Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017134

Physical Location & Seq

Genomic Coordinates Reverse (-)

9978095 .. 9979843

Gene Structure 1749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G27050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCGTCGTCGCTGCAAAGCTCGGGGATGTTGACGAAAGAGCAAATGGTTTATCTCTTTGATCGATTCGATTACTTGACTTCACAATCTGATGTGAAGAAACGAATCTCCGACGCTGTGGATGACAAACAGGAAGCTGTAGCGGTAACAACTGCTATTCAAGAGGAGATATTCTTGGAGATGGGGATTGACCCGGGATTTGGTATTGGCTGCTTGGGAAAGCTGAACTCTGCATACGAAAACGATAAAGAGTTGATGATTGGTTTCTACAAGTTTCTCGCAAAGGAGGAGATGGCATGTGAAGAAGCTGAGCTTGGACAAGATGGATTTGAACAGAAAATGAAAGCACTACAACAATTACAAGAACAGCAACTAGAGATGCTTAAGTATATGCGTAAATTCTCTCTGGATGATCAATCTGCTATCCTTCAAAAGCTTCAGAAGCAATTAGAAAATGCGGGTTTTGAGCCGGAGGCGTCTCTTTTGTCAGGAGAGGAAATGGAGGAAGCTGGAAGAAGAAGAGTTTCACCTGTTTTTGGAAGCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

20.61

Weight (kDa)

4.58

Isoelectric Point (pI)

72.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27050
fragaria_vesca	FvH4_6g53561
malus_domestica	MD09G1010400.v1.1 MD16G1254400.v1.1
prunus_persica	Prupe.3G306700_v2.0.a1
pyrus_communis	pycom111g00830
rosa_chinensis	RchiOBHm_Chr2g0175601
rosa_laevigata	RLG00000022343
rosa_multiflora	Rmu_sc0000998.1_g000022 Rmu_sc0012222.1_g000001
rosa_rugosa	Rorug02G0586600
rosa_samantha	Rh2CG639800
rosa_wichuraiana	Rw2G054590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	143, 458
AcsI	RAATTY	1 cut(s)	398
AcuI	CTGAAG	1 cut(s)	422
AcyI	GRCGYC	2 cut(s)	5, 476
AfiI	CCNNNNNNNGG	2 cut(s)	200, 536
AflII	CTTAAG	1 cut(s)	383
AgsI	TTSAA	3 cut(s)	161, 332, 431
AjuI	GAANNNNNNNTTGG	2 cut(s)	297, 329
AluBI	AGCT	7 cut(s)	21, 137, 223, 308, 313, 436, 509
AluI	AGCT	7 cut(s)	21, 137, 223, 308, 313, 436, 509
Alw26I	GTCTC	1 cut(s)	483
Ama87I	CYCGRG	2 cut(s)	22, 193
ApeKI	GCWGC	2 cut(s)	13, 210
ApoI	RAATTY	1 cut(s)	398
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
Asp700I	GAANNNNTTC	1 cut(s)	523
AsuC2I	CCSGG	2 cut(s)	194, 195
AsuHPI	GGTGA	1 cut(s)	519
AvaI	CYCGRG	2 cut(s)	22, 193
BbvI	GCAGC	1 cut(s)	197
BccI	CCATC	3 cut(s)	175, 286, 317
BclI	TGATCA	1 cut(s)	412
BcnI	CCSGG	2 cut(s)	194, 195
BcoDI	GTCTC	1 cut(s)	483
BfaI	CTAG	1 cut(s)	374
BfmI	CTRYAG	1 cut(s)	138
BfrI	CTTAAG	1 cut(s)	383
BisI	GCNGC	2 cut(s)	14, 211
BlpI	GCTNAGC	1 cut(s)	309
BlsI	GCNGC	2 cut(s)	15, 212
Bme1390I	CCNGG	2 cut(s)	194, 195
BmeT110I	CYCGRG	2 cut(s)	22, 193
BmrFI	CCNGG	2 cut(s)	194, 195
BmsI	GCATC	1 cut(s)	369
Bpu1102I	GCTNAGC	1 cut(s)	309
BpuMI	CCSGG	2 cut(s)	194, 195
Bsa29I	ATCGAT	1 cut(s)	64
BsaHI	GRCGYC	2 cut(s)	5, 476
BsaJI	CCNNGG	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 536
BseCI	ATCGAT	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	193
BseGI	GGATG	3 cut(s)	33, 127, 415
BseLI	CCNNNNNNNGG	2 cut(s)	200, 536
BseMII	CTCAG	1 cut(s)	300
BseRI	GAGGAG	2 cut(s)	179, 302
BseXI	GCAGC	1 cut(s)	197
BshVI	ATCGAT	1 cut(s)	64
BsiHKCI	CYCGRG	2 cut(s)	22, 193
BsiSI	CCGG	2 cut(s)	194, 470
BslI	CCNNNNNNNGG	2 cut(s)	200, 536
BsmAI	GTCTC	1 cut(s)	483
BsmBI	CGTCTC	1 cut(s)	483
BsoBI	CYCGRG	2 cut(s)	22, 193
Bsp143I	GATC	2 cut(s)	61, 412
Bsp1720I	GCTNAGC	1 cut(s)	309
BspACI	CCGC	2 cut(s)	143, 458
BspCNI	CTCAG	1 cut(s)	301
BspDI	ATCGAT	1 cut(s)	64
BspTI	CTTAAG	1 cut(s)	383
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	2 cut(s)	61, 412
BssNI	GRCGYC	2 cut(s)	5, 476
Bst6I	CTCTTC	1 cut(s)	514
BstACI	GRCGYC	2 cut(s)	5, 476
BstAFI	CTTAAG	1 cut(s)	383
BstDEI	CTNAG	1 cut(s)	309
BstF5I	GGATG	3 cut(s)	33, 127, 415
BstKTI	GATC	2 cut(s)	64, 415
BstMAI	GTCTC	1 cut(s)	483
BstMBI	GATC	2 cut(s)	61, 412
BstMWI	GCNNNNNNNGC	1 cut(s)	442
BstNSI	RCATGY	1 cut(s)	300
BstSCI	CCNGG	2 cut(s)	192, 193
BstSFI	CTRYAG	1 cut(s)	138
BstV1I	GCAGC	1 cut(s)	197
Bsu15I	ATCGAT	1 cut(s)	64
BsuTUI	ATCGAT	1 cut(s)	64
BtsCI	GGATG	3 cut(s)	33, 127, 415
Cfr9I	CCCGGG	1 cut(s)	193
ClaI	ATCGAT	1 cut(s)	64
CseI	GACGC	2 cut(s)	122, 465
CviAII	CATG	1 cut(s)	297
CviJI	RGCY	9 cut(s)	21, 137, 210, 223, 308, 313, 436, 469, 509
CviKI_1	RGCY	9 cut(s)	21, 137, 210, 223, 308, 313, 436, 469, 509
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	2 cut(s)	63, 414
DpnII	GATC	2 cut(s)	61, 412
Eam1104I	CTCTTC	1 cut(s)	514
EarI	CTCTTC	1 cut(s)	514
Eco57I	CTGAAG	1 cut(s)	422
Eco88I	CYCGRG	2 cut(s)	22, 193
Esp3I	CGTCTC	1 cut(s)	483
FaeI	CATG	1 cut(s)	300
FaiI	YATR	4 cut(s)	235, 298, 390, 392
FalI	AAGNNNNNCTT	2 cut(s)	297, 329
FatI	CATG	1 cut(s)	296
FauI	CCCGC	1 cut(s)	451
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	2 cut(s)	14, 211
FokI	GGATG	3 cut(s)	40, 134, 422
Fsp4HI	GCNGC	2 cut(s)	14, 211
FspBI	CTAG	1 cut(s)	374
GluI	GCNGC	2 cut(s)	14, 211
HapII	CCGG	2 cut(s)	194, 470
HgaI	GACGC	2 cut(s)	122, 465
Hin1I	GRCGYC	2 cut(s)	5, 476
Hin1II	CATG	1 cut(s)	300
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	2 cut(s)	66, 105
HpaII	CCGG	2 cut(s)	194, 470
HphI	GGTGA	1 cut(s)	519
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	3 cut(s)	91, 112, 441
Hpy188III	TCNNGA	3 cut(s)	161, 407, 489
Hpy8I	GTNNAC	1 cut(s)	33
Hpy99I	CGWCG	3 cut(s)	10, 13, 116
HpyAV	CCTTC	1 cut(s)	437
HpyCH4V	TGCA	2 cut(s)	16, 233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	442
HpyF3I	CTNAG	1 cut(s)	309
Hsp92I	GRCGYC	2 cut(s)	5, 476
Hsp92II	CATG	1 cut(s)	300
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	2 cut(s)	61, 412
LpnPI	CCDG	7 cut(s)	116, 207, 392, 474, 483, 495, 543
Lsp1109I	GCAGC	1 cut(s)	197
LweI	GCATC	1 cut(s)	369
MaeI	CTAG	1 cut(s)	374
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	2 cut(s)	63, 414
MboI	GATC	2 cut(s)	61, 412
MboII	GAAGA	5 cut(s)	109, 314, 525, 528, 531
MluCI	AATT	3 cut(s)	356, 398, 446
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	5 cut(s)	157, 280, 466, 487, 496
MroXI	GAANNNNTTC	1 cut(s)	523
MseI	TTAA	1 cut(s)	384
MspCI	CTTAAG	1 cut(s)	383
MspI	CCGG	2 cut(s)	194, 470
MspR9I	CCNGG	2 cut(s)	194, 195
MwoI	GCNNNNNNNGC	1 cut(s)	442
NciI	CCSGG	2 cut(s)	194, 195
NdeII	GATC	2 cut(s)	61, 412
NlaIII	CATG	1 cut(s)	300
NspI	RCATGY	1 cut(s)	300
PdmI	GAANNNNTTC	1 cut(s)	523
PfeI	GAWTC	2 cut(s)	66, 105
PkrI	GCNGC	2 cut(s)	15, 212
PsrI	GAACNNNNNNTAC	2 cut(s)	218, 250
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	2 cut(s)	14, 211
Sau3AI	GATC	2 cut(s)	61, 412
ScrFI	CCNGG	2 cut(s)	194, 195
SetI	ASST	8 cut(s)	23, 139, 225, 310, 315, 438, 511, 532
SfaNI	GCATC	1 cut(s)	369
SfcI	CTRYAG	1 cut(s)	138
SmaI	CCCGGG	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	3 cut(s)	356, 398, 446
SsiI	CCGC	2 cut(s)	143, 458
SspMI	CTAG	1 cut(s)	374
StyD4I	CCNGG	2 cut(s)	192, 193
TaqI	TCGA	2 cut(s)	64, 69
TasI	AATT	3 cut(s)	356, 398, 446
TfiI	GAWTC	2 cut(s)	66, 105
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TseI	GCWGC	2 cut(s)	13, 210
TspDTI	ATGAA	1 cut(s)	356
TspMI	CCCGGG	1 cut(s)	193
Vha464I	CTTAAG	1 cut(s)	383
XapI	RAATTY	1 cut(s)	398
XceI	RCATGY	1 cut(s)	300
XmaI	CCCGGG	1 cut(s)	193
XmnI	GAANNNNTTC	1 cut(s)	523
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.