FvH4_6g53561

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017134
Physical Location & Seq
Forward (+)
39234269 .. 39236774
2506 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53561.t1

Sequence Viewer

Length: 543 bp
ATGGCTACTGGGAGCTCAGAAATGCTATCAAGGGAGCAATTGCTCCATCTCTTTGATCGATTCGCATTCCTTACCTCTCAGCCTGAAGTGAAGAAAAGAATTGCAGATGGGGTTGAGGATAAACAGGAAGCTGTAGCTGTGACCACTGCCATCCAAGAAGAGATATTTGTGGAAATGGGTATTGATCCAAGGTTTGGCATATCATGCCTGGGAAAGGTGAATTTGAAGTACGAGAATGATCAGGATATGATGATTCGCTTCTATAAGTTCATTGAAAGGGAAGAGTTGGCCTGTGATGAAGCTGAGCTTGGAGCAAATGAGTTTGCTGAAAGGATGCAGATTCAAGAGAAACTACATGAACAGCAACTGGAGATGCTAAAGCACATGCGCAAATATCCCCTGGATGATCAGTCTGCAATCCTTGAGAAGTTGCGCCAGCAGATGGAAATTGGCAACTTTGAGGATGCTGCATCAGGATTGTCATCAGAACAGATTCAGGAGATTGTTCGAAGGAGGGTGTCACCTTTATTTAACCCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

20.89

Weight (kDa)

4.85

Isoelectric Point (pI)

57.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017134)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27050
fragaria_vesca FvH4_6g53561
malus_domestica MD09G1010400.v1.1 MD16G1254400.v1.1
prunus_persica Prupe.3G306700_v2.0.a1
pyrus_communis pycom111g00830
rosa_chinensis RchiOBHm_Chr2g0175601
rosa_laevigata RLG00000022343
rosa_multiflora Rmu_sc0000998.1_g000022 Rmu_sc0012222.1_g000001
rosa_rugosa Rorug02G0586600
rosa_samantha Rh2CG639800
rosa_wichuraiana Rw2G054590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 389
AccB7I CCANNNNNTGG 2 cut(s) 194, 442
AclWI GGATC 1 cut(s) 179
AcsI RAATTY 1 cut(s) 220
AcuI CTGAAG 1 cut(s) 105
AfaI GTAC 1 cut(s) 230
AfiI CCNNNNNNNGG 3 cut(s) 194, 214, 442
AgsI TTSAA 3 cut(s) 226, 275, 344
AjnI CCWGG 2 cut(s) 207, 399
AjuI GAANNNNNNNTTGG 2 cut(s) 291, 323
AluBI AGCT 5 cut(s) 15, 131, 137, 302, 307
AluI AGCT 5 cut(s) 15, 131, 137, 302, 307
Alw21I GWGCWC 1 cut(s) 17
AlwI GGATC 1 cut(s) 179
AlwNI CAGNNNCTG 1 cut(s) 367
AoxI GGCC 1 cut(s) 288
ApeKI GCWGC 1 cut(s) 467
ApoI RAATTY 1 cut(s) 220
Asp700I GAANNNNTTC 1 cut(s) 492
AspLEI GCGC 2 cut(s) 390, 435
AsuHPI GGTGA 2 cut(s) 229, 513
AsuII TTCGAA 1 cut(s) 508
BanII GRGCYC 1 cut(s) 17
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 1 cut(s) 454
BccI CCATC 4 cut(s) 54, 101, 158, 436
BciT130I CCWGG 2 cut(s) 209, 401
BclI TGATCA 2 cut(s) 238, 406
BfmI CTRYAG 1 cut(s) 132
BisI GCNGC 1 cut(s) 468
BlpI GCTNAGC 1 cut(s) 303
BlsI GCNGC 1 cut(s) 469
Bme1390I CCNGG 2 cut(s) 209, 401
BmrFI CCNGG 2 cut(s) 209, 401
BmrI ACTGGG 1 cut(s) 18
BmsI GCATC 4 cut(s) 324, 363, 454, 479
BmuI ACTGGG 1 cut(s) 18
BpmI CTGGAG 1 cut(s) 389
Bpu1102I GCTNAGC 1 cut(s) 303
Bpu14I TTCGAA 1 cut(s) 508
BpuEI CTTGAG 1 cut(s) 443
Bsa29I ATCGAT 1 cut(s) 58
BsaBI GATNNNNATC 1 cut(s) 481
BsaJI CCNNGG 3 cut(s) 188, 208, 399
Bsc4I CCNNNNNNNGG 3 cut(s) 194, 214, 442
Bse1I ACTGG 2 cut(s) 13, 372
Bse8I GATNNNNATC 1 cut(s) 481
BseBI CCWGG 2 cut(s) 209, 401
BseCI ATCGAT 1 cut(s) 58
BseDI CCNNGG 3 cut(s) 188, 208, 399
BseGI GGATG 4 cut(s) 150, 339, 409, 469
BseJI GATNNNNATC 1 cut(s) 481
BseLI CCNNNNNNNGG 3 cut(s) 194, 214, 442
BseMII CTCAG 3 cut(s) 30, 92, 294
BseNI ACTGG 2 cut(s) 13, 372
BseXI GCAGC 1 cut(s) 454
BshFI GGCC 1 cut(s) 290
BshVI ATCGAT 1 cut(s) 58
BsiHKAI GWGCWC 1 cut(s) 17
BslI CCNNNNNNNGG 3 cut(s) 194, 214, 442
BsmI GAATGC 1 cut(s) 65
BsnI GGCC 1 cut(s) 290
Bsp119I TTCGAA 1 cut(s) 508
Bsp1286I GDGCHC 1 cut(s) 17
Bsp143I GATC 4 cut(s) 55, 184, 238, 406
Bsp1720I GCTNAGC 1 cut(s) 303
BspANI GGCC 1 cut(s) 290
BspCNI CTCAG 3 cut(s) 29, 91, 295
BspDI ATCGAT 1 cut(s) 58
BspPI GGATC 1 cut(s) 179
BspT104I TTCGAA 1 cut(s) 508
BsrI ACTGG 2 cut(s) 13, 372
BssECI CCNNGG 3 cut(s) 188, 208, 399
BssMI GATC 4 cut(s) 55, 184, 238, 406
BssT1I CCWWGG 1 cut(s) 188
Bst2UI CCWGG 2 cut(s) 209, 401
Bst6I CTCTTC 2 cut(s) 153, 276
BstAPI GCANNNNNTGC 1 cut(s) 204
BstBI TTCGAA 1 cut(s) 508
BstC8I GCNNGC 1 cut(s) 437
BstDEI CTNAG 3 cut(s) 16, 78, 303
BstENI CCTNNNNNAGG 1 cut(s) 212
BstF5I GGATG 4 cut(s) 150, 339, 409, 469
BstHHI GCGC 2 cut(s) 390, 435
BstKTI GATC 4 cut(s) 58, 187, 241, 409
BstMBI GATC 4 cut(s) 55, 184, 238, 406
BstMWI GCNNNNNNNGC 1 cut(s) 204
BstNI CCWGG 2 cut(s) 209, 401
BstNSI RCATGY 1 cut(s) 388
BstSCI CCNGG 2 cut(s) 207, 399
BstSFI CTRYAG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 454
Bsu15I ATCGAT 1 cut(s) 58
BsuRI GGCC 1 cut(s) 290
BsuTUI ATCGAT 1 cut(s) 58
BtsCI GGATG 4 cut(s) 150, 339, 409, 469
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 437
CaiI CAGNNNCTG 1 cut(s) 367
CfoI GCGC 2 cut(s) 390, 435
ClaI ATCGAT 1 cut(s) 58
Csp6I GTAC 1 cut(s) 229
CviAII CATG 3 cut(s) 204, 356, 385
CviJI RGCY 8 cut(s) 5, 15, 82, 131, 137, 290, 302, 307
CviKI_1 RGCY 8 cut(s) 5, 15, 82, 131, 137, 290, 302, 307
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 3 cut(s) 16, 78, 303
DpnI GATC 4 cut(s) 57, 186, 240, 408
DpnII GATC 4 cut(s) 55, 184, 238, 406
Eam1104I CTCTTC 2 cut(s) 153, 276
EarI CTCTTC 2 cut(s) 153, 276
Ecl136II GAGCTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 188
Eco24I GRGCYC 1 cut(s) 17
Eco53kI GAGCTC 1 cut(s) 15
Eco57I CTGAAG 1 cut(s) 105
EcoICRI GAGCTC 1 cut(s) 15
EcoNI CCTNNNNNAGG 1 cut(s) 212
EcoRII CCWGG 2 cut(s) 207, 399
EcoT14I CCWWGG 1 cut(s) 188
EcoT38I GRGCYC 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 3 cut(s) 207, 359, 388
FaiI YATR 6 cut(s) 200, 205, 248, 264, 357, 386
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FatI CATG 3 cut(s) 203, 355, 384
FbaI TGATCA 2 cut(s) 238, 406
Fnu4HI GCNGC 1 cut(s) 468
FokI GGATG 4 cut(s) 137, 346, 416, 476
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 468
FspI TGCGCA 1 cut(s) 389
GlaI GCGC 2 cut(s) 389, 434
GluI GCNGC 1 cut(s) 468
GsuI CTGGAG 1 cut(s) 389
HaeIII GGCC 1 cut(s) 290
HhaI GCGC 2 cut(s) 390, 435
Hin1II CATG 3 cut(s) 207, 359, 388
Hin6I GCGC 2 cut(s) 388, 433
HinP1I GCGC 2 cut(s) 388, 433
HinfI GANTC 4 cut(s) 60, 253, 340, 493
HphI GGTGA 2 cut(s) 229, 513
Hpy188I TCNGA 2 cut(s) 19, 487
Hpy188III TCNNGA 4 cut(s) 242, 344, 474, 497
HpyAV CCTTC 1 cut(s) 504
HpyCH4V TGCA 4 cut(s) 104, 337, 416, 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 204
HpyF3I CTNAG 3 cut(s) 16, 78, 303
Hsp92II CATG 3 cut(s) 207, 359, 388
HspAI GCGC 2 cut(s) 388, 433
Ksp22I TGATCA 2 cut(s) 238, 406
Kzo9I GATC 4 cut(s) 55, 184, 238, 406
LmnI GCTCC 4 cut(s) 12, 34, 48, 311
Lsp1109I GCAGC 1 cut(s) 454
LweI GCATC 4 cut(s) 324, 363, 454, 479
MaeIII GTNAC 2 cut(s) 139, 519
MalI GATC 4 cut(s) 57, 186, 240, 408
MboI GATC 4 cut(s) 55, 184, 238, 406
MboII GAAGA 3 cut(s) 103, 170, 293
MfeI CAATTG 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 4 cut(s) 38, 99, 220, 447
MnlI CCTC 4 cut(s) 85, 109, 454, 507
MroXI GAANNNNTTC 1 cut(s) 492
MseI TTAA 1 cut(s) 531
MspR9I CCNGG 2 cut(s) 209, 401
MunI CAATTG 1 cut(s) 38
Mva1269I GAATGC 1 cut(s) 65
MvaI CCWGG 2 cut(s) 209, 401
MwoI GCNNNNNNNGC 1 cut(s) 204
NdeII GATC 4 cut(s) 55, 184, 238, 406
NlaIII CATG 3 cut(s) 207, 359, 388
NmuCI GTSAC 2 cut(s) 139, 519
NsbI TGCGCA 1 cut(s) 389
NspI RCATGY 1 cut(s) 388
NspV TTCGAA 1 cut(s) 508
PctI GAATGC 1 cut(s) 65
PdmI GAANNNNTTC 1 cut(s) 492
PfeI GAWTC 4 cut(s) 60, 253, 340, 493
PflMI CCANNNNNTGG 2 cut(s) 194, 442
PkrI GCNGC 1 cut(s) 469
Psp124BI GAGCTC 1 cut(s) 17
Psp6I CCWGG 2 cut(s) 207, 399
PspGI CCWGG 2 cut(s) 207, 399
PstNI CAGNNNCTG 1 cut(s) 367
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
SacI GAGCTC 1 cut(s) 17
SaqAI TTAA 1 cut(s) 531
SatI GCNGC 1 cut(s) 468
Sau3AI GATC 4 cut(s) 55, 184, 238, 406
ScrFI CCNGG 2 cut(s) 209, 401
SduI GDGCHC 1 cut(s) 17
SetI ASST 9 cut(s) 17, 77, 133, 139, 194, 219, 304, 309, 526
SfaNI GCATC 4 cut(s) 324, 363, 454, 479
SfcI CTRYAG 1 cut(s) 132
SfuI TTCGAA 1 cut(s) 508
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
Sse9I AATT 4 cut(s) 38, 99, 220, 447
SstI GAGCTC 1 cut(s) 17
StyD4I CCNGG 2 cut(s) 207, 399
StyI CCWWGG 1 cut(s) 188
TaqI TCGA 2 cut(s) 58, 508
TasI AATT 4 cut(s) 38, 99, 220, 447
TfiI GAWTC 4 cut(s) 60, 253, 340, 493
Tru1I TTAA 1 cut(s) 531
Tru9I TTAA 1 cut(s) 531
TscAI CASTG 1 cut(s) 151
TseFI GTSAC 2 cut(s) 139, 519
TseI GCWGC 1 cut(s) 467
Tsp45I GTSAC 2 cut(s) 139, 519
TspDTI ATGAA 3 cut(s) 259, 312, 372
TspRI CASTG 1 cut(s) 151
Van91I CCANNNNNTGG 2 cut(s) 194, 442
XagI CCTNNNNNAGG 1 cut(s) 212
XapI RAATTY 1 cut(s) 220
XceI RCATGY 1 cut(s) 388
XmnI GAANNNNTTC 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.