC 1 cut(s) 107
Bso31I GGTCTC 2 cut(s) 71, 294
Bsp119I TTCGAA 1 cut(s) 461
Bsp1286I GDGCHC 2 cut(s) 676, 703
Bsp13I TCCGGA 1 cut(s) 13
Bsp143I GATC 5 cut(s) 10, 58, 313, 319, 619
Bsp1720I GCTNAGC 1 cut(s) 249
BspACI CCGC 1 cut(s) 712
BspANI GGCC 1 cut(s) 107
BspCNI CTCAG 2 cut(s) 81, 262
BspEI TCCGGA 1 cut(s) 13
BspFNI CGCG 1 cut(s) 636
BspPI GGATC 1 cut(s) 5
BspT104I TTCGAA 1 cut(s) 461
BspTNI GGTCTC 2 cut(s) 71, 294
BsrDI GCAATG 1 cut(s) 207
BssECI CCNNGG 7 cut(s) 108, 142, 292, 304, 546, 567, 667
BssMI GATC 5 cut(s) 10, 58, 313, 319, 619
BssT1I CCWWGG 3 cut(s) 108, 546, 567
Bst2UI CCWGG 2 cut(s) 378, 678
Bst4CI ACNGT 6 cut(s) 23, 238, 293, 305, 458, 695
BstBI TTCGAA 1 cut(s) 461
BstC8I GCNNGC 3 cut(s) 42, 271, 374
BstDEI CTNAG 2 cut(s) 68, 249
BstDSI CCRYGG 4 cut(s) 142, 292, 304, 667
BstEII GGTNACC 2 cut(s) 92, 287
BstENI CCTNNNNNAGG 1 cut(s) 101
BstF5I GGATG 8 cut(s) 190, 226, 451, 535, 556, 577, 598, 661
BstFNI CGCG 1 cut(s) 636
BstHHI GCGC 1 cut(s) 638
BstKTI GATC 5 cut(s) 13, 61, 316, 322, 622
BstMAI GTCTC 2 cut(s) 71, 294
BstMBI GATC 5 cut(s) 10, 58, 313, 319, 619
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNI CCWGG 2 cut(s) 378, 678
BstPAI GACNNNNGTC 1 cut(s) 294
BstPI GGTNACC 2 cut(s) 92, 287
BstSCI CCNGG 3 cut(s) 376, 651, 676
BstUI CGCG 1 cut(s) 636
BstV1I GCAGC 3 cut(s) 209, 660, 675
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BsuRI GGCC 1 cut(s) 107
BtgI CCRYGG 4 cut(s) 142, 292, 304, 667
BtsCI GGATG 8 cut(s) 190, 226, 451, 535, 556, 577, 598, 661
BtsI GCAGTG 1 cut(s) 631
BtsIMutI CAGTG 2 cut(s) 234, 631
Cac8I GCNNGC 3 cut(s) 42, 271, 374
CfoI GCGC 1 cut(s) 638
Cfr13I GGNCC 1 cut(s) 614
CseI GACGC 1 cut(s) 654
Csp6I GTAC 4 cut(s) 19, 454, 538, 559
CviQI GTAC 4 cut(s) 19, 454, 538, 559
DdeI CTNAG 2 cut(s) 68, 249
DpnI GATC 5 cut(s) 12, 60, 315, 321, 621
DpnII GATC 5 cut(s) 10, 58, 313, 319, 619
DraI TTTAAA 1 cut(s) 364
Ecl136II GAGCTC 1 cut(s) 674
Eco130I CCWWGG 3 cut(s) 108, 546, 567
Eco24I GRGCYC 1 cut(s) 676
Eco31I GGTCTC 2 cut(s) 71, 294
Eco47I GGWCC 1 cut(s) 614
Eco53kI GAGCTC 1 cut(s) 674
Eco57I CTGAAG 1 cut(s) 27
Eco91I GGTNACC 2 cut(s) 92, 287
EcoICRI GAGCTC 1 cut(s) 674
EcoNI CCTNNNNNAGG 1 cut(s) 101
EcoO65I GGTNACC 2 cut(s) 92, 287
EcoRII CCWGG 2 cut(s) 376, 676
EcoT14I CCWWGG 3 cut(s) 108, 546, 567
EcoT38I GRGCYC 1 cut(s) 676
ErhI CCWWGG 3 cut(s) 108, 546, 567
FaqI GGGAC 1 cut(s) 315
FauNDI CATATG 1 cut(s) 706
Fnu4HI GCNGC 3 cut(s) 198, 649, 664
FokI GGATG 8 cut(s) 197, 233, 458, 542, 563, 584, 605, 668
FriOI GRGCYC 1 cut(s) 676
Fsp4HI GCNGC 3 cut(s) 198, 649, 664
FspBI CTAG 1 cut(s) 736
GlaI GCGC 1 cut(s) 637
GluI GCNGC 3 cut(s) 198, 649, 664
GsuI CTGGAG 2 cut(s) 660, 660
HaeIII GGCC 1 cut(s) 107
HapII CCGG 2 cut(s) 14, 652
HgaI GACGC 1 cut(s) 654
HhaI GCGC 1 cut(s) 638
Hin6I GCGC 1 cut(s) 636
HinP1I GCGC 1 cut(s) 636
HinfI GANTC 1 cut(s) 153
HpaII CCGG 2 cut(s) 14, 652
HphI GGTGA 4 cut(s) 86, 299, 641, 695
Hpy166II GTNNAC 1 cut(s) 632
Hpy188I TCNGA 4 cut(s) 7, 58, 71, 406
Hpy188III TCNNGA 4 cut(s) 14, 119, 299, 317
Hpy8I GTNNAC 1 cut(s) 632
HpyAV CCTTC 3 cut(s) 411, 423, 457
HpyCH4III ACNGT 6 cut(s) 23, 238, 293, 305, 458, 695
HpyCH4IV ACGT 1 cut(s) 53
HpyCH4V TGCA 6 cut(s) 197, 269, 389, 482, 503, 524
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 2 cut(s) 68, 249
HpySE526I ACGT 1 cut(s) 53
HspAI GCGC 1 cut(s) 636
Kpn2I TCCGGA 1 cut(s) 13
Kzo9I GATC 5 cut(s) 10, 58, 313, 319, 619
LmnI GCTCC 6 cut(s) 143, 548, 569, 671, 679, 706
Lsp1109I GCAGC 3 cut(s) 209, 660, 675
LweI GCATC 1 cut(s) 64
MaeI CTAG 1 cut(s) 736
MaeII ACGT 1 cut(s) 53
MaeIII GTNAC 2 cut(s) 92, 287
MalI GATC 5 cut(s) 12, 60, 315, 321, 621
MboI GATC 5 cut(s) 10, 58, 313, 319, 619
MboII GAAGA 1 cut(s) 20
MflI RGATCY 1 cut(s) 10
MhlI GDGCHC 2 cut(s) 676, 703
MroI TCCGGA 1 cut(s) 13
MseI TTAA 1 cut(s) 363
MslI CAYNNNNRTG 2 cut(s) 261, 696
MspI CCGG 2 cut(s) 14, 652
MspR9I CCNGG 3 cut(s) 378, 653, 678
MvaI CCWGG 2 cut(s) 378, 678
MvnI CGCG 1 cut(s) 636
MwoI GCNNNNNNNGC 1 cut(s) 197
NciI CCSGG 1 cut(s) 653
NdeI CATATG 1 cut(s) 706
NdeII GATC 5 cut(s) 10, 58, 313, 319, 619
NmuCI GTSAC 2 cut(s) 92, 287
NspV TTCGAA 1 cut(s) 461
OliI CACNNNNGTG 1 cut(s) 696
PfeI GAWTC 1 cut(s) 153
PflFI GACNNNGTC 1 cut(s) 52
PfoI TCCNGGA 1 cut(s) 676
PkrI GCNGC 3 cut(s) 199, 650, 665
PshAI GACNNNNGTC 1 cut(s) 294
Psp124BI GAGCTC 1 cut(s) 676
Psp6I CCWGG 2 cut(s) 376, 676
PspEI GGTNACC 2 cut(s) 92, 287
PspGI CCWGG 2 cut(s) 376, 676
PspPI GGNCC 1 cut(s) 614
PsuI RGATCY 1 cut(s) 10
PsyI GACNNNGTC 1 cut(s) 52
RsaI GTAC 4 cut(s) 20, 455, 539, 560
RsaNI GTAC 4 cut(s) 19, 454, 538, 559
RseI CAYNNNNRTG 2 cut(s) 261, 696
SacI GAGCTC 1 cut(s) 676
SaqAI TTAA 1 cut(s) 363
SatI GCNGC 3 cut(s) 198, 649, 664
Sau3AI GATC 5 cut(s) 10, 58, 313, 319, 619
Sau96I GGNCC 1 cut(s) 614
ScrFI CCNGG 3 cut(s) 378, 653, 678
SduI GDGCHC 2 cut(s) 676, 703
SfaNI GCATC 1 cut(s) 64
SfuI TTCGAA 1 cut(s) 461
SinI GGWCC 1 cut(s) 614
SmiMI CAYNNNNRTG 2 cut(s) 261, 696
SsiI CCGC 1 cut(s) 712
SspMI CTAG 1 cut(s) 736
SstI GAGCTC 1 cut(s) 676
StyD4I CCNGG 3 cut(s) 376, 651, 676
StyI CCWWGG 3 cut(s) 108, 546, 567
TaaI ACNGT 6 cut(s) 23, 238, 293, 305, 458, 695
TaiI ACGT 1 cut(s) 56
TaqI TCGA 3 cut(s) 165, 298, 461
TfiI GAWTC 1 cut(s) 153
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TscAI CASTG 2 cut(s) 241, 631
TseFI GTSAC 2 cut(s) 92, 287
TseI GCWGC 3 cut(s) 197, 648, 663
Tsp45I GTSAC 2 cut(s) 92, 287
TspDTI ATGAA 4 cut(s) 19, 145, 201, 218
TspRI CASTG 2 cut(s) 241, 631
Tth111I GACNNNGTC 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 614
XagI CCTNNNNNAGG 1 cut(s) 101
XspI CTAG 1 cut(s) 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.