Prupe.6G329800_v2.0.a1

Glycine-rich RNA-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013848
Physical Location & Seq
Forward (+)
28822798 .. 28825651
2854 bp
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UTR
Exon/CDS
Intron
Prupe.6G329800.1

Sequence Viewer

Length: 663 bp
ATGTCAGAAGAGCTGGAGTATCGATGCTTTATTGGTGGCCTCGCATGGTCAACATCTGATAGAAGTCTAAAAGATGCATTTGACAAGTTTGGAAAGCTTGTTGAAGCCAAGGTAGTTGTTGATAAGTTTTCTGGACGCTCCCGTGGATTTGGGTTTGTCACTTTTGATGATAAAAAAGCAATGGAAGAGGCAATTGAAGAAATGAATGGAATGGATTTGGATGGACGAACTATTACTGTTGATAAAGCTCAGCCTCACCAAGGTTCAGGTAGAGATTATGACGGTGACCGCGGTCGTGACCGTGGTCGTGACCGTGACCGTGGTCGTGATTATGGAGGTGGACGTGGATCAGGTGGAGGAGGAGATTGCTTTAAGTGTGGAAAGCCAGGACATTTTGCTAGGGAGTGCCCAAGTGAAGGTTCAAGGGGAGGCGGCAGGTATGGTAGCAGGGATGATAAGTATGGTGGTGGAGGTGGCGGTGGGGGTGGTGGCAGTGGTCGTTATGGTGGCGGTGGGGGTGGACCTGATCGAAATGGAGACCGATATAGTGGGCGCAGCAGGGATTCTGGTGGTCGTTCAAGTTCTGGAAGTGATCGATTCAGTCGTGACCGCTCAGGGCCATATGAACGTCGGGCGACAGGAGGAGGTTTCCGTTCTGGATAG

Protein Analysis

221

Amino Acids

23.27

Weight (kDa)

9.19

Isoelectric Point (pI)

45.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013848)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26420
fragaria_vesca FvH4_6g05361
malus_domestica MD04G1208800.v1.1 MD12G1223200.v1.1
prunus_persica Prupe.6G329800_v2.0.a1 Prupe.6G329800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0454141
rosa_laevigata RLG00000025479
rosa_multiflora Rmu_sc0018584.1_g000002
rosa_roxburghii Rroxscaffold_165G00436920
rosa_rugosa Rorug02G0653500 Rorug02G0653500
rosa_samantha Rh3AG056200 Rh3BG057600 Rh3CG056900 Rh3DG058100
rosa_wichuraiana Rw3G004320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 426
AccBSI CCGCTC 1 cut(s) 612
AccII CGCG 1 cut(s) 291
AciI CCGC 6 cut(s) 289, 291, 432, 477, 510, 610
AclWI GGATC 1 cut(s) 355
AfiI CCNNNNNNNGG 2 cut(s) 260, 416
AgsI TTSAA 4 cut(s) 104, 197, 423, 579
AjiI CACGTC 1 cut(s) 344
AjnI CCWGG 1 cut(s) 385
AjuI GAANNNNNNNTTGG 2 cut(s) 403, 435
AluBI AGCT 3 cut(s) 13, 97, 248
AluI AGCT 3 cut(s) 13, 97, 248
Alw26I GTCTC 1 cut(s) 531
AlwI GGATC 1 cut(s) 355
AoxI GGCC 2 cut(s) 37, 617
ApeKI GCWGC 1 cut(s) 555
AspLEI GCGC 1 cut(s) 555
AspS9I GGNCC 2 cut(s) 521, 617
AsuHPI GGTGA 2 cut(s) 248, 296
AvaII GGWCC 1 cut(s) 521
BaeGI GKGCMC 1 cut(s) 410
BbvI GCAGC 1 cut(s) 567
BccI CCATC 1 cut(s) 215
BciT130I CCWGG 1 cut(s) 387
BcoDI GTCTC 1 cut(s) 531
BfaI CTAG 1 cut(s) 399
BfuAI ACCTGC 1 cut(s) 426
BisI GCNGC 2 cut(s) 433, 556
BlpI GCTNAGC 1 cut(s) 249
BlsI GCNGC 2 cut(s) 434, 557
Bme1390I CCNGG 1 cut(s) 387
Bme18I GGWCC 1 cut(s) 521
BmgBI CACGTC 1 cut(s) 344
BmgT120I GGNCC 2 cut(s) 521, 617
BmrFI CCNGG 1 cut(s) 387
BmsI GCATC 2 cut(s) 14, 64
BoxI GACNNNNGTC 3 cut(s) 291, 303, 321
BpmI CTGGAG 1 cut(s) 35
Bpu10I CCTNAGC 1 cut(s) 613
Bpu1102I GCTNAGC 1 cut(s) 249
Bsa29I ATCGAT 2 cut(s) 22, 595
BsaI GGTCTC 1 cut(s) 531
BsaJI CCNNGG 6 cut(s) 108, 142, 259, 289, 301, 319
Bsc4I CCNNNNNNNGG 2 cut(s) 260, 416
Bse3DI GCAATG 1 cut(s) 186
BseBI CCWGG 1 cut(s) 387
BseCI ATCGAT 2 cut(s) 22, 595
BseDI CCNNGG 6 cut(s) 108, 142, 259, 289, 301, 319
BseGI GGATG 2 cut(s) 226, 457
BseLI CCNNNNNNNGG 2 cut(s) 260, 416
BseMI GCAATG 1 cut(s) 186
BseMII CTCAG 2 cut(s) 263, 627
BseRI GAGGAG 3 cut(s) 372, 375, 657
BseSI GKGCMC 1 cut(s) 410
BseXI GCAGC 1 cut(s) 567
Bsh1236I CGCG 1 cut(s) 291
Bsh1285I CGRYCG 1 cut(s) 295
BshFI GGCC 2 cut(s) 39, 619
BshVI ATCGAT 2 cut(s) 22, 595
BsiEI CGRYCG 1 cut(s) 295
BslI CCNNNNNNNGG 2 cut(s) 260, 416
BsmAI GTCTC 1 cut(s) 531
BsnI GGCC 2 cut(s) 39, 619
Bso31I GGTCTC 1 cut(s) 531
Bsp1286I GDGCHC 1 cut(s) 410
Bsp143I GATC 3 cut(s) 347, 526, 592
Bsp1720I GCTNAGC 1 cut(s) 249
BspACI CCGC 6 cut(s) 289, 291, 432, 477, 510, 610
BspANI GGCC 2 cut(s) 39, 619
BspCNI CTCAG 2 cut(s) 262, 626
BspDI ATCGAT 2 cut(s) 22, 595
BspFNI CGCG 1 cut(s) 291
BspMI ACCTGC 1 cut(s) 426
BspPI GGATC 1 cut(s) 355
BspQI GCTCTTC 1 cut(s) 3
BspTNI GGTCTC 1 cut(s) 531
BsrBI CCGCTC 1 cut(s) 612
BsrDI GCAATG 1 cut(s) 186
BssECI CCNNGG 6 cut(s) 108, 142, 259, 289, 301, 319
BssMI GATC 3 cut(s) 347, 526, 592
BssT1I CCWWGG 2 cut(s) 108, 259
Bst2UI CCWGG 1 cut(s) 387
Bst4CI ACNGT 5 cut(s) 238, 284, 302, 314, 320
Bst6I CTCTTC 2 cut(s) 3, 180
BstDEI CTNAG 2 cut(s) 249, 613
BstDSI CCRYGG 4 cut(s) 142, 289, 301, 319
BstEII GGTNACC 1 cut(s) 284
BstENI CCTNNNNNAGG 1 cut(s) 258
BstF5I GGATG 2 cut(s) 226, 457
BstFNI CGCG 1 cut(s) 291
BstHHI GCGC 1 cut(s) 555
BstKTI GATC 3 cut(s) 350, 529, 595
BstMAI GTCTC 1 cut(s) 531
BstMBI GATC 3 cut(s) 347, 526, 592
BstMCI CGRYCG 1 cut(s) 295
BstNI CCWGG 1 cut(s) 387
BstPAI GACNNNNGTC 3 cut(s) 291, 303, 321
BstPI GGTNACC 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 385
BstSLI GKGCMC 1 cut(s) 410
BstUI CGCG 1 cut(s) 291
BstV1I GCAGC 1 cut(s) 567
Bsu15I ATCGAT 2 cut(s) 22, 595
BsuRI GGCC 2 cut(s) 39, 619
BsuTUI ATCGAT 2 cut(s) 22, 595
BtgI CCRYGG 4 cut(s) 142, 289, 301, 319
BtrI CACGTC 1 cut(s) 344
BtsCI GGATG 2 cut(s) 226, 457
BtsI GCAGTG 1 cut(s) 499
BtsIMutI CAGTG 1 cut(s) 499
BveI ACCTGC 1 cut(s) 426
CfoI GCGC 1 cut(s) 555
Cfr13I GGNCC 2 cut(s) 521, 617
Cfr42I CCGCGG 1 cut(s) 292
ClaI ATCGAT 2 cut(s) 22, 595
CseI GACGC 1 cut(s) 144
CviAII CATG 1 cut(s) 45
CviJI RGCY 8 cut(s) 13, 39, 97, 107, 248, 253, 385, 619
CviKI_1 RGCY 8 cut(s) 13, 39, 97, 107, 248, 253, 385, 619
DdeI CTNAG 2 cut(s) 249, 613
DpnI GATC 3 cut(s) 349, 528, 594
DpnII GATC 3 cut(s) 347, 526, 592
Eam1104I CTCTTC 2 cut(s) 3, 180
EarI CTCTTC 2 cut(s) 3, 180
Eco130I CCWWGG 2 cut(s) 108, 259
Eco31I GGTCTC 1 cut(s) 531
Eco47I GGWCC 1 cut(s) 521
Eco91I GGTNACC 1 cut(s) 284
EcoNI CCTNNNNNAGG 1 cut(s) 258
EcoO65I GGTNACC 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 385
EcoT14I CCWWGG 2 cut(s) 108, 259
EcoT22I ATGCAT 1 cut(s) 79
ErhI CCWWGG 2 cut(s) 108, 259
FaeI CATG 1 cut(s) 48
FaiI YATR 9 cut(s) 46, 279, 333, 441, 462, 504, 546, 622, 624
FatI CATG 1 cut(s) 44
FauNDI CATATG 1 cut(s) 622
Fnu4HI GCNGC 2 cut(s) 433, 556
FokI GGATG 2 cut(s) 233, 464
Fsp4HI GCNGC 2 cut(s) 433, 556
FspBI CTAG 1 cut(s) 399
GlaI GCGC 1 cut(s) 554
GluI GCNGC 2 cut(s) 433, 556
GsuI CTGGAG 1 cut(s) 35
HaeIII GGCC 2 cut(s) 39, 619
HgaI GACGC 1 cut(s) 144
HhaI GCGC 1 cut(s) 555
Hin1II CATG 1 cut(s) 48
Hin6I GCGC 1 cut(s) 553
HinP1I GCGC 1 cut(s) 553
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 2 cut(s) 563, 597
HphI GGTGA 2 cut(s) 248, 296
Hpy166II GTNNAC 3 cut(s) 51, 341, 521
Hpy188I TCNGA 2 cut(s) 7, 58
Hpy188III TCNNGA 7 cut(s) 132, 296, 308, 326, 585, 605, 657
Hpy8I GTNNAC 3 cut(s) 51, 341, 521
Hpy99I CGWCG 1 cut(s) 633
HpyAV CCTTC 1 cut(s) 410
HpyCH4III ACNGT 5 cut(s) 238, 284, 302, 314, 320
HpyCH4IV ACGT 2 cut(s) 343, 628
HpyCH4V TGCA 1 cut(s) 77
HpyF3I CTNAG 2 cut(s) 249, 613
HpySE526I ACGT 2 cut(s) 343, 628
Hsp92II CATG 1 cut(s) 48
HspAI GCGC 1 cut(s) 553
KspI CCGCGG 1 cut(s) 292
Kzo9I GATC 3 cut(s) 347, 526, 592
LguI GCTCTTC 1 cut(s) 3
LmnI GCTCC 1 cut(s) 143
Lsp1109I GCAGC 1 cut(s) 567
LweI GCATC 2 cut(s) 14, 64
MaeI CTAG 1 cut(s) 399
MaeII ACGT 2 cut(s) 343, 628
MaeIII GTNAC 6 cut(s) 157, 284, 296, 308, 314, 605
MalI GATC 3 cut(s) 349, 528, 594
MbiI CCGCTC 1 cut(s) 612
MboI GATC 3 cut(s) 347, 526, 592
MboII GAAGA 3 cut(s) 20, 197, 209
MfeI CAATTG 1 cut(s) 192
MhlI GDGCHC 1 cut(s) 410
MluCI AATT 1 cut(s) 192
Mph1103I ATGCAT 1 cut(s) 79
MseI TTAA 1 cut(s) 372
MspA1I CMGCKG 1 cut(s) 291
MspR9I CCNGG 1 cut(s) 387
MunI CAATTG 1 cut(s) 192
MvaI CCWGG 1 cut(s) 387
MvnI CGCG 1 cut(s) 291
NdeI CATATG 1 cut(s) 622
NdeII GATC 3 cut(s) 347, 526, 592
NlaIII CATG 1 cut(s) 48
NmuCI GTSAC 6 cut(s) 157, 284, 296, 308, 314, 605
NsiI ATGCAT 1 cut(s) 79
PciSI GCTCTTC 1 cut(s) 3
PcsI WCGNNNNNNNCGW 1 cut(s) 601
PfeI GAWTC 2 cut(s) 563, 597
PkrI GCNGC 2 cut(s) 434, 557
PshAI GACNNNNGTC 3 cut(s) 291, 303, 321
Psp6I CCWGG 1 cut(s) 385
PspEI GGTNACC 1 cut(s) 284
PspGI CCWGG 1 cut(s) 385
PspPI GGNCC 2 cut(s) 521, 617
SacII CCGCGG 1 cut(s) 292
SapI GCTCTTC 1 cut(s) 3
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 2 cut(s) 433, 556
Sau3AI GATC 3 cut(s) 347, 526, 592
Sau96I GGNCC 2 cut(s) 521, 617
ScrFI CCNGG 1 cut(s) 387
SduI GDGCHC 1 cut(s) 410
SfaNI GCATC 2 cut(s) 14, 64
Sfr303I CCGCGG 1 cut(s) 292
SgrBI CCGCGG 1 cut(s) 292
SinI GGWCC 1 cut(s) 521
Sse9I AATT 1 cut(s) 192
SsiI CCGC 6 cut(s) 289, 291, 432, 477, 510, 610
SspMI CTAG 1 cut(s) 399
StyD4I CCNGG 1 cut(s) 385
StyI CCWWGG 2 cut(s) 108, 259
TaaI ACNGT 5 cut(s) 238, 284, 302, 314, 320
TaiI ACGT 2 cut(s) 346, 631
TaqI TCGA 3 cut(s) 22, 529, 595
TaqII GACCGA 1 cut(s) 555
TasI AATT 1 cut(s) 192
TauI GCSGC 1 cut(s) 435
TfiI GAWTC 2 cut(s) 563, 597
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TscAI CASTG 1 cut(s) 499
TseFI GTSAC 6 cut(s) 157, 284, 296, 308, 314, 605
TseI GCWGC 1 cut(s) 555
Tsp45I GTSAC 6 cut(s) 157, 284, 296, 308, 314, 605
TspDTI ATGAA 2 cut(s) 218, 639
TspGWI ACGGA 1 cut(s) 641
TspRI CASTG 1 cut(s) 499
VpaK11BI GGWCC 1 cut(s) 521
XagI CCTNNNNNAGG 1 cut(s) 258
XspI CTAG 1 cut(s) 399
Zsp2I ATGCAT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.