Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0011047

Physical Location & Seq

Genomic Coordinates Forward (+)

79626482 .. 79628922

Gene Structure 2441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021969

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGAACATCTATGGTAAAAGGGAGAGAGGTCTGAACATGAACAGACTCATGCCTTTACTGCTTACTTCTTTAGCCATAGCCTCCATTTTCAGCTTCTTCCTTGCTTATTCCCCAAGCTCTTTTCCGATCACATCCAAACAAGCCCTTACTTCTGTTCAGAACCAACCAGATGATGATAATCCTAGCCATGCAGTACCAGTCAAGATGATCCCACCTCCAAAAAAGGAAGAGGAGTGTGACTTGTTTAAGGGTCAGTGGGTTCCCGATTTGAGAGGGCCATTGTATACGAATTCGAGCTGTAAGAGTATTCCGGAATCGAAGAATTGTTTCAAGAATGGGAGGATGGATAGGGATTTTCTGAATTGGAAATGGAAGCCGGAGAAATGTGAGCTGCCGGAGTTTGATCCCAAGGCGTTCTTGCAAATTGTTCGAGGGAAGAAGATGGCATTTGTTGGTGACTCTGTTGCTCGCAATCACGTTGAGTCTCTTCTATGCCTCTTGTCACAGGAGGAACTTCCCAAAGACATCTACAAGGATTCCGAAGACCGTTTCAGGACATGGTACTTTCCTCAACATGACTTCACCCTAAAGAAATTGTGGTCCAAATATCTTATAGCCGCAGACGAGAGGATGGTTAATGGCACTGGTTCAGGCGTTTTTGATCTGCACATAGACAGAATAGATGATGAATGGGCAAAGCACCTTCCGGGTTTAGACTACGCCATCATCTCGGACGGGCATTGGTTTTTTCGAGTATTATACCTATACAAAGGCAAAAAACTCATAGGATGTGTCTATTGCAACCAACCCAATATTACCGGCTTGAACACTAGCAATGCAGTTCGCATGGCGTTTCGATCTGCATTTAAATACATTAGCAATTGCAAGAATTGCAAGGGCGGGCTTCTGACCTTGTTGAGGACATTTGCACCGGCACATTTTGAGAACGGCGCTTGGAACACTGGAGGGTACTGCAATAGGACGAGTCCCTTACGTGAGGCACAAGTTGATTTTACTAAGTTTGATTGGGAAATGAGGAAGATTCAGATTAAGGAGATTGAAAGAGCAAGAAAAGAAGGGAAGAAGATTAAAGTTTTGGATATAACTAGGGCAATGTTGATGAGACCAGACGGGCACCCTGGACTTCACTGGGGAAATCAATGGATGAAGGGTTATAGTGACTGTGTTCATTGGTGCATGCCAGGCCCGGTTGATTACTGGAACAATTTTTTGATGGCACTTATCAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

418

Amino Acids

48.27

Weight (kDa)

9.09

Isoelectric Point (pI)

33.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	77 - 130	5.4e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	131 - 413	3.9e-92	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28150
fragaria_vesca	FvH4_6g50300 FvH4_6g50320 FvH4_6g50320 FvH4_6g50320
malus_domestica	MD09G1037400.v1.1 MD17G1038700.v1.1
prunus_persica	Prupe.3G280300_v2.0.a1
pyrus_communis	pycom111g03000 pycom17g03490
rosa_chinensis	RchiOBHm_Chr2g0170621
rosa_laevigata	RLG00000021969
rosa_multiflora	Rmu_sc0003787.1_g000032 Rmu_sc0010307.1_g000004
rosa_rugosa	Rorug02G0549800
rosa_samantha	Rh2AG622100 Rh2BG633400 Rh2CG602700 Rh2DG646200
rosa_wichuraiana	Rw2G051580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1134
AccI	GTMKAC	1 cut(s)	284
AccIII	TCCGGA	1 cut(s)	310
AciI	CCGC	2 cut(s)	618, 900
AclWI	GGATC	2 cut(s)	202, 398
AcsI	RAATTY	1 cut(s)	289
AfaI	GTAC	3 cut(s)	195, 563, 971
AfiI	CCNNNNNNNGG	1 cut(s)	918
AgsI	TTSAA	3 cut(s)	331, 826, 1061
AjnI	CCWGG	2 cut(s)	1138, 1201
AluBI	AGCT	4 cut(s)	93, 117, 297, 391
AluI	AGCT	4 cut(s)	93, 117, 297, 391
Alw26I	GTCTC	2 cut(s)	489, 1117
AlwI	GGATC	2 cut(s)	202, 398
Aor13HI	TCCGGA	1 cut(s)	310
AoxI	GGCC	2 cut(s)	275, 1204
ApeKI	GCWGC	1 cut(s)	391
ApoI	RAATTY	1 cut(s)	289
Asp700I	GAANNNNTTC	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	953
AspS9I	GGNCC	3 cut(s)	275, 600, 1205
AsuC2I	CCSGG	2 cut(s)	708, 1208
AsuHPI	GGTGA	2 cut(s)	467, 574
AvaII	GGWCC	1 cut(s)	600
BaeGI	GKGCMC	1 cut(s)	1137
BanI	GGYRCC	1 cut(s)	1134
BbsI	GAAGAC	1 cut(s)	549
BbvI	GCAGC	1 cut(s)	378
BccI	CCATC	5 cut(s)	337, 436, 625, 731, 1228
BceAI	ACGGC	1 cut(s)	964
BcgI	CGANNNNNNTGC	2 cut(s)	410, 444
BciT130I	CCWGG	2 cut(s)	1140, 1203
BcnI	CCSGG	2 cut(s)	708, 1208
BcoDI	GTCTC	2 cut(s)	489, 1117
BfaI	CTAG	3 cut(s)	183, 831, 1107
BfoI	RGCGCY	1 cut(s)	954
BisI	GCNGC	2 cut(s)	392, 618
BlsI	GCNGC	2 cut(s)	393, 619
Bme1390I	CCNGG	4 cut(s)	708, 1140, 1203, 1208
Bme18I	GGWCC	1 cut(s)	600
BmgT120I	GGNCC	3 cut(s)	275, 600, 1205
BmiI	GGNNCC	2 cut(s)	261, 1136
BmrFI	CCNGG	4 cut(s)	708, 1140, 1203, 1208
BmrI	ACTGGG	1 cut(s)	1159
BmuI	ACTGGG	1 cut(s)	1159
BpiI	GAAGAC	1 cut(s)	549
BpmI	CTGGAG	1 cut(s)	984
BpuMI	CCSGG	2 cut(s)	708, 1208
BsaAI	YACGTR	1 cut(s)	995
BsaBI	GATNNNNATC	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	1117
BsaJI	CCNNGG	2 cut(s)	408, 1138
BsaWI	WCCGGW	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	1 cut(s)	918
Bse118I	RCCGGY	2 cut(s)	818, 931
Bse1I	ACTGG	5 cut(s)	197, 649, 967, 1154, 1223
Bse3DI	GCAATG	2 cut(s)	841, 1119
Bse8I	GATNNNNATC	1 cut(s)	177
BseAI	TCCGGA	1 cut(s)	310
BseBI	CCWGG	2 cut(s)	1140, 1203
BseDI	CCNNGG	2 cut(s)	408, 1138
BseGI	GGATG	5 cut(s)	131, 348, 636, 794, 1170
BseJI	GATNNNNATC	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	918
BseMI	GCAATG	2 cut(s)	841, 1119
BseNI	ACTGG	5 cut(s)	197, 649, 967, 1154, 1223
BseRI	GAGGAG	1 cut(s)	245
BseSI	GKGCMC	1 cut(s)	1137
BseXI	GCAGC	1 cut(s)	378
BsgI	GTGCAG	1 cut(s)	650
BshFI	GGCC	2 cut(s)	277, 1206
BshNI	GGYRCC	1 cut(s)	1134
BsiSI	CCGG	7 cut(s)	311, 377, 395, 707, 819, 932, 1208
BslFI	GGGAC	1 cut(s)	972
BslI	CCNNNNNNNGG	1 cut(s)	918
BsmAI	GTCTC	2 cut(s)	489, 1117
BsmFI	GGGAC	1 cut(s)	972
BsnI	GGCC	2 cut(s)	277, 1206
Bso31I	GGTCTC	1 cut(s)	1117
Bsp1286I	GDGCHC	1 cut(s)	1137
Bsp13I	TCCGGA	1 cut(s)	310
Bsp143I	GATC	5 cut(s)	126, 207, 403, 661, 857
BspACI	CCGC	2 cut(s)	618, 900
BspANI	GGCC	2 cut(s)	277, 1206
BspEI	TCCGGA	1 cut(s)	310
BspLI	GGNNCC	2 cut(s)	261, 1136
BspPI	GGATC	2 cut(s)	202, 398
BspT107I	GGYRCC	1 cut(s)	1134
BspTNI	GGTCTC	1 cut(s)	1117
BsrDI	GCAATG	2 cut(s)	841, 1119
BsrFI	RCCGGY	2 cut(s)	818, 931
BsrI	ACTGG	5 cut(s)	197, 649, 967, 1154, 1223
BssAI	RCCGGY	2 cut(s)	818, 931
BssECI	CCNNGG	2 cut(s)	408, 1138
BssMI	GATC	5 cut(s)	126, 207, 403, 661, 857
BssNAI	GTATAC	1 cut(s)	285
BssT1I	CCWWGG	1 cut(s)	408
Bst1107I	GTATAC	1 cut(s)	285
Bst2UI	CCWGG	2 cut(s)	1140, 1203
Bst4CI	ACNGT	2 cut(s)	548, 1184
Bst6I	CTCTTC	2 cut(s)	222, 492
BstAPI	GCANNNNNTGC	1 cut(s)	891
BstBAI	YACGTR	1 cut(s)	995
BstC8I	GCNNGC	3 cut(s)	469, 902, 1199
BstDEI	CTNAG	1 cut(s)	1017
BstENI	CCTNNNNNAGG	1 cut(s)	916
BstF5I	GGATG	5 cut(s)	131, 348, 636, 794, 1170
BstH2I	RGCGCY	1 cut(s)	954
BstHHI	GCGC	1 cut(s)	953
BstKTI	GATC	5 cut(s)	129, 210, 406, 664, 860
BstMAI	GTCTC	2 cut(s)	489, 1117
BstMBI	GATC	5 cut(s)	126, 207, 403, 661, 857
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 891, 1203
BstNI	CCWGG	2 cut(s)	1140, 1203
BstNSI	RCATGY	1 cut(s)	1201
BstSCI	CCNGG	4 cut(s)	706, 1138, 1201, 1206
BstSLI	GKGCMC	1 cut(s)	1137
BstV1I	GCAGC	1 cut(s)	378
BstV2I	GAAGAC	1 cut(s)	549
BstZ17I	GTATAC	1 cut(s)	285
BsuRI	GGCC	2 cut(s)	277, 1206
BtsCI	GGATG	5 cut(s)	131, 348, 636, 794, 1170
BtsIMutI	CAGTG	4 cut(s)	260, 642, 960, 1147
Cac8I	GCNNGC	3 cut(s)	469, 902, 1199
CfoI	GCGC	1 cut(s)	953
Cfr10I	RCCGGY	2 cut(s)	818, 931
Cfr13I	GGNCC	3 cut(s)	275, 600, 1205
Csp6I	GTAC	3 cut(s)	194, 562, 970
CviAII	CATG	7 cut(s)	37, 49, 188, 558, 575, 847, 1198
CviQI	GTAC	3 cut(s)	194, 562, 970
DdeI	CTNAG	1 cut(s)	1017
DpnI	GATC	5 cut(s)	128, 209, 405, 663, 859
DpnII	GATC	5 cut(s)	126, 207, 403, 661, 857
DraI	TTTAAA	1 cut(s)	868
Eam1104I	CTCTTC	2 cut(s)	222, 492
EarI	CTCTTC	2 cut(s)	222, 492
Eco130I	CCWWGG	1 cut(s)	408
Eco31I	GGTCTC	1 cut(s)	1117
Eco47I	GGWCC	1 cut(s)	600
EcoNI	CCTNNNNNAGG	1 cut(s)	916
EcoRI	GAATTC	1 cut(s)	289
EcoRII	CCWGG	2 cut(s)	1138, 1201
EcoT14I	CCWWGG	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	7 cut(s)	40, 52, 191, 561, 578, 850, 1201
FalI	AAGNNNNNCTT	2 cut(s)	401, 433
FaqI	GGGAC	1 cut(s)	972
FatI	CATG	7 cut(s)	36, 48, 187, 557, 574, 846, 1197
FauI	CCCGC	1 cut(s)	893
FblI	GTMKAC	1 cut(s)	284
Fnu4HI	GCNGC	2 cut(s)	392, 618
FokI	GGATG	5 cut(s)	118, 355, 643, 801, 1177
Fsp4HI	GCNGC	2 cut(s)	392, 618
FspBI	CTAG	3 cut(s)	183, 831, 1107
GlaI	GCGC	1 cut(s)	952
GluI	GCNGC	2 cut(s)	392, 618
GsuI	CTGGAG	1 cut(s)	984
HaeII	RGCGCY	1 cut(s)	954
HaeIII	GGCC	2 cut(s)	277, 1206
HapII	CCGG	7 cut(s)	311, 377, 395, 707, 819, 932, 1208
HhaI	GCGC	1 cut(s)	953
Hin1II	CATG	7 cut(s)	40, 52, 191, 561, 578, 850, 1201
Hin6I	GCGC	1 cut(s)	951
HinP1I	GCGC	1 cut(s)	951
HinfI	GANTC	7 cut(s)	45, 314, 458, 482, 536, 985, 1042
HpaII	CCGG	7 cut(s)	311, 377, 395, 707, 819, 932, 1208
HphI	GGTGA	2 cut(s)	467, 574
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	9 cut(s)	33, 126, 159, 360, 541, 733, 909, 1047, 1247
Hpy188III	TCNNGA	5 cut(s)	202, 263, 311, 331, 553
Hpy8I	GTNNAC	1 cut(s)	285
HpyAV	CCTTC	3 cut(s)	713, 1070, 1162
HpyCH4III	ACNGT	2 cut(s)	548, 1184
HpyCH4IV	ACGT	2 cut(s)	477, 994
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 891, 1203
HpyF3I	CTNAG	1 cut(s)	1017
HpySE526I	ACGT	2 cut(s)	477, 994
Hsp92II	CATG	7 cut(s)	40, 52, 191, 561, 578, 850, 1201
HspAI	GCGC	1 cut(s)	951
Kpn2I	TCCGGA	1 cut(s)	310
Kzo9I	GATC	5 cut(s)	126, 207, 403, 661, 857
Lsp1109I	GCAGC	1 cut(s)	378
MaeI	CTAG	3 cut(s)	183, 831, 1107
MaeII	ACGT	2 cut(s)	477, 994
MaeIII	GTNAC	4 cut(s)	236, 455, 501, 1178
MalI	GATC	5 cut(s)	128, 209, 405, 663, 859
MboI	GATC	5 cut(s)	126, 207, 403, 661, 857
MfeI	CAATTG	1 cut(s)	880
MhlI	GDGCHC	1 cut(s)	1137
MluCI	AATT	9 cut(s)	289, 322, 361, 423, 593, 880, 889, 1225, 1249
MlyI	GAGTC	4 cut(s)	39, 452, 491, 994
MroI	TCCGGA	1 cut(s)	310
MroXI	GAANNNNTTC	1 cut(s)	326
MseI	TTAA	6 cut(s)	246, 636, 867, 1050, 1089, 1252
MspI	CCGG	7 cut(s)	311, 377, 395, 707, 819, 932, 1208
MspR9I	CCNGG	4 cut(s)	708, 1140, 1203, 1208
MunI	CAATTG	1 cut(s)	880
MvaI	CCWGG	2 cut(s)	1140, 1203
MwoI	GCNNNNNNNGC	3 cut(s)	58, 891, 1203
NciI	CCSGG	2 cut(s)	708, 1208
NdeII	GATC	5 cut(s)	126, 207, 403, 661, 857
NlaIII	CATG	7 cut(s)	40, 52, 191, 561, 578, 850, 1201
NlaIV	GGNNCC	2 cut(s)	261, 1136
NmuCI	GTSAC	4 cut(s)	236, 455, 501, 1178
NspI	RCATGY	1 cut(s)	1201
PaeI	GCATGC	1 cut(s)	1201
PdmI	GAANNNNTTC	1 cut(s)	326
PfeI	GAWTC	3 cut(s)	314, 536, 1042
PkrI	GCNGC	2 cut(s)	393, 619
PleI	GAGTC	4 cut(s)	39, 452, 490, 993
PpsI	GAGTC	4 cut(s)	39, 452, 490, 993
Ppu21I	YACGTR	1 cut(s)	995
Psp6I	CCWGG	2 cut(s)	1138, 1201
PspGI	CCWGG	2 cut(s)	1138, 1201
PspN4I	GGNNCC	2 cut(s)	261, 1136
PspPI	GGNCC	3 cut(s)	275, 600, 1205
RsaI	GTAC	3 cut(s)	195, 563, 971
RsaNI	GTAC	3 cut(s)	194, 562, 970
SaqAI	TTAA	6 cut(s)	246, 636, 867, 1050, 1089, 1252
SatI	GCNGC	2 cut(s)	392, 618
Sau3AI	GATC	5 cut(s)	126, 207, 403, 661, 857
Sau96I	GGNCC	3 cut(s)	275, 600, 1205
SchI	GAGTC	4 cut(s)	39, 452, 491, 994
ScrFI	CCNGG	4 cut(s)	708, 1140, 1203, 1208
SduI	GDGCHC	1 cut(s)	1137
SinI	GGWCC	1 cut(s)	600
SmiI	ATTTAAAT	1 cut(s)	868
SphI	GCATGC	1 cut(s)	1201
Sse9I	AATT	9 cut(s)	289, 322, 361, 423, 593, 880, 889, 1225, 1249
SsiI	CCGC	2 cut(s)	618, 900
SspI	AATATT	1 cut(s)	814
SspMI	CTAG	3 cut(s)	183, 831, 1107
StyD4I	CCNGG	4 cut(s)	706, 1138, 1201, 1206
StyI	CCWWGG	1 cut(s)	408
SwaI	ATTTAAAT	1 cut(s)	868
TaaI	ACNGT	2 cut(s)	548, 1184
TaiI	ACGT	2 cut(s)	480, 997
TaqI	TCGA	5 cut(s)	293, 317, 430, 751, 856
TasI	AATT	9 cut(s)	289, 322, 361, 423, 593, 880, 889, 1225, 1249
TauI	GCSGC	1 cut(s)	620
TfiI	GAWTC	3 cut(s)	314, 536, 1042
Tru1I	TTAA	6 cut(s)	246, 636, 867, 1050, 1089, 1252
Tru9I	TTAA	6 cut(s)	246, 636, 867, 1050, 1089, 1252
TscAI	CASTG	4 cut(s)	260, 649, 967, 1154
TseFI	GTSAC	4 cut(s)	236, 455, 501, 1178
TseI	GCWGC	1 cut(s)	391
Tsp45I	GTSAC	4 cut(s)	236, 455, 501, 1178
TspDTI	ATGAA	5 cut(s)	17, 53, 702, 1178, 1181
TspRI	CASTG	4 cut(s)	260, 649, 967, 1154
VpaK11BI	GGWCC	1 cut(s)	600
XagI	CCTNNNNNAGG	1 cut(s)	916
XapI	RAATTY	1 cut(s)	289
XceI	RCATGY	1 cut(s)	1201
XmiI	GTMKAC	1 cut(s)	284
XmnI	GAANNNNTTC	1 cut(s)	326
XspI	CTAG	3 cut(s)	183, 831, 1107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.