Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0011047

Physical Location & Seq

Genomic Coordinates Forward (+)

87264261 .. 87270120

Gene Structure 5860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG646200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGAATACTTTTTTCCCAGAAAAGATGAACATCTATGGTAAAAGGGAGAGAAGTCTGAACATGAACAGACTCATGCCTTTCCTGCTTACTTCTTTAGCCATAGCCTCCATTTTCAGCTTCTTCCTTGCTTATTCCCCAAGCTCTTTTCCGATCACATCCAAACAAGCCCTTACTTCTGTTCAGAACCAGCCAGATGATGATAATCCTGGCCATGCAGTACCAGTCAAGATGATCCCACCTCCAAAAAAGGAAGAGGAGTGTGACTTGTTTAAGGGTCAGTGGGTTCCGGATTTGAGAGGGCCATTGTATACGAATTCGAGCTGTAAGAGTATTCCGGAATCGAAGAATTGTTTCAAGAATGGGAGGTTGGATAGGGATTTTCTGAATTGGAAATGGAAGCCGGAGAAATGTGAGCTGCCGGAGTTTGATCCCAAGGCGTTCTTGCAAATTGTTCGAGGGAAAAAGATGGCATTTGTTGGTGACTCTGTTGCTCGCAATCACGTTGAGTCTCTTCTATGCCTCTTGTCACAGGAGGAACTTCCCAAAGACATCTACAAGGATTCTGAAGAACGTTTCAGGACATGGTACTTTCCTCAACATGACTTCACCCTAATGAAATTGTGGTCCAAATATCTTATAGCCGCAGACGAGAGGATGGTTAATGGCACTGGTTCAGGCGTTTTTGATCTGCACATAGACAGAATCGATGATGAATGGGCAAAACACCTTCCGGGTTTAGACTACGCCATCATCTCGGACGGGCATTGGTTTTTTCGGGTATTGTACCTATACAAAGGCAAAAAACTCATAGGATGTGTCTATTGTAACCAACCCAATATTACCGGCTTGAACACTAGCAATGCAGTTCGTATGGCGTTTCGATCTGCATTTAAATACATTAGCAATTGCAAGAATTGCAAGGGCGGGCTTCTGACCTTGTTGAGGACATTTGCACCGGCACATTTTGAGAATGGGGCTTGGAACACTGGAGGTTACTGCAATAGGACAAGTCCCTTAAGTGAGGCACAAGTTGATTTTACGAAGTTTGATTGGGAAATGAGGAAGATTCAGATTGAGGAGATCGAAAAAGCAAGAAAAGAAGGAAAGAAGATTAGAGTTTTGGATATAACTAGGGCAATGTTGATGAGACCAGACGGGCACCCTGGACTTCACTGGGGAAATCAATGGATGAAGGGTTATAGTGACTGTGTTCATTGGTGCATGCCAGGCCCGGTTGATTACTGGAACAGTTTTTTGATGGCACTTATCAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

425

Amino Acids

49.2

Weight (kDa)

8.84

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	85 - 138	7.9e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	139 - 421	3.3e-92	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28150
fragaria_vesca	FvH4_6g50300 FvH4_6g50320 FvH4_6g50320 FvH4_6g50320
malus_domestica	MD09G1037400.v1.1 MD17G1038700.v1.1
prunus_persica	Prupe.3G280300_v2.0.a1
pyrus_communis	pycom111g03000 pycom17g03490
rosa_chinensis	RchiOBHm_Chr2g0170621
rosa_laevigata	RLG00000021969
rosa_multiflora	Rmu_sc0003787.1_g000032 Rmu_sc0010307.1_g000004
rosa_rugosa	Rorug02G0549800
rosa_samantha	Rh2AG622100 Rh2BG633400 Rh2CG602700 Rh2DG646200
rosa_wichuraiana	Rw2G051580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1158
AccI	GTMKAC	1 cut(s)	308
AccIII	TCCGGA	2 cut(s)	286, 334
AciI	CCGC	2 cut(s)	642, 924
AclI	AACGTT	1 cut(s)	571
AclWI	GGATC	2 cut(s)	226, 422
AcoI	YGGCCR	1 cut(s)	208
AcsI	RAATTY	1 cut(s)	313
AcuI	CTGAAG	1 cut(s)	585
AfaI	GTAC	3 cut(s)	219, 587, 785
AfiI	CCNNNNNNNGG	1 cut(s)	942
AflII	CTTAAG	1 cut(s)	1015
AgsI	TTSAA	2 cut(s)	355, 850
AjnI	CCWGG	3 cut(s)	205, 1162, 1225
AjuI	GAANNNNNNNTTGG	2 cut(s)	350, 382
AluBI	AGCT	4 cut(s)	117, 141, 321, 415
AluI	AGCT	4 cut(s)	117, 141, 321, 415
Alw26I	GTCTC	2 cut(s)	513, 1141
AlwI	GGATC	2 cut(s)	226, 422
Aor13HI	TCCGGA	2 cut(s)	286, 334
AoxI	GGCC	3 cut(s)	208, 299, 1228
ApeKI	GCWGC	1 cut(s)	415
ApoI	RAATTY	1 cut(s)	313
Asp700I	GAANNNNTTC	1 cut(s)	350
AspS9I	GGNCC	3 cut(s)	299, 624, 1229
AsuC2I	CCSGG	2 cut(s)	732, 1232
AsuHPI	GGTGA	2 cut(s)	491, 598
AvaII	GGWCC	1 cut(s)	624
BaeGI	GKGCMC	1 cut(s)	1161
BalI	TGGCCA	1 cut(s)	210
BanI	GGYRCC	1 cut(s)	1158
BbvI	GCAGC	1 cut(s)	402
BccI	CCATC	4 cut(s)	460, 649, 755, 1252
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BciT130I	CCWGG	3 cut(s)	207, 1164, 1227
BcnI	CCSGG	2 cut(s)	732, 1232
BcoDI	GTCTC	2 cut(s)	513, 1141
BfaI	CTAG	2 cut(s)	855, 1131
BfrI	CTTAAG	1 cut(s)	1015
BisI	GCNGC	2 cut(s)	416, 642
BlsI	GCNGC	2 cut(s)	417, 643
Bme1390I	CCNGG	5 cut(s)	207, 732, 1164, 1227, 1232
Bme18I	GGWCC	1 cut(s)	624
BmgT120I	GGNCC	3 cut(s)	299, 624, 1229
BmiI	GGNNCC	2 cut(s)	285, 1160
BmrFI	CCNGG	5 cut(s)	207, 732, 1164, 1227, 1232
BmrI	ACTGGG	1 cut(s)	1183
BmuI	ACTGGG	1 cut(s)	1183
BpmI	CTGGAG	1 cut(s)	1008
BpuMI	CCSGG	2 cut(s)	732, 1232
Bsa29I	ATCGAT	1 cut(s)	705
BsaBI	GATNNNNATC	2 cut(s)	29, 201
BsaI	GGTCTC	1 cut(s)	1141
BsaJI	CCNNGG	2 cut(s)	432, 1162
BsaWI	WCCGGW	2 cut(s)	286, 334
Bsc4I	CCNNNNNNNGG	1 cut(s)	942
Bse118I	RCCGGY	2 cut(s)	842, 955
Bse1I	ACTGG	5 cut(s)	221, 673, 991, 1178, 1247
Bse3DI	GCAATG	2 cut(s)	865, 1143
Bse8I	GATNNNNATC	2 cut(s)	29, 201
BseAI	TCCGGA	2 cut(s)	286, 334
BseBI	CCWGG	3 cut(s)	207, 1164, 1227
BseCI	ATCGAT	1 cut(s)	705
BseDI	CCNNGG	2 cut(s)	432, 1162
BseGI	GGATG	4 cut(s)	155, 660, 818, 1194
BseJI	GATNNNNATC	2 cut(s)	29, 201
BseLI	CCNNNNNNNGG	1 cut(s)	942
BseMI	GCAATG	2 cut(s)	865, 1143
BseNI	ACTGG	5 cut(s)	221, 673, 991, 1178, 1247
BseRI	GAGGAG	2 cut(s)	269, 1091
BseSI	GKGCMC	1 cut(s)	1161
BseXI	GCAGC	1 cut(s)	402
BsgI	GTGCAG	1 cut(s)	674
BshFI	GGCC	3 cut(s)	210, 301, 1230
BshNI	GGYRCC	1 cut(s)	1158
BshVI	ATCGAT	1 cut(s)	705
BsiSI	CCGG	8 cut(s)	287, 335, 401, 419, 731, 843, 956, 1232
BslFI	GGGAC	1 cut(s)	996
BslI	CCNNNNNNNGG	1 cut(s)	942
BsmAI	GTCTC	2 cut(s)	513, 1141
BsmFI	GGGAC	1 cut(s)	996
BsnI	GGCC	3 cut(s)	210, 301, 1230
Bso31I	GGTCTC	1 cut(s)	1141
Bsp1286I	GDGCHC	1 cut(s)	1161
Bsp13I	TCCGGA	2 cut(s)	286, 334
Bsp143I	GATC	6 cut(s)	150, 231, 427, 685, 881, 1080
BspACI	CCGC	2 cut(s)	642, 924
BspANI	GGCC	3 cut(s)	210, 301, 1230
BspDI	ATCGAT	1 cut(s)	705
BspEI	TCCGGA	2 cut(s)	286, 334
BspLI	GGNNCC	2 cut(s)	285, 1160
BspPI	GGATC	2 cut(s)	226, 422
BspT107I	GGYRCC	1 cut(s)	1158
BspTI	CTTAAG	1 cut(s)	1015
BspTNI	GGTCTC	1 cut(s)	1141
BsrDI	GCAATG	2 cut(s)	865, 1143
BsrFI	RCCGGY	2 cut(s)	842, 955
BsrI	ACTGG	5 cut(s)	221, 673, 991, 1178, 1247
BssAI	RCCGGY	2 cut(s)	842, 955
BssECI	CCNNGG	2 cut(s)	432, 1162
BssMI	GATC	6 cut(s)	150, 231, 427, 685, 881, 1080
BssNAI	GTATAC	1 cut(s)	309
BssT1I	CCWWGG	1 cut(s)	432
Bst1107I	GTATAC	1 cut(s)	309
Bst2UI	CCWGG	3 cut(s)	207, 1164, 1227
Bst4CI	ACNGT	2 cut(s)	1208, 1250
Bst6I	CTCTTC	2 cut(s)	246, 516
BstAFI	CTTAAG	1 cut(s)	1015
BstAPI	GCANNNNNTGC	1 cut(s)	915
BstC8I	GCNNGC	3 cut(s)	493, 926, 1223
BstENI	CCTNNNNNAGG	1 cut(s)	940
BstF5I	GGATG	4 cut(s)	155, 660, 818, 1194
BstKTI	GATC	6 cut(s)	153, 234, 430, 688, 884, 1083
BstMAI	GTCTC	2 cut(s)	513, 1141
BstMBI	GATC	6 cut(s)	150, 231, 427, 685, 881, 1080
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 915, 1227
BstNI	CCWGG	3 cut(s)	207, 1164, 1227
BstNSI	RCATGY	1 cut(s)	1225
BstSCI	CCNGG	5 cut(s)	205, 730, 1162, 1225, 1230
BstSLI	GKGCMC	1 cut(s)	1161
BstV1I	GCAGC	1 cut(s)	402
BstZ17I	GTATAC	1 cut(s)	309
Bsu15I	ATCGAT	1 cut(s)	705
BsuRI	GGCC	3 cut(s)	210, 301, 1230
BsuTUI	ATCGAT	1 cut(s)	705
BtsCI	GGATG	4 cut(s)	155, 660, 818, 1194
BtsIMutI	CAGTG	4 cut(s)	284, 666, 984, 1171
Cac8I	GCNNGC	3 cut(s)	493, 926, 1223
Cfr10I	RCCGGY	2 cut(s)	842, 955
Cfr13I	GGNCC	3 cut(s)	299, 624, 1229
ClaI	ATCGAT	1 cut(s)	705
Csp6I	GTAC	3 cut(s)	218, 586, 784
CviAII	CATG	6 cut(s)	61, 73, 212, 582, 599, 1222
CviQI	GTAC	3 cut(s)	218, 586, 784
DpnI	GATC	6 cut(s)	152, 233, 429, 687, 883, 1082
DpnII	GATC	6 cut(s)	150, 231, 427, 685, 881, 1080
DraI	TTTAAA	1 cut(s)	892
EaeI	YGGCCR	1 cut(s)	208
Eam1104I	CTCTTC	2 cut(s)	246, 516
EarI	CTCTTC	2 cut(s)	246, 516
Eco130I	CCWWGG	1 cut(s)	432
Eco31I	GGTCTC	1 cut(s)	1141
Eco47I	GGWCC	1 cut(s)	624
Eco57I	CTGAAG	1 cut(s)	585
EcoNI	CCTNNNNNAGG	1 cut(s)	940
EcoRI	GAATTC	1 cut(s)	313
EcoRII	CCWGG	3 cut(s)	205, 1162, 1225
EcoT14I	CCWWGG	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	6 cut(s)	64, 76, 215, 585, 602, 1225
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FaqI	GGGAC	1 cut(s)	996
FatI	CATG	6 cut(s)	60, 72, 211, 581, 598, 1221
FauI	CCCGC	1 cut(s)	917
FblI	GTMKAC	1 cut(s)	308
Fnu4HI	GCNGC	2 cut(s)	416, 642
FokI	GGATG	4 cut(s)	142, 667, 825, 1201
Fsp4HI	GCNGC	2 cut(s)	416, 642
FspBI	CTAG	2 cut(s)	855, 1131
GluI	GCNGC	2 cut(s)	416, 642
GsuI	CTGGAG	1 cut(s)	1008
HaeIII	GGCC	3 cut(s)	210, 301, 1230
HapII	CCGG	8 cut(s)	287, 335, 401, 419, 731, 843, 956, 1232
Hin1II	CATG	6 cut(s)	64, 76, 215, 585, 602, 1225
HinfI	GANTC	7 cut(s)	69, 338, 482, 506, 560, 702, 1066
HpaII	CCGG	8 cut(s)	287, 335, 401, 419, 731, 843, 956, 1232
HphI	GGTGA	2 cut(s)	491, 598
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188I	TCNGA	9 cut(s)	57, 150, 183, 384, 565, 757, 933, 1071, 1271
Hpy188III	TCNNGA	5 cut(s)	226, 287, 335, 355, 577
Hpy8I	GTNNAC	1 cut(s)	309
HpyAV	CCTTC	3 cut(s)	737, 1094, 1186
HpyCH4III	ACNGT	2 cut(s)	1208, 1250
HpyCH4IV	ACGT	2 cut(s)	501, 571
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 915, 1227
HpySE526I	ACGT	2 cut(s)	501, 571
Hsp92II	CATG	6 cut(s)	64, 76, 215, 585, 602, 1225
Kpn2I	TCCGGA	2 cut(s)	286, 334
Kzo9I	GATC	6 cut(s)	150, 231, 427, 685, 881, 1080
Lsp1109I	GCAGC	1 cut(s)	402
MaeI	CTAG	2 cut(s)	855, 1131
MaeII	ACGT	2 cut(s)	501, 571
MaeIII	GTNAC	6 cut(s)	260, 479, 525, 824, 992, 1202
MalI	GATC	6 cut(s)	152, 233, 429, 687, 883, 1082
MboI	GATC	6 cut(s)	150, 231, 427, 685, 881, 1080
MboII	GAAGA	7 cut(s)	112, 263, 355, 503, 578, 1075, 1120
MfeI	CAATTG	1 cut(s)	904
MhlI	GDGCHC	1 cut(s)	1161
MlsI	TGGCCA	1 cut(s)	210
MluCI	AATT	8 cut(s)	313, 346, 385, 447, 617, 904, 913, 1273
MluNI	TGGCCA	1 cut(s)	210
MlyI	GAGTC	3 cut(s)	63, 476, 515
MmeI	TCCRAC	1 cut(s)	348
Mox20I	TGGCCA	1 cut(s)	210
MroI	TCCGGA	2 cut(s)	286, 334
MroXI	GAANNNNTTC	1 cut(s)	350
MscI	TGGCCA	1 cut(s)	210
MseI	TTAA	5 cut(s)	270, 660, 891, 1016, 1276
MslI	CAYNNNNRTG	1 cut(s)	611
Msp20I	TGGCCA	1 cut(s)	210
MspCI	CTTAAG	1 cut(s)	1015
MspI	CCGG	8 cut(s)	287, 335, 401, 419, 731, 843, 956, 1232
MspR9I	CCNGG	5 cut(s)	207, 732, 1164, 1227, 1232
MunI	CAATTG	1 cut(s)	904
MvaI	CCWGG	3 cut(s)	207, 1164, 1227
MwoI	GCNNNNNNNGC	3 cut(s)	82, 915, 1227
NciI	CCSGG	2 cut(s)	732, 1232
NdeII	GATC	6 cut(s)	150, 231, 427, 685, 881, 1080
NlaIII	CATG	6 cut(s)	64, 76, 215, 585, 602, 1225
NlaIV	GGNNCC	2 cut(s)	285, 1160
NmuCI	GTSAC	4 cut(s)	260, 479, 525, 1202
NspI	RCATGY	1 cut(s)	1225
PaeI	GCATGC	1 cut(s)	1225
PdmI	GAANNNNTTC	1 cut(s)	350
PfeI	GAWTC	4 cut(s)	338, 560, 702, 1066
PkrI	GCNGC	2 cut(s)	417, 643
PleI	GAGTC	3 cut(s)	63, 476, 514
PpsI	GAGTC	3 cut(s)	63, 476, 514
Psp1406I	AACGTT	1 cut(s)	571
Psp6I	CCWGG	3 cut(s)	205, 1162, 1225
PspGI	CCWGG	3 cut(s)	205, 1162, 1225
PspN4I	GGNNCC	2 cut(s)	285, 1160
PspPI	GGNCC	3 cut(s)	299, 624, 1229
RsaI	GTAC	3 cut(s)	219, 587, 785
RsaNI	GTAC	3 cut(s)	218, 586, 784
RseI	CAYNNNNRTG	1 cut(s)	611
SaqAI	TTAA	5 cut(s)	270, 660, 891, 1016, 1276
SatI	GCNGC	2 cut(s)	416, 642
Sau3AI	GATC	6 cut(s)	150, 231, 427, 685, 881, 1080
Sau96I	GGNCC	3 cut(s)	299, 624, 1229
SchI	GAGTC	3 cut(s)	63, 476, 515
ScrFI	CCNGG	5 cut(s)	207, 732, 1164, 1227, 1232
SduI	GDGCHC	1 cut(s)	1161
SinI	GGWCC	1 cut(s)	624
SmiI	ATTTAAAT	1 cut(s)	892
SmiMI	CAYNNNNRTG	1 cut(s)	611
SmlI	CTYRAG	1 cut(s)	1015
SmoI	CTYRAG	1 cut(s)	1015
SphI	GCATGC	1 cut(s)	1225
Sse9I	AATT	8 cut(s)	313, 346, 385, 447, 617, 904, 913, 1273
SsiI	CCGC	2 cut(s)	642, 924
SspI	AATATT	1 cut(s)	838
SspMI	CTAG	2 cut(s)	855, 1131
StyD4I	CCNGG	5 cut(s)	205, 730, 1162, 1225, 1230
StyI	CCWWGG	1 cut(s)	432
SwaI	ATTTAAAT	1 cut(s)	892
TaaI	ACNGT	2 cut(s)	1208, 1250
TaiI	ACGT	2 cut(s)	504, 574
TaqI	TCGA	6 cut(s)	317, 341, 454, 705, 880, 1083
TasI	AATT	8 cut(s)	313, 346, 385, 447, 617, 904, 913, 1273
TauI	GCSGC	1 cut(s)	644
TfiI	GAWTC	4 cut(s)	338, 560, 702, 1066
Tru1I	TTAA	5 cut(s)	270, 660, 891, 1016, 1276
Tru9I	TTAA	5 cut(s)	270, 660, 891, 1016, 1276
TscAI	CASTG	4 cut(s)	284, 673, 991, 1178
TseFI	GTSAC	4 cut(s)	260, 479, 525, 1202
TseI	GCWGC	1 cut(s)	415
Tsp45I	GTSAC	4 cut(s)	260, 479, 525, 1202
TspDTI	ATGAA	7 cut(s)	17, 41, 77, 629, 726, 1202, 1205
TspRI	CASTG	4 cut(s)	284, 673, 991, 1178
Vha464I	CTTAAG	1 cut(s)	1015
VpaK11BI	GGWCC	1 cut(s)	624
XagI	CCTNNNNNAGG	1 cut(s)	940
XapI	RAATTY	1 cut(s)	313
XceI	RCATGY	1 cut(s)	1225
XmiI	GTMKAC	1 cut(s)	308
XmnI	GAANNNNTTC	1 cut(s)	350
XspI	CTAG	2 cut(s)	855, 1131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.