Prupe.3G306700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0017134
Physical Location & Seq
Forward (+)
26804193 .. 26806454
2262 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G306700.1

Sequence Viewer

Length: 552 bp
ATGGGTTCGCAGTTGCAGAGCTCCTCAGAAATGCTGTCAAGGGAACAGTTGCTTCATCTCTTCGATCGATTCTCTTTCCTCACCTCTCAGCCCGATGTGAAGAAAAGAATCGCTGATGGTGTTGACGACAAACAGGAAGCTGTAGCCATAACCACAGCCATCCAGGAAGAGATATTTCTAGAGATGGGGATTGATCCAAGGTTTGGCATATCATCCCTGGGAAAGGTGAATGAAAAATATGAGAATGATCAGGATATGATGATCCGCTTTTATAAGTTCATTGCAAGGGAGGAGATGGCCTGTGATGAAGCTGAGCTTGGAGCAGATGAATTTGCGGAAAGGATGCATACTCAAGAAAAATTACAGGAGCAGCAACTGGAGATGCTAAAGCACATGCGGAAATTTCCCCTGGATGATCAATCTGCAATCCTTGAGAAGCTGCGTCAGCAGATGGAAAATGCCGATTTTGACGGTGCTGCATCAGTTTTGTCTTCAGAGCAGATTCAAGAGATTGTTCGGAGGAGGGTGTCTCCTTTATTTAAGCCAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

21.24

Weight (kDa)

4.83

Isoelectric Point (pI)

59.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017134)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27050
fragaria_vesca FvH4_6g53561
malus_domestica MD09G1010400.v1.1 MD16G1254400.v1.1
prunus_persica Prupe.3G306700_v2.0.a1
pyrus_communis pycom111g00830
rosa_chinensis RchiOBHm_Chr2g0175601
rosa_laevigata RLG00000022343
rosa_multiflora Rmu_sc0000998.1_g000022 Rmu_sc0012222.1_g000001
rosa_rugosa Rorug02G0586600
rosa_samantha Rh2CG639800
rosa_wichuraiana Rw2G054590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 273
AccB7I CCANNNNNTGG 1 cut(s) 203
AciI CCGC 3 cut(s) 265, 335, 397
AclWI GGATC 2 cut(s) 188, 256
AcsI RAATTY 2 cut(s) 329, 401
AcuI CTGAAG 1 cut(s) 477
AfiI CCNNNNNNNGG 2 cut(s) 203, 223
AgsI TTSAA 1 cut(s) 506
AjnI CCWGG 3 cut(s) 162, 216, 408
AjuI GAANNNNNNNTTGG 2 cut(s) 300, 332
AluBI AGCT 5 cut(s) 21, 140, 311, 316, 439
AluI AGCT 5 cut(s) 21, 140, 311, 316, 439
Alw21I GWGCWC 1 cut(s) 23
Alw26I GTCTC 1 cut(s) 534
AlwI GGATC 2 cut(s) 188, 256
AlwNI CAGNNNCTG 1 cut(s) 376
AoxI GGCC 1 cut(s) 297
ApeKI GCWGC 3 cut(s) 370, 439, 476
ApoI RAATTY 2 cut(s) 329, 401
AsuHPI GGTGA 2 cut(s) 73, 238
BanII GRGCYC 1 cut(s) 23
BbsI GAAGAC 1 cut(s) 483
Bbv12I GWGCWC 1 cut(s) 23
BbvI GCAGC 3 cut(s) 382, 426, 463
BccI CCATC 5 cut(s) 110, 167, 178, 289, 445
BciT130I CCWGG 3 cut(s) 164, 218, 410
BclI TGATCA 2 cut(s) 247, 415
BcoDI GTCTC 1 cut(s) 534
BfaI CTAG 1 cut(s) 179
BfmI CTRYAG 1 cut(s) 141
BisI GCNGC 3 cut(s) 371, 440, 477
BlpI GCTNAGC 1 cut(s) 312
BlsI GCNGC 3 cut(s) 372, 441, 478
Bme1390I CCNGG 3 cut(s) 164, 218, 410
BmrFI CCNGG 3 cut(s) 164, 218, 410
BmsI GCATC 3 cut(s) 333, 372, 488
BpiI GAAGAC 1 cut(s) 483
BplI GAGNNNNNCTC 2 cut(s) 514, 546
BpmI CTGGAG 1 cut(s) 398
Bpu1102I GCTNAGC 1 cut(s) 312
BpuEI CTTGAG 2 cut(s) 336, 452
Bsa29I ATCGAT 1 cut(s) 67
BsaJI CCNNGG 5 cut(s) 197, 216, 217, 408, 545
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 223
Bse1I ACTGG 1 cut(s) 381
Bse3DI GCAATG 1 cut(s) 279
BseBI CCWGG 3 cut(s) 164, 218, 410
BseCI ATCGAT 1 cut(s) 67
BseDI CCNNGG 5 cut(s) 197, 216, 217, 408, 545
BseGI GGATG 4 cut(s) 159, 212, 348, 418
BseLI CCNNNNNNNGG 2 cut(s) 203, 223
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 3 cut(s) 39, 101, 303
BseNI ACTGG 1 cut(s) 381
BseRI GAGGAG 3 cut(s) 13, 305, 535
BseXI GCAGC 3 cut(s) 382, 426, 463
Bsh1285I CGRYCG 1 cut(s) 67
BshFI GGCC 1 cut(s) 299
BshVI ATCGAT 1 cut(s) 67
BsiEI CGRYCG 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 23
BslI CCNNNNNNNGG 2 cut(s) 203, 223
BsmAI GTCTC 1 cut(s) 534
BsnI GGCC 1 cut(s) 299
Bsp1286I GDGCHC 1 cut(s) 23
Bsp143I GATC 5 cut(s) 64, 193, 247, 261, 415
Bsp1720I GCTNAGC 1 cut(s) 312
BspACI CCGC 3 cut(s) 265, 335, 397
BspANI GGCC 1 cut(s) 299
BspCNI CTCAG 3 cut(s) 38, 100, 304
BspDI ATCGAT 1 cut(s) 67
BspPI GGATC 2 cut(s) 188, 256
BsrDI GCAATG 1 cut(s) 279
BsrI ACTGG 1 cut(s) 381
BssECI CCNNGG 5 cut(s) 197, 216, 217, 408, 545
BssMI GATC 5 cut(s) 64, 193, 247, 261, 415
BssT1I CCWWGG 2 cut(s) 197, 545
Bst2UI CCWGG 3 cut(s) 164, 218, 410
Bst4CI ACNGT 2 cut(s) 48, 473
Bst6I CTCTTC 2 cut(s) 65, 162
BstDEI CTNAG 3 cut(s) 25, 87, 312
BstENI CCTNNNNNAGG 1 cut(s) 221
BstF5I GGATG 4 cut(s) 159, 212, 348, 418
BstKTI GATC 5 cut(s) 67, 196, 250, 264, 418
BstMAI GTCTC 1 cut(s) 534
BstMBI GATC 5 cut(s) 64, 193, 247, 261, 415
BstMCI CGRYCG 1 cut(s) 67
BstMWI GCNNNNNNNGC 1 cut(s) 445
BstNI CCWGG 3 cut(s) 164, 218, 410
BstNSI RCATGY 1 cut(s) 397
BstSCI CCNGG 3 cut(s) 162, 216, 408
BstSFI CTRYAG 1 cut(s) 141
BstV1I GCAGC 3 cut(s) 382, 426, 463
BstV2I GAAGAC 1 cut(s) 483
Bsu15I ATCGAT 1 cut(s) 67
BsuRI GGCC 1 cut(s) 299
BsuTUI ATCGAT 1 cut(s) 67
BtsCI GGATG 4 cut(s) 159, 212, 348, 418
CaiI CAGNNNCTG 1 cut(s) 376
ClaI ATCGAT 1 cut(s) 67
CseI GACGC 1 cut(s) 431
CviAII CATG 1 cut(s) 394
DdeI CTNAG 3 cut(s) 25, 87, 312
DpnI GATC 5 cut(s) 66, 195, 249, 263, 417
DpnII GATC 5 cut(s) 64, 193, 247, 261, 415
Eam1104I CTCTTC 2 cut(s) 65, 162
EarI CTCTTC 2 cut(s) 65, 162
Ecl136II GAGCTC 1 cut(s) 21
Eco130I CCWWGG 2 cut(s) 197, 545
Eco24I GRGCYC 1 cut(s) 23
Eco53kI GAGCTC 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 477
EcoICRI GAGCTC 1 cut(s) 21
EcoNI CCTNNNNNAGG 1 cut(s) 221
EcoRII CCWGG 3 cut(s) 162, 216, 408
EcoT14I CCWWGG 2 cut(s) 197, 545
EcoT22I ATGCAT 1 cut(s) 348
EcoT38I GRGCYC 1 cut(s) 23
ErhI CCWWGG 2 cut(s) 197, 545
FaeI CATG 1 cut(s) 397
FaiI YATR 7 cut(s) 149, 209, 240, 257, 273, 348, 395
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FatI CATG 1 cut(s) 393
FbaI TGATCA 2 cut(s) 247, 415
Fnu4HI GCNGC 3 cut(s) 371, 440, 477
FokI GGATG 4 cut(s) 146, 199, 355, 425
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 3 cut(s) 371, 440, 477
FspBI CTAG 1 cut(s) 179
GluI GCNGC 3 cut(s) 371, 440, 477
GsuI CTGGAG 1 cut(s) 398
HaeIII GGCC 1 cut(s) 299
HgaI GACGC 1 cut(s) 431
Hin1II CATG 1 cut(s) 397
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HinfI GANTC 3 cut(s) 69, 108, 502
HphI GGTGA 2 cut(s) 73, 238
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 3 cut(s) 28, 496, 519
Hpy188III TCNNGA 4 cut(s) 179, 251, 353, 506
Hpy8I GTNNAC 1 cut(s) 124
HpyCH4III ACNGT 2 cut(s) 48, 473
HpyCH4V TGCA 5 cut(s) 16, 284, 346, 425, 479
HpyF10VI GCNNNNNNNGC 1 cut(s) 445
HpyF3I CTNAG 3 cut(s) 25, 87, 312
Hsp92II CATG 1 cut(s) 397
Ksp22I TGATCA 2 cut(s) 247, 415
Kzo9I GATC 5 cut(s) 64, 193, 247, 261, 415
LmnI GCTCC 3 cut(s) 26, 320, 367
Lsp1109I GCAGC 3 cut(s) 382, 426, 463
LweI GCATC 3 cut(s) 333, 372, 488
MaeI CTAG 1 cut(s) 179
MalI GATC 5 cut(s) 66, 195, 249, 263, 417
MboI GATC 5 cut(s) 64, 193, 247, 261, 415
MboII GAAGA 4 cut(s) 52, 112, 179, 483
MhlI GDGCHC 1 cut(s) 23
MluCI AATT 3 cut(s) 329, 359, 401
MnlI CCTC 6 cut(s) 34, 89, 94, 283, 513, 516
Mph1103I ATGCAT 1 cut(s) 348
MseI TTAA 1 cut(s) 540
MspR9I CCNGG 3 cut(s) 164, 218, 410
MvaI CCWGG 3 cut(s) 164, 218, 410
MwoI GCNNNNNNNGC 1 cut(s) 445
NdeII GATC 5 cut(s) 64, 193, 247, 261, 415
NlaIII CATG 1 cut(s) 397
NsiI ATGCAT 1 cut(s) 348
NspI RCATGY 1 cut(s) 397
PasI CCCWGGG 1 cut(s) 217
PfeI GAWTC 3 cut(s) 69, 108, 502
PflMI CCANNNNNTGG 1 cut(s) 203
PfoI TCCNGGA 1 cut(s) 162
PkrI GCNGC 3 cut(s) 372, 441, 478
Ple19I CGATCG 1 cut(s) 67
PsiI TTATAA 1 cut(s) 273
Psp124BI GAGCTC 1 cut(s) 23
Psp6I CCWGG 3 cut(s) 162, 216, 408
PspGI CCWGG 3 cut(s) 162, 216, 408
PstNI CAGNNNCTG 1 cut(s) 376
PvuI CGATCG 1 cut(s) 67
SacI GAGCTC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 540
SatI GCNGC 3 cut(s) 371, 440, 477
Sau3AI GATC 5 cut(s) 64, 193, 247, 261, 415
ScrFI CCNGG 3 cut(s) 164, 218, 410
SduI GDGCHC 1 cut(s) 23
SetI ASST 9 cut(s) 23, 86, 142, 203, 228, 313, 318, 441, 551
SfaNI GCATC 3 cut(s) 333, 372, 488
SfcI CTRYAG 1 cut(s) 141
SmlI CTYRAG 2 cut(s) 351, 431
SmoI CTYRAG 2 cut(s) 351, 431
Sse9I AATT 3 cut(s) 329, 359, 401
SsiI CCGC 3 cut(s) 265, 335, 397
SspMI CTAG 1 cut(s) 179
SstI GAGCTC 1 cut(s) 23
StyD4I CCNGG 3 cut(s) 162, 216, 408
StyI CCWWGG 2 cut(s) 197, 545
TaaI ACNGT 2 cut(s) 48, 473
TaqI TCGA 2 cut(s) 63, 67
TasI AATT 3 cut(s) 329, 359, 401
TfiI GAWTC 3 cut(s) 69, 108, 502
Tru1I TTAA 1 cut(s) 540
Tru9I TTAA 1 cut(s) 540
TseI GCWGC 3 cut(s) 370, 439, 476
TspDTI ATGAA 5 cut(s) 44, 246, 268, 321, 342
Van91I CCANNNNNTGG 1 cut(s) 203
XagI CCTNNNNNAGG 1 cut(s) 221
XapI RAATTY 2 cut(s) 329, 401
XbaI TCTAGA 1 cut(s) 178
XceI RCATGY 1 cut(s) 397
XspI CTAG 1 cut(s) 179
Zsp2I ATGCAT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.