Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011047

Physical Location & Seq

Genomic Coordinates Reverse (-)

10471842 .. 10473952

Gene Structure 2111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G28150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGAAATCATCGTCATCGATTTTTCGTGAAACTTCAGAGAAAAAATCAGAGAGATGGATGATGATGAACATTGGAAGATTTTCTCCATTTTTCTTGTCTTCCTTTTGTATAACTCTTTTCTTCACCGGTTTCTTTGTTTATCAGAATCCTTTTAAATCCATCGCTGATCAAAATGTTCTTTCTTTCCAACCTCAAATCGATCCTGAGTGTGATTTGTTCAAGGGACATTGGGTTCCAGACAAAAGAGGATCTTTATACACAAACTCGAGCTGTGCTACGATTCCCGACTCGAAGAACTGCATAAAACAAGGGAGACCCGACAAAGATTTCTTGTTCTGGAGATGGAAACCCGATGGTTGCGATCTTCCGAGGTTTAATCCAAAGGCGTTTCTCAGTATGGTTCGAGGGAAGAAGATGAATTTTATTGGTGATTCTGTGGCTAGGAACCATATGGAATCTCTTCTTTGCTTGTTGTCAATGGAAGAAACTCCTAAGGACATCTACAAGGATGGAGAAGATAGAAACAGGATTTGGTACTTTCCGAAGCACGATTTTACTCTCTCGACCTCGTGGACTAAGTTTCTTGTGGAGGAACGAGAGAGAAGAGATAGTAACAATACAGGTACTGGATTGTTTGATCTAGATATCGGCAAGATCGATGAAGGGTGGTTTAATGGTCTACCGAATACAGACATTGCTATTGTCTCGGCTGCTCATTGGTTCTTCAGACCTATATTTATACATAGAGGAGATGAGACACTGGGTTGCATTTACTGTAACTTACCAAACATGACTCAGATTAGCCCGGAAGAAGGGTTTAAGCTTGTTTACTCAGCTGTCCTTAGGCAAATCAATGAGTGTGAGATGTGTAAGAAAGATTTAGTGACGGTACTGAGGACTATTTCACCTGCGCATTTCGAGAATGGGACTTGGGACACCGGAGGAACTTGCAGCAGGACGAGTCCTTTCGGAGAAAACAAAATTGACCTGCAGAGCAATGAGATGAAGATCAGGAAATCTCAGATTGAACAGCTTGAAGGTATAACAAAACGAGGCAACAAAGCAAAGAAGTTTGCGGTATTGGATGTGACAAGGGTTATGCAGATGAGACCTGATGGGCATCCCAATGGTTACTGGGGAAATAAATGGATGAAAGGTTATAATGATTGCGTGCATTGGTGTTTGCCCGGGCCAATCGATGCGTGGAACGACTTTTTAATGGCGATAATTAGACAGTTAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

414

Amino Acids

47.97

Weight (kDa)

8.47

Isoelectric Point (pI)

38.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	69 - 121	2e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	122 - 408	7.2e-87	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28150
fragaria_vesca	FvH4_6g50300 FvH4_6g50320 FvH4_6g50320 FvH4_6g50320
malus_domestica	MD09G1037400.v1.1 MD17G1038700.v1.1
prunus_persica	Prupe.3G280300_v2.0.a1
pyrus_communis	pycom111g03000 pycom17g03490
rosa_chinensis	RchiOBHm_Chr2g0170621
rosa_laevigata	RLG00000021969
rosa_multiflora	Rmu_sc0003787.1_g000032 Rmu_sc0010307.1_g000004
rosa_rugosa	Rorug02G0549800
rosa_samantha	Rh2AG622100 Rh2BG633400 Rh2CG602700 Rh2DG646200
rosa_wichuraiana	Rw2G051580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1161
AarI	CACCTGC	1 cut(s)	916
Acc16I	TGCGCA	1 cut(s)	912
Acc36I	ACCTGC	2 cut(s)	916, 996
AccI	GTMKAC	1 cut(s)	679
AciI	CCGC	1 cut(s)	1076
AclWI	GGATC	2 cut(s)	194, 256
AcsI	RAATTY	1 cut(s)	418
AcuI	CTGAAG	2 cut(s)	18, 709
AfaI	GTAC	3 cut(s)	536, 625, 891
AfiI	CCNNNNNNNGG	1 cut(s)	812
AgeI	ACCGGT	1 cut(s)	125
AgsI	TTSAA	3 cut(s)	220, 1028, 1037
AjuI	GAANNNNNNNTTGG	2 cut(s)	514, 546
AloI	GAACNNNNNNTCC	2 cut(s)	216, 248
AluBI	AGCT	4 cut(s)	270, 823, 836, 1033
AluI	AGCT	4 cut(s)	270, 823, 836, 1033
Alw26I	GTCTC	4 cut(s)	307, 709, 749, 1102
AlwI	GGATC	2 cut(s)	194, 256
AlwNI	CAGNNNCTG	1 cut(s)	626
Ama87I	CYCGRG	2 cut(s)	265, 1187
AoxI	GGCC	1 cut(s)	1190
ApeKI	GCWGC	2 cut(s)	710, 951
ApoI	RAATTY	1 cut(s)	418
AsiGI	ACCGGT	1 cut(s)	125
Asp700I	GAANNNNTTC	2 cut(s)	79, 459
AspLEI	GCGC	1 cut(s)	913
AspS9I	GGNCC	1 cut(s)	1190
AsuC2I	CCSGG	3 cut(s)	806, 1188, 1189
AsuHPI	GGTGA	3 cut(s)	115, 440, 897
AvaI	CYCGRG	2 cut(s)	265, 1187
AxyI	CCTNAGG	2 cut(s)	492, 842
BauI	CACGAG	1 cut(s)	568
BbsI	GAAGAC	1 cut(s)	90
BbvI	GCAGC	2 cut(s)	697, 963
BccI	CCATC	6 cut(s)	48, 167, 336, 347, 503, 1109
BclI	TGATCA	1 cut(s)	166
BcnI	CCSGG	3 cut(s)	806, 1188, 1189
BcoDI	GTCTC	4 cut(s)	307, 709, 749, 1102
BfaI	CTAG	2 cut(s)	441, 641
BfmI	CTRYAG	1 cut(s)	989
BfuAI	ACCTGC	2 cut(s)	916, 996
BisI	GCNGC	2 cut(s)	711, 952
BlsI	GCNGC	2 cut(s)	712, 953
Bme1390I	CCNGG	3 cut(s)	806, 1188, 1189
BmeT110I	CYCGRG	2 cut(s)	265, 1187
BmgT120I	GGNCC	1 cut(s)	1190
BmiI	GGNNCC	2 cut(s)	234, 446
BmrFI	CCNGG	3 cut(s)	806, 1188, 1189
BmrI	ACTGGG	2 cut(s)	770, 1144
BmsI	GCATC	2 cut(s)	1129, 1189
BmuI	ACTGGG	2 cut(s)	770, 1144
BpiI	GAAGAC	1 cut(s)	90
BpmI	CTGGAG	1 cut(s)	358
BpuMI	CCSGG	3 cut(s)	806, 1188, 1189
Bsa29I	ATCGAT	4 cut(s)	17, 198, 657, 1197
BsaBI	GATNNNNATC	2 cut(s)	1007, 1119
BsaI	GGTCTC	2 cut(s)	307, 1102
BsaJI	CCNNGG	2 cut(s)	368, 1187
BsaWI	WCCGGW	2 cut(s)	125, 938
Bsc4I	CCNNNNNNNGG	1 cut(s)	812
Bse118I	RCCGGY	1 cut(s)	125
Bse1I	ACTGG	3 cut(s)	631, 765, 1139
Bse21I	CCTNAGG	2 cut(s)	492, 842
Bse3DI	GCAATG	2 cut(s)	693, 1003
Bse8I	GATNNNNATC	2 cut(s)	1007, 1119
BseCI	ATCGAT	4 cut(s)	17, 198, 657, 1197
BseDI	CCNNGG	2 cut(s)	368, 1187
BseGI	GGATG	5 cut(s)	63, 514, 1090, 1120, 1155
BseJI	GATNNNNATC	2 cut(s)	1007, 1119
BseLI	CCNNNNNNNGG	1 cut(s)	812
BseMI	GCAATG	2 cut(s)	693, 1003
BseMII	CTCAG	6 cut(s)	195, 406, 809, 846, 884, 1034
BseNI	ACTGG	3 cut(s)	631, 765, 1139
BseRI	GAGGAG	1 cut(s)	762
BseXI	GCAGC	2 cut(s)	697, 963
BshFI	GGCC	1 cut(s)	1192
BshTI	ACCGGT	1 cut(s)	125
BshVI	ATCGAT	4 cut(s)	17, 198, 657, 1197
BsiHKCI	CYCGRG	2 cut(s)	265, 1187
BsiSI	CCGG	4 cut(s)	126, 806, 939, 1188
BslFI	GGGAC	3 cut(s)	237, 940, 947
BslI	CCNNNNNNNGG	1 cut(s)	812
BsmAI	GTCTC	4 cut(s)	307, 709, 749, 1102
BsmFI	GGGAC	3 cut(s)	237, 940, 947
BsnI	GGCC	1 cut(s)	1192
Bso31I	GGTCTC	2 cut(s)	307, 1102
BsoBI	CYCGRG	2 cut(s)	265, 1187
Bsp143I	GATC	7 cut(s)	166, 199, 248, 361, 637, 654, 1008
BspACI	CCGC	1 cut(s)	1076
BspANI	GGCC	1 cut(s)	1192
BspCNI	CTCAG	6 cut(s)	196, 405, 808, 845, 885, 1033
BspDI	ATCGAT	4 cut(s)	17, 198, 657, 1197
BspLI	GGNNCC	2 cut(s)	234, 446
BspMAI	CTGCAG	1 cut(s)	993
BspMI	ACCTGC	2 cut(s)	916, 996
BspPI	GGATC	2 cut(s)	194, 256
BspTNI	GGTCTC	2 cut(s)	307, 1102
BsrDI	GCAATG	2 cut(s)	693, 1003
BsrFI	RCCGGY	1 cut(s)	125
BsrI	ACTGG	3 cut(s)	631, 765, 1139
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	2 cut(s)	368, 1187
BssMI	GATC	7 cut(s)	166, 199, 248, 361, 637, 654, 1008
BssSI	CACGAG	1 cut(s)	568
Bst2BI	CACGAG	1 cut(s)	568
Bst4CI	ACNGT	3 cut(s)	776, 889, 1236
Bst6I	CTCTTC	2 cut(s)	465, 598
BstC8I	GCNNGC	1 cut(s)	1172
BstDEI	CTNAG	9 cut(s)	204, 392, 492, 576, 795, 832, 842, 893, 1020
BstF5I	GGATG	5 cut(s)	63, 514, 1090, 1120, 1155
BstHHI	GCGC	1 cut(s)	913
BstKTI	GATC	7 cut(s)	169, 202, 251, 364, 640, 657, 1011
BstMAI	GTCTC	4 cut(s)	307, 709, 749, 1102
BstMBI	GATC	7 cut(s)	166, 199, 248, 361, 637, 654, 1008
BstSCI	CCNGG	3 cut(s)	804, 1186, 1187
BstSFI	CTRYAG	1 cut(s)	989
BstV1I	GCAGC	2 cut(s)	697, 963
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	248
Bsu15I	ATCGAT	4 cut(s)	17, 198, 657, 1197
Bsu36I	CCTNAGG	2 cut(s)	492, 842
BsuRI	GGCC	1 cut(s)	1192
BsuTUI	ATCGAT	4 cut(s)	17, 198, 657, 1197
BtgZI	GCGATG	1 cut(s)	145
BtsCI	GGATG	5 cut(s)	63, 514, 1090, 1120, 1155
BtsIMutI	CAGTG	1 cut(s)	758
BveI	ACCTGC	2 cut(s)	916, 996
Cac8I	GCNNGC	1 cut(s)	1172
CaiI	CAGNNNCTG	1 cut(s)	626
CfoI	GCGC	1 cut(s)	913
Cfr10I	RCCGGY	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	1190
Cfr9I	CCCGGG	1 cut(s)	1187
ClaI	ATCGAT	4 cut(s)	17, 198, 657, 1197
Csp6I	GTAC	3 cut(s)	535, 624, 890
CspAI	ACCGGT	1 cut(s)	125
CviAII	CATG	1 cut(s)	790
CviJI	RGCY	8 cut(s)	270, 440, 710, 804, 823, 836, 1033, 1192
CviKI_1	RGCY	8 cut(s)	270, 440, 710, 804, 823, 836, 1033, 1192
CviQI	GTAC	3 cut(s)	535, 624, 890
DdeI	CTNAG	9 cut(s)	204, 392, 492, 576, 795, 832, 842, 893, 1020
DpnI	GATC	7 cut(s)	168, 201, 250, 363, 639, 656, 1010
DpnII	GATC	7 cut(s)	166, 199, 248, 361, 637, 654, 1008
DraI	TTTAAA	1 cut(s)	154
Eam1104I	CTCTTC	2 cut(s)	465, 598
EarI	CTCTTC	2 cut(s)	465, 598
Eco31I	GGTCTC	2 cut(s)	307, 1102
Eco32I	GATATC	1 cut(s)	646
Eco57I	CTGAAG	2 cut(s)	18, 709
Eco81I	CCTNAGG	2 cut(s)	492, 842
Eco88I	CYCGRG	2 cut(s)	265, 1187
EcoRV	GATATC	1 cut(s)	646
FaeI	CATG	1 cut(s)	793
FalI	AAGNNNNNCTT	2 cut(s)	235, 267
FaqI	GGGAC	3 cut(s)	237, 940, 947
FatI	CATG	1 cut(s)	789
FauNDI	CATATG	1 cut(s)	450
FbaI	TGATCA	1 cut(s)	166
FblI	GTMKAC	1 cut(s)	679
Fnu4HI	GCNGC	2 cut(s)	711, 952
FokI	GGATG	5 cut(s)	70, 521, 1097, 1107, 1162
Fsp4HI	GCNGC	2 cut(s)	711, 952
FspBI	CTAG	2 cut(s)	441, 641
FspI	TGCGCA	1 cut(s)	912
GlaI	GCGC	1 cut(s)	912
GluI	GCNGC	2 cut(s)	711, 952
GsuI	CTGGAG	1 cut(s)	358
HaeIII	GGCC	1 cut(s)	1192
HapII	CCGG	4 cut(s)	126, 806, 939, 1188
HhaI	GCGC	1 cut(s)	913
Hin1II	CATG	1 cut(s)	793
Hin6I	GCGC	1 cut(s)	911
HinP1I	GCGC	1 cut(s)	911
HindIII	AAGCTT	1 cut(s)	821
HinfI	GANTC	7 cut(s)	145, 280, 287, 431, 455, 793, 961
HpaII	CCGG	4 cut(s)	126, 806, 939, 1188
HphI	GGTGA	3 cut(s)	115, 440, 897
Hpy166II	GTNNAC	3 cut(s)	573, 680, 829
Hpy188I	TCNGA	9 cut(s)	37, 49, 144, 369, 543, 728, 798, 971, 1023
Hpy188III	TCNNGA	9 cut(s)	26, 203, 236, 284, 337, 562, 641, 919, 1012
Hpy8I	GTNNAC	3 cut(s)	573, 680, 829
HpyAV	CCTTC	3 cut(s)	656, 806, 1031
HpyCH4III	ACNGT	3 cut(s)	776, 889, 1236
HpyCH4V	TGCA	6 cut(s)	300, 768, 951, 991, 1102, 1174
HpyF3I	CTNAG	9 cut(s)	204, 392, 492, 576, 795, 832, 842, 893, 1020
Hsp92II	CATG	1 cut(s)	793
HspAI	GCGC	1 cut(s)	911
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	7 cut(s)	166, 199, 248, 361, 637, 654, 1008
Lsp1109I	GCAGC	2 cut(s)	697, 963
LweI	GCATC	2 cut(s)	1129, 1189
MaeI	CTAG	2 cut(s)	441, 641
MaeIII	GTNAC	5 cut(s)	611, 776, 883, 1087, 1130
MalI	GATC	7 cut(s)	168, 201, 250, 363, 639, 656, 1010
MboI	GATC	7 cut(s)	166, 199, 248, 361, 637, 654, 1008
MflI	RGATCY	1 cut(s)	248
MluCI	AATT	3 cut(s)	418, 981, 1227
MlyI	GAGTC	3 cut(s)	281, 787, 970
MmeI	TCCRAC	1 cut(s)	211
MroXI	GAANNNNTTC	2 cut(s)	79, 459
MseI	TTAA	6 cut(s)	153, 375, 672, 819, 1217, 1238
MslI	CAYNNNNRTG	1 cut(s)	1125
MspA1I	CMGCKG	1 cut(s)	836
MspI	CCGG	4 cut(s)	126, 806, 939, 1188
MspR9I	CCNGG	3 cut(s)	806, 1188, 1189
NciI	CCSGG	3 cut(s)	806, 1188, 1189
NdeI	CATATG	1 cut(s)	450
NdeII	GATC	7 cut(s)	166, 199, 248, 361, 637, 654, 1008
NlaIII	CATG	1 cut(s)	793
NlaIV	GGNNCC	2 cut(s)	234, 446
NmeAIII	GCCGAG	1 cut(s)	686
NmuCI	GTSAC	2 cut(s)	883, 1087
NsbI	TGCGCA	1 cut(s)	912
PaeR7I	CTCGAG	1 cut(s)	265
PaqCI	CACCTGC	1 cut(s)	916
PcsI	WCGNNNNNNNCGW	1 cut(s)	654
PdmI	GAANNNNTTC	2 cut(s)	79, 459
PfeI	GAWTC	4 cut(s)	145, 280, 431, 455
PinAI	ACCGGT	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	712, 953
PleI	GAGTC	3 cut(s)	281, 787, 969
PpsI	GAGTC	3 cut(s)	281, 787, 969
PsiI	TTATAA	1 cut(s)	1161
PspN4I	GGNNCC	2 cut(s)	234, 446
PspPI	GGNCC	1 cut(s)	1190
PspXI	VCTCGAGB	1 cut(s)	265
PstI	CTGCAG	1 cut(s)	993
PstNI	CAGNNNCTG	1 cut(s)	626
PsuI	RGATCY	1 cut(s)	248
PvuII	CAGCTG	1 cut(s)	836
RsaI	GTAC	3 cut(s)	536, 625, 891
RsaNI	GTAC	3 cut(s)	535, 624, 890
RseI	CAYNNNNRTG	1 cut(s)	1125
SaqAI	TTAA	6 cut(s)	153, 375, 672, 819, 1217, 1238
SatI	GCNGC	2 cut(s)	711, 952
Sau3AI	GATC	7 cut(s)	166, 199, 248, 361, 637, 654, 1008
Sau96I	GGNCC	1 cut(s)	1190
SchI	GAGTC	3 cut(s)	281, 787, 970
ScrFI	CCNGG	3 cut(s)	806, 1188, 1189
SfaNI	GCATC	2 cut(s)	1129, 1189
SfcI	CTRYAG	1 cut(s)	989
Sfr274I	CTCGAG	1 cut(s)	265
SlaI	CTCGAG	1 cut(s)	265
SmaI	CCCGGG	1 cut(s)	1189
SmiMI	CAYNNNNRTG	1 cut(s)	1125
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
SrfI	GCCCGGGC	1 cut(s)	1189
Sse9I	AATT	3 cut(s)	418, 981, 1227
SsiI	CCGC	1 cut(s)	1076
SspMI	CTAG	2 cut(s)	441, 641
StyD4I	CCNGG	3 cut(s)	804, 1186, 1187
TaaI	ACNGT	3 cut(s)	776, 889, 1236
TaqI	TCGA	9 cut(s)	17, 198, 266, 290, 403, 563, 657, 918, 1197
TasI	AATT	3 cut(s)	418, 981, 1227
TfiI	GAWTC	4 cut(s)	145, 280, 431, 455
Tru1I	TTAA	6 cut(s)	153, 375, 672, 819, 1217, 1238
Tru9I	TTAA	6 cut(s)	153, 375, 672, 819, 1217, 1238
TscAI	CASTG	1 cut(s)	765
TseFI	GTSAC	2 cut(s)	883, 1087
TseI	GCWGC	2 cut(s)	710, 951
Tsp45I	GTSAC	2 cut(s)	883, 1087
TspDTI	ATGAA	6 cut(s)	17, 80, 431, 675, 1019, 1166
TspMI	CCCGGG	1 cut(s)	1187
TspRI	CASTG	1 cut(s)	765
XapI	RAATTY	1 cut(s)	418
XbaI	TCTAGA	1 cut(s)	640
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1200
XhoI	CTCGAG	1 cut(s)	265
XmaI	CCCGGG	1 cut(s)	1187
XmiI	GTMKAC	1 cut(s)	679
XmnI	GAANNNNTTC	2 cut(s)	79, 459
XspI	CTAG	2 cut(s)	441, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.