Rh2CG639800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0017134
Physical Location & Seq
Forward (+)
81021528 .. 81023978
2451 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG639800.1

Sequence Viewer

Length: 543 bp
ATGTCTACTGGGAGCTCTGAGATGCTGTCAAGGGAGCAATTGCTTCATCTCTTTGATCGGTTCGCCTTCCTTACCTCTCAGCCTGACGTGAAGAAAAGAATTGCAGATGGGGTTGAGGATAAGCAGGAAGCTGTAGCTGTGACCACTGCTATCCAAGAAGAGATATTTCTGGAAATGGGTATTGATCCAAGGTTTGGCATATCATGCCTGGGAAAGGTGAATATAAACTATGAGCATGATCAGGATATGATGATTCGCTTCTATAAGTTCATTGCAAGGGAAGAGTTGGCCTGTGATGAAGGCGAGCTTGGAGCAGATGAGTTTGCTGAAAGGATGCAGATTCAAGAAAAAATGCAGCAGCAGCAACTGGAGATGCTGAAGCAAATGCGCAAATTTCCCCTAGATGATCAATCTGCAGTCCTAGAAAAGTTGCGCCAGCAGATGGAAATCGCCAACTTTGAGGATGCTGCATCAGTATTGTCATGGGAGCAGATTCAGGAGATTGTTCAAAGGAGAGTATCACCTTTATTTAACCCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

20.94

Weight (kDa)

4.68

Isoelectric Point (pI)

56.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017134)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27050
fragaria_vesca FvH4_6g53561
malus_domestica MD09G1010400.v1.1 MD16G1254400.v1.1
prunus_persica Prupe.3G306700_v2.0.a1
pyrus_communis pycom111g00830
rosa_chinensis RchiOBHm_Chr2g0175601
rosa_laevigata RLG00000022343
rosa_multiflora Rmu_sc0000998.1_g000022 Rmu_sc0012222.1_g000001
rosa_rugosa Rorug02G0586600
rosa_samantha Rh2CG639800
rosa_wichuraiana Rw2G054590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 389
AccB7I CCANNNNNTGG 2 cut(s) 194, 442
AccI GTMKAC 1 cut(s) 5
AclWI GGATC 1 cut(s) 179
AcsI RAATTY 1 cut(s) 392
AcuI CTGAAG 1 cut(s) 398
AfiI CCNNNNNNNGG 3 cut(s) 194, 214, 442
AgsI TTSAA 2 cut(s) 344, 509
AjiI CACGTC 1 cut(s) 88
AjnI CCWGG 1 cut(s) 207
AjuI GAANNNNNNNTTGG 2 cut(s) 291, 323
AluBI AGCT 4 cut(s) 15, 131, 137, 307
AluI AGCT 4 cut(s) 15, 131, 137, 307
Alw21I GWGCWC 1 cut(s) 17
AlwI GGATC 1 cut(s) 179
AlwNI CAGNNNCTG 1 cut(s) 367
AoxI GGCC 1 cut(s) 288
ApeKI GCWGC 4 cut(s) 355, 358, 361, 467
ApoI RAATTY 1 cut(s) 392
AspLEI GCGC 2 cut(s) 390, 435
AsuHPI GGTGA 2 cut(s) 229, 513
BanII GRGCYC 1 cut(s) 17
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 4 cut(s) 367, 370, 373, 454
BccI CCATC 2 cut(s) 101, 436
BciT130I CCWGG 1 cut(s) 209
BclI TGATCA 2 cut(s) 238, 406
BfaI CTAG 2 cut(s) 401, 422
BfmI CTRYAG 2 cut(s) 132, 414
BisI GCNGC 4 cut(s) 356, 359, 362, 468
BlsI GCNGC 4 cut(s) 357, 360, 363, 469
Bme1390I CCNGG 1 cut(s) 209
BmgBI CACGTC 1 cut(s) 88
BmrFI CCNGG 1 cut(s) 209
BmrI ACTGGG 1 cut(s) 18
BmsI GCATC 5 cut(s) 12, 324, 363, 454, 479
BmuI ACTGGG 1 cut(s) 18
BpmI CTGGAG 1 cut(s) 389
BsaBI GATNNNNATC 1 cut(s) 446
BsaJI CCNNGG 2 cut(s) 188, 208
Bsc4I CCNNNNNNNGG 3 cut(s) 194, 214, 442
Bse1I ACTGG 2 cut(s) 13, 372
Bse3DI GCAATG 1 cut(s) 270
Bse8I GATNNNNATC 1 cut(s) 446
BseBI CCWGG 1 cut(s) 209
BseDI CCNNGG 2 cut(s) 188, 208
BseGI GGATG 2 cut(s) 339, 469
BseJI GATNNNNATC 1 cut(s) 446
BseLI CCNNNNNNNGG 3 cut(s) 194, 214, 442
BseMI GCAATG 1 cut(s) 270
BseMII CTCAG 2 cut(s) 9, 92
BseNI ACTGG 2 cut(s) 13, 372
BseXI GCAGC 4 cut(s) 367, 370, 373, 454
BshFI GGCC 1 cut(s) 290
BsiHKAI GWGCWC 1 cut(s) 17
BslI CCNNNNNNNGG 3 cut(s) 194, 214, 442
BsnI GGCC 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 17
Bsp143I GATC 4 cut(s) 55, 184, 238, 406
BspANI GGCC 1 cut(s) 290
BspCNI CTCAG 2 cut(s) 10, 91
BspMAI CTGCAG 1 cut(s) 418
BspPI GGATC 1 cut(s) 179
BsrDI GCAATG 1 cut(s) 270
BsrI ACTGG 2 cut(s) 13, 372
BssECI CCNNGG 2 cut(s) 188, 208
BssMI GATC 4 cut(s) 55, 184, 238, 406
BssT1I CCWWGG 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 209
Bst6I CTCTTC 2 cut(s) 153, 276
BstAPI GCANNNNNTGC 1 cut(s) 204
BstC8I GCNNGC 2 cut(s) 305, 437
BstDEI CTNAG 2 cut(s) 18, 78
BstENI CCTNNNNNAGG 1 cut(s) 212
BstF5I GGATG 2 cut(s) 339, 469
BstHHI GCGC 2 cut(s) 390, 435
BstKTI GATC 4 cut(s) 58, 187, 241, 409
BstMBI GATC 4 cut(s) 55, 184, 238, 406
BstMWI GCNNNNNNNGC 2 cut(s) 204, 361
BstNI CCWGG 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 207
BstSFI CTRYAG 2 cut(s) 132, 414
BstV1I GCAGC 4 cut(s) 367, 370, 373, 454
BsuRI GGCC 1 cut(s) 290
BtrI CACGTC 1 cut(s) 88
BtsCI GGATG 2 cut(s) 339, 469
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 144
Cac8I GCNNGC 2 cut(s) 305, 437
CaiI CAGNNNCTG 1 cut(s) 367
CfoI GCGC 2 cut(s) 390, 435
CviAII CATG 3 cut(s) 204, 236, 483
CviJI RGCY 6 cut(s) 15, 82, 131, 137, 290, 307
CviKI_1 RGCY 6 cut(s) 15, 82, 131, 137, 290, 307
DdeI CTNAG 2 cut(s) 18, 78
DpnI GATC 4 cut(s) 57, 186, 240, 408
DpnII GATC 4 cut(s) 55, 184, 238, 406
Eam1104I CTCTTC 2 cut(s) 153, 276
EarI CTCTTC 2 cut(s) 153, 276
Ecl136II GAGCTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 188
Eco24I GRGCYC 1 cut(s) 17
Eco53kI GAGCTC 1 cut(s) 15
Eco57I CTGAAG 1 cut(s) 398
EcoICRI GAGCTC 1 cut(s) 15
EcoNI CCTNNNNNAGG 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 207
EcoT14I CCWWGG 1 cut(s) 188
EcoT38I GRGCYC 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 3 cut(s) 207, 239, 486
FaiI YATR 8 cut(s) 200, 205, 224, 231, 237, 248, 264, 484
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FatI CATG 3 cut(s) 203, 235, 482
FbaI TGATCA 2 cut(s) 238, 406
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 4 cut(s) 356, 359, 362, 468
FokI GGATG 2 cut(s) 346, 476
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 4 cut(s) 356, 359, 362, 468
FspBI CTAG 2 cut(s) 401, 422
FspI TGCGCA 1 cut(s) 389
GlaI GCGC 2 cut(s) 389, 434
GluI GCNGC 4 cut(s) 356, 359, 362, 468
GsuI CTGGAG 1 cut(s) 389
HaeIII GGCC 1 cut(s) 290
HhaI GCGC 2 cut(s) 390, 435
Hin1II CATG 3 cut(s) 207, 239, 486
Hin6I GCGC 2 cut(s) 388, 433
HinP1I GCGC 2 cut(s) 388, 433
HinfI GANTC 3 cut(s) 253, 340, 493
HphI GGTGA 2 cut(s) 229, 513
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 4 cut(s) 170, 242, 344, 497
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 2 cut(s) 76, 293
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 6 cut(s) 104, 275, 337, 355, 416, 470
HpyF10VI GCNNNNNNNGC 2 cut(s) 204, 361
HpyF3I CTNAG 2 cut(s) 18, 78
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 3 cut(s) 207, 239, 486
HspAI GCGC 2 cut(s) 388, 433
Ksp22I TGATCA 2 cut(s) 238, 406
Kzo9I GATC 4 cut(s) 55, 184, 238, 406
LmnI GCTCC 4 cut(s) 12, 34, 311, 487
Lsp1109I GCAGC 4 cut(s) 367, 370, 373, 454
LweI GCATC 5 cut(s) 12, 324, 363, 454, 479
MaeI CTAG 2 cut(s) 401, 422
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 139
MalI GATC 4 cut(s) 57, 186, 240, 408
MboI GATC 4 cut(s) 55, 184, 238, 406
MboII GAAGA 3 cut(s) 103, 170, 293
MfeI CAATTG 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 3 cut(s) 38, 99, 392
MnlI CCTC 3 cut(s) 85, 109, 454
MseI TTAA 1 cut(s) 531
MspR9I CCNGG 1 cut(s) 209
MunI CAATTG 1 cut(s) 38
MvaI CCWGG 1 cut(s) 209
MwoI GCNNNNNNNGC 2 cut(s) 204, 361
NdeII GATC 4 cut(s) 55, 184, 238, 406
NlaIII CATG 3 cut(s) 207, 239, 486
NmuCI GTSAC 1 cut(s) 139
NsbI TGCGCA 1 cut(s) 389
PfeI GAWTC 3 cut(s) 253, 340, 493
PflMI CCANNNNNTGG 2 cut(s) 194, 442
PkrI GCNGC 4 cut(s) 357, 360, 363, 469
Psp124BI GAGCTC 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 207
PspGI CCWGG 1 cut(s) 207
PstI CTGCAG 1 cut(s) 418
PstNI CAGNNNCTG 1 cut(s) 367
SacI GAGCTC 1 cut(s) 17
SaqAI TTAA 1 cut(s) 531
SatI GCNGC 4 cut(s) 356, 359, 362, 468
Sau3AI GATC 4 cut(s) 55, 184, 238, 406
ScrFI CCNGG 1 cut(s) 209
SduI GDGCHC 1 cut(s) 17
SetI ASST 9 cut(s) 17, 77, 90, 133, 139, 194, 219, 309, 526
SfaNI GCATC 5 cut(s) 12, 324, 363, 454, 479
SfcI CTRYAG 2 cut(s) 132, 414
Sse9I AATT 3 cut(s) 38, 99, 392
SspMI CTAG 2 cut(s) 401, 422
SstI GAGCTC 1 cut(s) 17
StyD4I CCNGG 1 cut(s) 207
StyI CCWWGG 1 cut(s) 188
TaiI ACGT 1 cut(s) 90
TasI AATT 3 cut(s) 38, 99, 392
TfiI GAWTC 3 cut(s) 253, 340, 493
Tru1I TTAA 1 cut(s) 531
Tru9I TTAA 1 cut(s) 531
TscAI CASTG 1 cut(s) 151
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 4 cut(s) 355, 358, 361, 467
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 3 cut(s) 35, 259, 312
TspRI CASTG 1 cut(s) 151
Van91I CCANNNNNTGG 2 cut(s) 194, 442
XagI CCTNNNNNAGG 1 cut(s) 212
XapI RAATTY 1 cut(s) 392
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 2 cut(s) 401, 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.