Prupe.3G280300_v2.0.a1

Protein ALTERED XYLOGLUCAN 4-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
25615183 .. 25618569
3387 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G280300.1

Sequence Viewer

Length: 1341 bp
ATGAGTTTTTGTACTTTTTCCCCAGAAAAGCTTCATAACAATGCCAAAAGGGAGAGAGGCTTTAACATGGGGAGCAGATTGGTTCCTTTCTTGTTCACTTCTCTAGCCATAGCCACCCTTTTCAGCTTTTTCCTTATCTATTCTCCAAACCCTTTGCTAACCATAGCCAAACAAGGCCTTAATTCTATTCAAATCCAGCCAAACCTTCATGCAGTACAAGAACAAGACCACCAAGACCTTGATCACAATAACATCAACCTCCAACCACCTACAAAGAAGGAGGAGGACAAGTGTGACTTGTATAAGGGTCACTGGATTCCAGAATTAAGAGGGCCAATGTACACCAATTCAAGCTGTGCCACAATTCCAGAATCAAAGAATTGTTTCAAAAATGGCAGAAGGGACAGTGATTTCCTTAATTGGAGATGGAAGCCAGACAAATGTGAGCTTCCTCTGTTCGATCCCAACACCTTTTTGGAAATTGTGAGAGGAAAGAAAATGGCATTTATCGGAGACTCTGTGGCTCGCAACCATGTGGAGTCACTTCTCTGCCTCTTGTCACAGGAAGAATCCCCAAAAGACGTTTACAAGGATTCTGAAGACAGGTTCAGGACATGGTATTTTCCTCAACATGACTTCACGCTCATGAAATTGTGGTCCAAATATCTTGTAGCTTCAGATGAGAGGATGATTAATGGTACAGGGACCGGCACCTTTGATTTGCATCTTGACCGGCTCGACGATCAATGGGCGCGGCATCTCCCCGATCTGGACTACGCAATCGTCTCAGGCGGGCATTGGTTTTTCCGGGTAATGTACTTACATGAAGGTGGTAACCTCACCGGATGCGTCTATTGCAATCAACCTAATGTCACTGACTACAACATTAGCCACGCCGTTCGGATGGCGTTTCGAACAGTTTTCAAGCACATCAAAGATTGCAAGAACTGCAGAGGTGGTCTCATGGCCTTGTTGAGGACATTTGCTCCTGCACACTTCGAGAACGGGGCTTGGAACACCGGGGGGTACTGTAACAGAACAAGTCCTTTCAGTGAGGCGCAGATTGATTTGGGCACTTTCGACTGGGAAATGAGGAACATTCAGATTGAGGAGTTTGAAAGAGGAAGAAGAGAAGGGGAGATGAAGGGGAAGAAGTTTGGGGTTTTGGATATAACCAGGGCCATGCTGATGAGGGCAGATGGGCACCCTGGAGCTCACTGGGGAAACCAGTGGATGAAGGGCTATAATGACTGCGTCCATTGGTGCATGCCAGGCCCTGTTGATTACTGGAACCATTTTCTAATGGCGATTATCAGAAACGAGGGAGGCTTAGTTTCTTAG

Protein Analysis

447

Amino Acids

51.61

Weight (kDa)

6.81

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 710, 1203
AccII CGCG 1 cut(s) 754
AciI CCGC 2 cut(s) 754, 792
AclWI GGATC 1 cut(s) 455
AcuI CTGAAG 2 cut(s) 618, 660
AfaI GTAC 6 cut(s) 13, 216, 341, 700, 818, 1028
AfiI CCNNNNNNNGG 2 cut(s) 769, 975
AgsI TTSAA 5 cut(s) 191, 351, 388, 925, 1118
AjnI CCWGG 3 cut(s) 1175, 1207, 1270
AluBI AGCT 6 cut(s) 31, 126, 354, 448, 674, 1214
AluI AGCT 6 cut(s) 31, 126, 354, 448, 674, 1214
Alw21I GWGCWC 1 cut(s) 1216
Alw26I GTCTC 3 cut(s) 507, 790, 965
AlwI GGATC 1 cut(s) 455
AlwNI CAGNNNCTG 1 cut(s) 1277
AoxI GGCC 5 cut(s) 175, 332, 966, 1179, 1273
AseI ATTAAT 1 cut(s) 693
Asp700I GAANNNNTTC 2 cut(s) 30, 383
AspLEI GCGC 2 cut(s) 754, 1060
AspS9I GGNCC 5 cut(s) 332, 657, 705, 1179, 1274
AsuC2I CCSGG 2 cut(s) 809, 1021
AsuHPI GGTGA 1 cut(s) 832
AsuII TTCGAA 1 cut(s) 913
AvaII GGWCC 2 cut(s) 657, 705
BaeGI GKGCMC 2 cut(s) 1076, 1206
BanI GGYRCC 2 cut(s) 710, 1203
BanII GRGCYC 1 cut(s) 1216
BbsI GAAGAC 1 cut(s) 606
Bbv12I GWGCWC 1 cut(s) 1216
BccI CCATC 3 cut(s) 420, 898, 1193
BceAI ACGGC 1 cut(s) 881
BciT130I CCWGG 3 cut(s) 1177, 1209, 1272
BclI TGATCA 1 cut(s) 241
BcnI CCSGG 2 cut(s) 809, 1021
BcoDI GTCTC 3 cut(s) 507, 790, 965
BfaI CTAG 1 cut(s) 104
BfmI CTRYAG 1 cut(s) 949
BisI GCNGC 1 cut(s) 755
BlsI GCNGC 1 cut(s) 756
Bme1390I CCNGG 5 cut(s) 809, 1021, 1177, 1209, 1272
Bme18I GGWCC 2 cut(s) 657, 705
BmgT120I GGNCC 5 cut(s) 332, 657, 705, 1179, 1274
BmiI GGNNCC 5 cut(s) 84, 706, 712, 1205, 1292
BmrFI CCNGG 5 cut(s) 809, 1021, 1177, 1209, 1272
BmrI ACTGGG 2 cut(s) 1093, 1228
BmsI GCATC 3 cut(s) 733, 766, 836
BmuI ACTGGG 2 cut(s) 1093, 1228
BpiI GAAGAC 1 cut(s) 606
BplI GAGNNNNNCTC 2 cut(s) 945, 977
BpmI CTGGAG 1 cut(s) 1230
Bpu14I TTCGAA 1 cut(s) 913
BpuMI CCSGG 2 cut(s) 809, 1021
BsaBI GATNNNNATC 1 cut(s) 723
BsaI GGTCTC 1 cut(s) 965
BsaJI CCNNGG 3 cut(s) 1020, 1176, 1207
BsaWI WCCGGW 1 cut(s) 842
BsaXI ACNNNNNCTCC 7 cut(s) 275, 305, 504, 534, 970, 1000, 1317
Bsc4I CCNNNNNNNGG 2 cut(s) 769, 975
Bse118I RCCGGY 2 cut(s) 707, 732
Bse1I ACTGG 5 cut(s) 317, 1088, 1223, 1228, 1292
Bse8I GATNNNNATC 1 cut(s) 723
BseBI CCWGG 3 cut(s) 1177, 1209, 1272
BseDI CCNNGG 3 cut(s) 1020, 1176, 1207
BseGI GGATG 4 cut(s) 693, 851, 909, 1239
BseJI GATNNNNATC 1 cut(s) 723
BseLI CCNNNNNNNGG 2 cut(s) 769, 975
BseMII CTCAG 1 cut(s) 801
BseNI ACTGG 5 cut(s) 317, 1088, 1223, 1228, 1292
BseRI GAGGAG 2 cut(s) 296, 1124
BseSI GKGCMC 2 cut(s) 1076, 1206
BsgI GTGCAG 1 cut(s) 975
Bsh1236I CGCG 1 cut(s) 754
BshFI GGCC 5 cut(s) 177, 334, 968, 1181, 1275
BshNI GGYRCC 2 cut(s) 710, 1203
BsiHKAI GWGCWC 1 cut(s) 1216
BsiSI CCGG 5 cut(s) 708, 733, 808, 843, 1020
BslFI GGGAC 2 cut(s) 416, 718
BslI CCNNNNNNNGG 2 cut(s) 769, 975
BsmAI GTCTC 3 cut(s) 507, 790, 965
BsmBI CGTCTC 1 cut(s) 790
BsmFI GGGAC 2 cut(s) 416, 718
BsnI GGCC 5 cut(s) 177, 334, 968, 1181, 1275
Bso31I GGTCTC 1 cut(s) 965
Bsp119I TTCGAA 1 cut(s) 913
Bsp1286I GDGCHC 3 cut(s) 1076, 1206, 1216
Bsp1407I TGTACA 1 cut(s) 339
Bsp143I GATC 4 cut(s) 241, 460, 742, 766
BspACI CCGC 2 cut(s) 754, 792
BspANI GGCC 5 cut(s) 177, 334, 968, 1181, 1275
BspCNI CTCAG 1 cut(s) 800
BspFNI CGCG 1 cut(s) 754
BspHI TCATGA 1 cut(s) 645
BspLI GGNNCC 5 cut(s) 84, 706, 712, 1205, 1292
BspMAI CTGCAG 1 cut(s) 953
BspPI GGATC 1 cut(s) 455
BspT104I TTCGAA 1 cut(s) 913
BspT107I GGYRCC 2 cut(s) 710, 1203
BspTNI GGTCTC 1 cut(s) 965
BsrFI RCCGGY 2 cut(s) 707, 732
BsrGI TGTACA 1 cut(s) 339
BsrI ACTGG 5 cut(s) 317, 1088, 1223, 1228, 1292
BssAI RCCGGY 2 cut(s) 707, 732
BssECI CCNNGG 3 cut(s) 1020, 1176, 1207
BssMI GATC 4 cut(s) 241, 460, 742, 766
Bst2UI CCWGG 3 cut(s) 1177, 1209, 1272
Bst4CI ACNGT 3 cut(s) 407, 919, 1031
Bst6I CTCTTC 1 cut(s) 1123
BstAPI GCANNNNNTGC 1 cut(s) 948
BstAUI TGTACA 1 cut(s) 339
BstBI TTCGAA 1 cut(s) 913
BstC8I GCNNGC 3 cut(s) 526, 794, 1268
BstDEI CTNAG 3 cut(s) 787, 1330, 1338
BstEII GGTNACC 1 cut(s) 833
BstENI CCTNNNNNAGG 1 cut(s) 973
BstF5I GGATG 4 cut(s) 693, 851, 909, 1239
BstFNI CGCG 1 cut(s) 754
BstHHI GCGC 2 cut(s) 754, 1060
BstKTI GATC 4 cut(s) 244, 463, 745, 769
BstMAI GTCTC 3 cut(s) 507, 790, 965
BstMBI GATC 4 cut(s) 241, 460, 742, 766
BstMWI GCNNNNNNNGC 3 cut(s) 855, 948, 1272
BstNI CCWGG 3 cut(s) 1177, 1209, 1272
BstNSI RCATGY 1 cut(s) 1270
BstPI GGTNACC 1 cut(s) 833
BstSCI CCNGG 5 cut(s) 807, 1019, 1175, 1207, 1270
BstSFI CTRYAG 1 cut(s) 949
BstSLI GKGCMC 2 cut(s) 1076, 1206
BstUI CGCG 1 cut(s) 754
BstV2I GAAGAC 1 cut(s) 606
BsuRI GGCC 5 cut(s) 177, 334, 968, 1181, 1275
BtsCI GGATG 4 cut(s) 693, 851, 909, 1239
BtsIMutI CAGTG 6 cut(s) 310, 412, 873, 1057, 1216, 1235
Cac8I GCNNGC 3 cut(s) 526, 794, 1268
CaiI CAGNNNCTG 1 cut(s) 1277
CciI TCATGA 1 cut(s) 645
CfoI GCGC 2 cut(s) 754, 1060
Cfr10I RCCGGY 2 cut(s) 707, 732
Cfr13I GGNCC 5 cut(s) 332, 657, 705, 1179, 1274
CseI GACGC 2 cut(s) 838, 1243
Csp6I GTAC 6 cut(s) 12, 215, 340, 699, 817, 1027
CviQI GTAC 6 cut(s) 12, 215, 340, 699, 817, 1027
DdeI CTNAG 3 cut(s) 787, 1330, 1338
DpnI GATC 4 cut(s) 243, 462, 744, 768
DpnII GATC 4 cut(s) 241, 460, 742, 766
Eam1104I CTCTTC 1 cut(s) 1123
EarI CTCTTC 1 cut(s) 1123
Ecl136II GAGCTC 1 cut(s) 1214
Eco147I AGGCCT 1 cut(s) 177
Eco24I GRGCYC 1 cut(s) 1216
Eco31I GGTCTC 1 cut(s) 965
Eco47I GGWCC 2 cut(s) 657, 705
Eco53kI GAGCTC 1 cut(s) 1214
Eco57I CTGAAG 2 cut(s) 618, 660
Eco91I GGTNACC 1 cut(s) 833
EcoICRI GAGCTC 1 cut(s) 1214
EcoNI CCTNNNNNAGG 1 cut(s) 973
EcoO109I RGGNCCY 1 cut(s) 1274
EcoO65I GGTNACC 1 cut(s) 833
EcoRII CCWGG 3 cut(s) 1175, 1207, 1270
EcoT38I GRGCYC 1 cut(s) 1216
Esp3I CGTCTC 1 cut(s) 790
FalI AAGNNNNNCTT 2 cut(s) 281, 313
FaqI GGGAC 2 cut(s) 416, 718
FauI CCCGC 1 cut(s) 785
FbaI TGATCA 1 cut(s) 241
Fnu4HI GCNGC 1 cut(s) 755
FokI GGATG 4 cut(s) 700, 858, 916, 1246
FriOI GRGCYC 1 cut(s) 1216
Fsp4HI GCNGC 1 cut(s) 755
FspBI CTAG 1 cut(s) 104
GlaI GCGC 2 cut(s) 753, 1059
GluI GCNGC 1 cut(s) 755
GsuI CTGGAG 1 cut(s) 1230
HaeIII GGCC 5 cut(s) 177, 334, 968, 1181, 1275
HapII CCGG 5 cut(s) 708, 733, 808, 843, 1020
HgaI GACGC 2 cut(s) 838, 1243
HhaI GCGC 2 cut(s) 754, 1060
Hin6I GCGC 2 cut(s) 752, 1058
HinP1I GCGC 2 cut(s) 752, 1058
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 6 cut(s) 316, 371, 515, 539, 569, 593
HpaII CCGG 5 cut(s) 708, 733, 808, 843, 1020
HphI GGTGA 1 cut(s) 832
Hpy166II GTNNAC 3 cut(s) 96, 342, 586
Hpy188I TCNGA 6 cut(s) 512, 598, 679, 903, 1104, 1316
Hpy188III TCNNGA 7 cut(s) 320, 368, 610, 646, 728, 770, 1000
Hpy8I GTNNAC 3 cut(s) 96, 342, 586
Hpy99I CGWCG 1 cut(s) 743
HpyAV CCTTC 7 cut(s) 215, 271, 393, 821, 1127, 1138, 1231
HpyCH4III ACNGT 3 cut(s) 407, 919, 1031
HpyCH4IV ACGT 1 cut(s) 582
HpyCH4V TGCA 7 cut(s) 212, 724, 858, 942, 951, 992, 1266
HpyF10VI GCNNNNNNNGC 3 cut(s) 855, 948, 1272
HpyF3I CTNAG 3 cut(s) 787, 1330, 1338
HpySE526I ACGT 1 cut(s) 582
HspAI GCGC 2 cut(s) 752, 1058
Ksp22I TGATCA 1 cut(s) 241
Kzo9I GATC 4 cut(s) 241, 460, 742, 766
LmnI GCTCC 3 cut(s) 72, 991, 1211
LweI GCATC 3 cut(s) 733, 766, 836
MaeI CTAG 1 cut(s) 104
MaeII ACGT 1 cut(s) 582
MaeIII GTNAC 7 cut(s) 293, 308, 540, 558, 833, 871, 1031
MalI GATC 4 cut(s) 243, 462, 744, 768
MboI GATC 4 cut(s) 241, 460, 742, 766
MboII GAAGA 5 cut(s) 578, 611, 1137, 1140, 1162
MhlI GDGCHC 3 cut(s) 1076, 1206, 1216
MluCI AATT 8 cut(s) 181, 323, 346, 363, 379, 418, 480, 650
MlyI GAGTC 2 cut(s) 509, 548
MmeI TCCRAC 1 cut(s) 286
MroXI GAANNNNTTC 2 cut(s) 30, 383
MseI TTAA 5 cut(s) 63, 180, 326, 417, 693
MslI CAYNNNNRTG 4 cut(s) 39, 644, 828, 1187
MspI CCGG 5 cut(s) 708, 733, 808, 843, 1020
MspR9I CCNGG 5 cut(s) 809, 1021, 1177, 1209, 1272
MvaI CCWGG 3 cut(s) 1177, 1209, 1272
MvnI CGCG 1 cut(s) 754
MwoI GCNNNNNNNGC 3 cut(s) 855, 948, 1272
NciI CCSGG 2 cut(s) 809, 1021
NdeII GATC 4 cut(s) 241, 460, 742, 766
NlaIV GGNNCC 5 cut(s) 84, 706, 712, 1205, 1292
NmuCI GTSAC 5 cut(s) 293, 308, 540, 558, 871
NspI RCATGY 1 cut(s) 1270
NspV TTCGAA 1 cut(s) 913
PaeI GCATGC 1 cut(s) 1270
PagI TCATGA 1 cut(s) 645
PceI AGGCCT 1 cut(s) 177
PdmI GAANNNNTTC 2 cut(s) 30, 383
PfeI GAWTC 4 cut(s) 316, 371, 569, 593
PflFI GACNNNGTC 1 cut(s) 1253
PkrI GCNGC 1 cut(s) 756
PleI GAGTC 2 cut(s) 509, 547
PpsI GAGTC 2 cut(s) 509, 547
PshBI ATTAAT 1 cut(s) 693
Psp124BI GAGCTC 1 cut(s) 1216
Psp6I CCWGG 3 cut(s) 1175, 1207, 1270
PspEI GGTNACC 1 cut(s) 833
PspGI CCWGG 3 cut(s) 1175, 1207, 1270
PspN4I GGNNCC 5 cut(s) 84, 706, 712, 1205, 1292
PspPI GGNCC 5 cut(s) 332, 657, 705, 1179, 1274
PstI CTGCAG 1 cut(s) 953
PstNI CAGNNNCTG 1 cut(s) 1277
PsyI GACNNNGTC 1 cut(s) 1253
RsaI GTAC 6 cut(s) 13, 216, 341, 700, 818, 1028
RsaNI GTAC 6 cut(s) 12, 215, 340, 699, 817, 1027
RseI CAYNNNNRTG 4 cut(s) 39, 644, 828, 1187
SacI GAGCTC 1 cut(s) 1216
SaqAI TTAA 5 cut(s) 63, 180, 326, 417, 693
SatI GCNGC 1 cut(s) 755
Sau3AI GATC 4 cut(s) 241, 460, 742, 766
Sau96I GGNCC 5 cut(s) 332, 657, 705, 1179, 1274
SchI GAGTC 2 cut(s) 509, 548
ScrFI CCNGG 5 cut(s) 809, 1021, 1177, 1209, 1272
SduI GDGCHC 3 cut(s) 1076, 1206, 1216
SfaNI GCATC 3 cut(s) 733, 766, 836
SfcI CTRYAG 1 cut(s) 949
SfuI TTCGAA 1 cut(s) 913
SinI GGWCC 2 cut(s) 657, 705
SmiMI CAYNNNNRTG 4 cut(s) 39, 644, 828, 1187
SphI GCATGC 1 cut(s) 1270
Sse9I AATT 8 cut(s) 181, 323, 346, 363, 379, 418, 480, 650
SseBI AGGCCT 1 cut(s) 177
SsiI CCGC 2 cut(s) 754, 792
SspMI CTAG 1 cut(s) 104
SstI GAGCTC 1 cut(s) 1216
StuI AGGCCT 1 cut(s) 177
StyD4I CCNGG 5 cut(s) 807, 1019, 1175, 1207, 1270
TaaI ACNGT 3 cut(s) 407, 919, 1031
TaiI ACGT 1 cut(s) 585
TaqI TCGA 5 cut(s) 459, 738, 913, 999, 1080
TasI AATT 8 cut(s) 181, 323, 346, 363, 379, 418, 480, 650
TatI WGTACW 4 cut(s) 11, 214, 339, 816
TauI GCSGC 1 cut(s) 757
TfiI GAWTC 4 cut(s) 316, 371, 569, 593
Tru1I TTAA 5 cut(s) 63, 180, 326, 417, 693
Tru9I TTAA 5 cut(s) 63, 180, 326, 417, 693
TscAI CASTG 6 cut(s) 317, 412, 880, 1057, 1223, 1235
TseFI GTSAC 5 cut(s) 293, 308, 540, 558, 871
Tsp45I GTSAC 5 cut(s) 293, 308, 540, 558, 871
TspDTI ATGAA 6 cut(s) 23, 197, 662, 840, 1157, 1250
TspRI CASTG 6 cut(s) 317, 412, 880, 1057, 1223, 1235
Tth111I GACNNNGTC 1 cut(s) 1253
VpaK11BI GGWCC 2 cut(s) 657, 705
VspI ATTAAT 1 cut(s) 693
XagI CCTNNNNNAGG 1 cut(s) 973
XceI RCATGY 1 cut(s) 1270
XcmI CCANNNNNNNNNTGG 1 cut(s) 472
XmnI GAANNNNTTC 2 cut(s) 30, 383
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.