Rmu_sc0018584.1_g000002

Glycine-rich RNA-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018584.1
OG0013848
Physical Location & Seq
Forward (+)
5054 .. 7626
2573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018584.1_g000002.1.cds

Sequence Viewer

Length: 861 bp
atgacatgtcgtttctccatggccggtcttcttgttttcgaagccgaacccaaaagaaagaaaacccccaaaccttctctctctctcacacaagtcttgagatctagccctaaatcgctcttcgctgtttataaaatgtcggaagaacccgagtatcgttgctttattggtggccttgcctggtcaacgtctgataggagtctaaaagaagcttttgacaagtatgggaagcttgttgaagccaaggttgttgttgataagttctcggggcgctctcgtggatttgggtttgtcacttttgatgataaaaaagcaatggaagaggcaattgaggaaatgaatggaatcgatttagatgggcgaactatcactgttgataaagctcagcctcaccaaggttcaggtagagattatgatggtgaccgcagccgtgatcgtggcggccgcgatcgtgaccgtggtcgtgattatggaggtggcggacgtggatctggtggtatggtggtagggatgataagtacagtggaggaggtggtggtggtggtagccgctatggagaccgaaatggaggaggaggagggcctgatcgaaatggagaccgatacagcgggcgcagcagggattctggttctggtggtcgttcaagctctggaagcgatcgtttcagtcgtgaccgctctggtccatatgagcgtcgggggacaggaggtttccgttctggatagaatcagtgctttggacagtgctcccgatggaaggtgctgctcaactggctttcaccgtctgcactgcattgaagtttcttctggatatgttctgatgatgtctgagtggactaatttcgttagaccagtgttttga

Protein Analysis

286

Amino Acids

31.21

Weight (kDa)

5.15

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013848)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26420
fragaria_vesca FvH4_6g05361
malus_domestica MD04G1208800.v1.1 MD12G1223200.v1.1
prunus_persica Prupe.6G329800_v2.0.a1 Prupe.6G329800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0454141
rosa_laevigata RLG00000025479
rosa_multiflora Rmu_sc0018584.1_g000002
rosa_roxburghii Rroxscaffold_165G00436920
rosa_rugosa Rorug02G0653500 Rorug02G0653500
rosa_samantha Rh3AG056200 Rh3BG057600 Rh3CG056900 Rh3DG058100
rosa_wichuraiana Rw3G004320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 132
AccBSI CCGCTC 1 cut(s) 677
AccII CGCG 1 cut(s) 447
AciI CCGC 7 cut(s) 424, 441, 445, 480, 549, 608, 675
AclWI GGATC 1 cut(s) 496
AcoI YGGCCR 2 cut(s) 21, 442
AfaI GTAC 1 cut(s) 520
AfiI CCNNNNNNNGG 2 cut(s) 395, 756
AflIII ACRYGT 1 cut(s) 5
AgsI TTSAA 3 cut(s) 239, 644, 797
AjiI CACGTC 1 cut(s) 485
AjnI CCWGG 1 cut(s) 179
AluBI AGCT 4 cut(s) 212, 232, 383, 647
AluI AGCT 4 cut(s) 212, 232, 383, 647
Alw21I GWGCWC 1 cut(s) 748
Alw26I GTCTC 2 cut(s) 551, 590
AlwI GGATC 1 cut(s) 496
Ama87I CYCGRG 2 cut(s) 149, 265
AoxI GGCC 4 cut(s) 21, 172, 442, 580
ApeKI GCWGC 3 cut(s) 426, 614, 762
ArsI GACNNNNNNTTYG 1 cut(s) 840
AspLEI GCGC 2 cut(s) 273, 614
AspS9I GGNCC 2 cut(s) 580, 682
AsuHPI GGTGA 3 cut(s) 383, 431, 770
AsuII TTCGAA 1 cut(s) 39
AvaI CYCGRG 2 cut(s) 149, 265
AvaII GGWCC 1 cut(s) 682
BaeI ACNNNNGTAYC 2 cut(s) 137, 170
BauI CACGAG 1 cut(s) 276
BbsI GAAGAC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 748
BbvI GCAGC 3 cut(s) 438, 626, 749
BccI CCATC 3 cut(s) 350, 410, 746
BceAI ACGGC 1 cut(s) 414
BciT130I CCWGG 1 cut(s) 181
BcoDI GTCTC 2 cut(s) 551, 590
BfaI CTAG 1 cut(s) 105
BfoI RGCGCY 1 cut(s) 274
BglII AGATCT 1 cut(s) 101
BisI GCNGC 6 cut(s) 427, 442, 445, 549, 615, 763
BlpI GCTNAGC 1 cut(s) 384
BlsI GCNGC 6 cut(s) 428, 443, 446, 550, 616, 764
Bme1390I CCNGG 1 cut(s) 181
Bme18I GGWCC 1 cut(s) 682
BmeT110I CYCGRG 2 cut(s) 149, 265
BmgBI CACGTC 1 cut(s) 485
BmgT120I GGNCC 2 cut(s) 580, 682
BmrFI CCNGG 1 cut(s) 181
BoxI GACNNNNGTC 1 cut(s) 459
BpiI GAAGAC 1 cut(s) 20
Bpu1102I GCTNAGC 1 cut(s) 384
Bpu14I TTCGAA 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 118
Bsa29I ATCGAT 1 cut(s) 348
BsaI GGTCTC 2 cut(s) 551, 590
BsaJI CCNNGG 4 cut(s) 18, 243, 394, 457
Bsc4I CCNNNNNNNGG 2 cut(s) 395, 756
Bse118I RCCGGY 1 cut(s) 23
Bse1I ACTGG 2 cut(s) 775, 851
Bse3DI GCAATG 1 cut(s) 321
BseBI CCWGG 1 cut(s) 181
BseCI ATCGAT 1 cut(s) 348
BseDI CCNNGG 4 cut(s) 18, 243, 394, 457
BseGI GGATG 1 cut(s) 516
BseLI CCNNNNNNNGG 2 cut(s) 395, 756
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 2 cut(s) 398, 819
BseNI ACTGG 2 cut(s) 775, 851
BseRI GAGGAG 4 cut(s) 542, 584, 587, 590
BseX3I CGGCCG 1 cut(s) 442
BseXI GCAGC 3 cut(s) 438, 626, 749
BsgI GTGCAG 1 cut(s) 770
Bsh1236I CGCG 1 cut(s) 447
Bsh1285I CGRYCG 3 cut(s) 445, 451, 660
BshFI GGCC 4 cut(s) 23, 174, 444, 582
BshVI ATCGAT 1 cut(s) 348
BsiEI CGRYCG 3 cut(s) 445, 451, 660
BsiHKAI GWGCWC 1 cut(s) 748
BsiHKCI CYCGRG 2 cut(s) 149, 265
BsiSI CCGG 1 cut(s) 24
BslFI GGGAC 1 cut(s) 714
BslI CCNNNNNNNGG 2 cut(s) 395, 756
BsmAI GTCTC 2 cut(s) 551, 590
BsmFI GGGAC 1 cut(s) 714
BsnI GGCC 4 cut(s) 23, 174, 444, 582
Bso31I GGTCTC 2 cut(s) 551, 590
BsoBI CYCGRG 2 cut(s) 149, 265
Bsp119I TTCGAA 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 748
Bsp143I GATC 6 cut(s) 101, 433, 448, 488, 585, 657
Bsp1720I GCTNAGC 1 cut(s) 384
Bsp19I CCATGG 1 cut(s) 18
BspACI CCGC 7 cut(s) 424, 441, 445, 480, 549, 608, 675
BspANI GGCC 4 cut(s) 23, 174, 444, 582
BspCNI CTCAG 2 cut(s) 397, 820
BspDI ATCGAT 1 cut(s) 348
BspFNI CGCG 1 cut(s) 447
BspPI GGATC 1 cut(s) 496
BspQI GCTCTTC 1 cut(s) 125
BspT104I TTCGAA 1 cut(s) 39
BspTNI GGTCTC 2 cut(s) 551, 590
BsrBI CCGCTC 1 cut(s) 677
BsrDI GCAATG 1 cut(s) 321
BsrFI RCCGGY 1 cut(s) 23
BsrI ACTGG 2 cut(s) 775, 851
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 4 cut(s) 18, 243, 394, 457
BssMI GATC 6 cut(s) 101, 433, 448, 488, 585, 657
BssSI CACGAG 1 cut(s) 276
BssT1I CCWWGG 3 cut(s) 18, 243, 394
Bst2BI CACGAG 1 cut(s) 276
Bst2UI CCWGG 1 cut(s) 181
Bst4CI ACNGT 5 cut(s) 373, 458, 523, 743, 782
Bst6I CTCTTC 2 cut(s) 125, 315
BstBI TTCGAA 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 610
BstDEI CTNAG 2 cut(s) 384, 828
BstDSI CCRYGG 2 cut(s) 18, 457
BstEII GGTNACC 1 cut(s) 419
BstENI CCTNNNNNAGG 1 cut(s) 393
BstF5I GGATG 1 cut(s) 516
BstFNI CGCG 1 cut(s) 447
BstH2I RGCGCY 1 cut(s) 274
BstHHI GCGC 2 cut(s) 273, 614
BstKTI GATC 6 cut(s) 104, 436, 451, 491, 588, 660
BstMAI GTCTC 2 cut(s) 551, 590
BstMBI GATC 6 cut(s) 101, 433, 448, 488, 585, 657
BstMCI CGRYCG 3 cut(s) 445, 451, 660
BstMWI GCNNNNNNNGC 3 cut(s) 614, 653, 771
BstNI CCWGG 1 cut(s) 181
BstNSI RCATGY 1 cut(s) 9
BstPAI GACNNNNGTC 1 cut(s) 459
BstPI GGTNACC 1 cut(s) 419
BstSCI CCNGG 1 cut(s) 179
BstUI CGCG 1 cut(s) 447
BstV1I GCAGC 3 cut(s) 438, 626, 749
BstV2I GAAGAC 1 cut(s) 20
BstX2I RGATCY 2 cut(s) 101, 488
BstYI RGATCY 2 cut(s) 101, 488
BstZI CGGCCG 1 cut(s) 442
Bsu15I ATCGAT 1 cut(s) 348
BsuRI GGCC 4 cut(s) 23, 174, 444, 582
BsuTUI ATCGAT 1 cut(s) 348
BtgI CCRYGG 2 cut(s) 18, 457
BtrI CACGTC 1 cut(s) 485
BtsCI GGATG 1 cut(s) 516
BtsI GCAGTG 1 cut(s) 787
BtsIMutI CAGTG 6 cut(s) 369, 528, 736, 748, 787, 858
Cac8I GCNNGC 1 cut(s) 610
CciNI GCGGCCGC 1 cut(s) 442
CfoI GCGC 2 cut(s) 273, 614
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 2 cut(s) 580, 682
ClaI ATCGAT 1 cut(s) 348
CseI GACGC 1 cut(s) 682
Csp6I GTAC 1 cut(s) 519
CviAII CATG 2 cut(s) 6, 19
CviQI GTAC 1 cut(s) 519
DdeI CTNAG 2 cut(s) 384, 828
DpnI GATC 6 cut(s) 103, 435, 450, 490, 587, 659
DpnII GATC 6 cut(s) 101, 433, 448, 488, 585, 657
EaeI YGGCCR 2 cut(s) 21, 442
EagI CGGCCG 1 cut(s) 442
Eam1104I CTCTTC 2 cut(s) 125, 315
EarI CTCTTC 2 cut(s) 125, 315
EciI GGCGGA 1 cut(s) 495
EclXI CGGCCG 1 cut(s) 442
Eco130I CCWWGG 3 cut(s) 18, 243, 394
Eco31I GGTCTC 2 cut(s) 551, 590
Eco47I GGWCC 1 cut(s) 682
Eco52I CGGCCG 1 cut(s) 442
Eco88I CYCGRG 2 cut(s) 149, 265
Eco91I GGTNACC 1 cut(s) 419
EcoNI CCTNNNNNAGG 1 cut(s) 393
EcoO109I RGGNCCY 1 cut(s) 580
EcoO65I GGTNACC 1 cut(s) 419
EcoRII CCWGG 1 cut(s) 179
EcoT14I CCWWGG 3 cut(s) 18, 243, 394
ErhI CCWWGG 3 cut(s) 18, 243, 394
FaeI CATG 2 cut(s) 9, 22
FaqI GGGAC 1 cut(s) 714
FatI CATG 2 cut(s) 5, 18
FauI CCCGC 1 cut(s) 601
FauNDI CATATG 1 cut(s) 687
Fnu4HI GCNGC 6 cut(s) 427, 442, 445, 549, 615, 763
FokI GGATG 1 cut(s) 523
Fsp4HI GCNGC 6 cut(s) 427, 442, 445, 549, 615, 763
FspBI CTAG 1 cut(s) 105
GlaI GCGC 2 cut(s) 272, 613
GluI GCNGC 6 cut(s) 427, 442, 445, 549, 615, 763
HaeII RGCGCY 1 cut(s) 274
HaeIII GGCC 4 cut(s) 23, 174, 444, 582
HapII CCGG 1 cut(s) 24
HgaI GACGC 1 cut(s) 682
HhaI GCGC 2 cut(s) 273, 614
Hin1II CATG 2 cut(s) 9, 22
Hin6I GCGC 2 cut(s) 271, 612
HinP1I GCGC 2 cut(s) 271, 612
HincII GTYRAC 1 cut(s) 186
HindII GTYRAC 1 cut(s) 186
HindIII AAGCTT 2 cut(s) 210, 230
HinfI GANTC 4 cut(s) 199, 345, 622, 726
HpaII CCGG 1 cut(s) 24
HphI GGTGA 3 cut(s) 383, 431, 770
Hpy166II GTNNAC 2 cut(s) 186, 834
Hpy188I TCNGA 4 cut(s) 142, 193, 819, 829
Hpy188III TCNNGA 8 cut(s) 97, 452, 464, 650, 670, 719, 749, 807
Hpy8I GTNNAC 2 cut(s) 186, 834
Hpy99I CGWCG 1 cut(s) 698
HpyAV CCTTC 2 cut(s) 84, 750
HpyCH4III ACNGT 5 cut(s) 373, 458, 523, 743, 782
HpyCH4IV ACGT 2 cut(s) 188, 484
HpyCH4V TGCA 2 cut(s) 787, 792
HpyF10VI GCNNNNNNNGC 3 cut(s) 614, 653, 771
HpyF3I CTNAG 2 cut(s) 384, 828
HpySE526I ACGT 2 cut(s) 188, 484
Hsp92II CATG 2 cut(s) 9, 22
HspAI GCGC 2 cut(s) 271, 612
Kzo9I GATC 6 cut(s) 101, 433, 448, 488, 585, 657
LguI GCTCTTC 1 cut(s) 125
LmnI GCTCC 1 cut(s) 751
Lsp1109I GCAGC 3 cut(s) 438, 626, 749
MaeI CTAG 1 cut(s) 105
MaeII ACGT 2 cut(s) 188, 484
MaeIII GTNAC 4 cut(s) 292, 419, 452, 670
MalI GATC 6 cut(s) 103, 435, 450, 490, 587, 659
MbiI CCGCTC 1 cut(s) 677
MboI GATC 6 cut(s) 101, 433, 448, 488, 585, 657
MboII GAAGA 5 cut(s) 20, 112, 155, 332, 795
MfeI CAATTG 1 cut(s) 327
MflI RGATCY 2 cut(s) 101, 488
MhlI GDGCHC 1 cut(s) 748
MluCI AATT 2 cut(s) 327, 838
MlyI GAGTC 1 cut(s) 208
MmeI TCCRAC 1 cut(s) 120
MspA1I CMGCKG 1 cut(s) 608
MspI CCGG 1 cut(s) 24
MspR9I CCNGG 1 cut(s) 181
MunI CAATTG 1 cut(s) 327
MvaI CCWGG 1 cut(s) 181
MvnI CGCG 1 cut(s) 447
MwoI GCNNNNNNNGC 3 cut(s) 614, 653, 771
NcoI CCATGG 1 cut(s) 18
NdeI CATATG 1 cut(s) 687
NdeII GATC 6 cut(s) 101, 433, 448, 488, 585, 657
NlaIII CATG 2 cut(s) 9, 22
NmuCI GTSAC 4 cut(s) 292, 419, 452, 670
NotI GCGGCCGC 1 cut(s) 442
NspI RCATGY 1 cut(s) 9
NspV TTCGAA 1 cut(s) 39
PciI ACATGT 1 cut(s) 5
PciSI GCTCTTC 1 cut(s) 125
PcsI WCGNNNNNNNCGW 1 cut(s) 666
PfeI GAWTC 3 cut(s) 345, 622, 726
PkrI GCNGC 6 cut(s) 428, 443, 446, 550, 616, 764
Ple19I CGATCG 2 cut(s) 451, 660
PleI GAGTC 1 cut(s) 207
PpsI GAGTC 1 cut(s) 207
PscI ACATGT 1 cut(s) 5
PshAI GACNNNNGTC 1 cut(s) 459
PsiI TTATAA 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 179
PspEI GGTNACC 1 cut(s) 419
PspGI CCWGG 1 cut(s) 179
PspPI GGNCC 2 cut(s) 580, 682
PsuI RGATCY 2 cut(s) 101, 488
PvuI CGATCG 2 cut(s) 451, 660
RsaI GTAC 1 cut(s) 520
RsaNI GTAC 1 cut(s) 519
SapI GCTCTTC 1 cut(s) 125
SatI GCNGC 6 cut(s) 427, 442, 445, 549, 615, 763
Sau3AI GATC 6 cut(s) 101, 433, 448, 488, 585, 657
Sau96I GGNCC 2 cut(s) 580, 682
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 1 cut(s) 181
SduI GDGCHC 1 cut(s) 748
SfuI TTCGAA 1 cut(s) 39
SinI GGWCC 1 cut(s) 682
SmlI CTYRAG 1 cut(s) 97
SmoI CTYRAG 1 cut(s) 97
Sse9I AATT 2 cut(s) 327, 838
SsiI CCGC 7 cut(s) 424, 441, 445, 480, 549, 608, 675
SspMI CTAG 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 179
StyI CCWWGG 3 cut(s) 18, 243, 394
TaaI ACNGT 5 cut(s) 373, 458, 523, 743, 782
TaiI ACGT 2 cut(s) 191, 487
TaqI TCGA 3 cut(s) 39, 348, 588
TaqII GACCGA 2 cut(s) 575, 614
TasI AATT 2 cut(s) 327, 838
TatI WGTACW 1 cut(s) 518
TauI GCSGC 3 cut(s) 444, 447, 551
TfiI GAWTC 3 cut(s) 345, 622, 726
TscAI CASTG 6 cut(s) 376, 528, 736, 748, 794, 858
TseFI GTSAC 4 cut(s) 292, 419, 452, 670
TseI GCWGC 3 cut(s) 426, 614, 762
Tsp45I GTSAC 4 cut(s) 292, 419, 452, 670
TspDTI ATGAA 1 cut(s) 353
TspGWI ACGGA 1 cut(s) 703
TspRI CASTG 6 cut(s) 376, 528, 736, 748, 794, 858
VpaK11BI GGWCC 1 cut(s) 682
XagI CCTNNNNNAGG 1 cut(s) 393
XceI RCATGY 1 cut(s) 9
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.