Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010307.1

Orthogroup ID

OG0011047

Physical Location & Seq

Genomic Coordinates Reverse (-)

10870 .. 13888

Gene Structure 3019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010307.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

atgaacagactcatgcctttcctgcttacttctttagccatagcctccattttcagcttcttccttgcttattccccaagctcttttccgatcacatccaaacaagcccttacttctgttcagaaccagccagatgatgataatcctagccatgcagtaccagtcaagatgatcccacctccaaaaaaggaagaggagtgtgacttgtttaagggtcagtgggttccggatttgagagggccattgtatacgaattcgagctgtaagagtattccggaatcgaagaattgtttcaagaatgggaggttggatagggattttctgaattggaaatggaagccggagaaatgtgagctgccggagtttgatcccaaggcgttcttgcaaattgttcgagggaaaaagatggcatttgttggtgactctgttgctcgcaatcacgttgagtctcttctatgcctcttgacacaggaggaacttcccaaagacatctacaaggattctgaagaccgtttcaggacatggtactttcctcaacatgacttcaccctaatgaaattgtggtccaaatatcttatagccgcagacgagaggatggttaatggcacgggttcaggcgtttttgatctgcacatagacagaatcgatgatgaatgggcaaagcaccttccgggtttagactacgccatcatctcggacgggcattggttttttcgggtattatacctatacaaaggcaaaaaactcataggatgtgtctattgcaaccaacccaatgttaccggcttgaacactagcaatgcagctcgcatggcctttcgatctgcatttaaatacattagcaattgcaagaattgcaagggcgggcttctgaccttgttgaggacatttgcaccggcacattttgagaacggggcttggaacactggagggtactgcaataggacgagtcccttacgtgaggcacaagttgattttacgaagtttgattgggaaatgaggaagattcagattgaggagattgaaagagcaagaaaagaagggaagaagattaaagttttggatataactagggcaatgttgatgagaccagacgggcaccctggacttcactggggaaatcaatggatgaagggttatagtgactgtgttcattggtgcatgccaggcccggttgattactggaacaattttttgatggcacttctcagaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

405

Amino Acids

46.83

Weight (kDa)

8.78

Isoelectric Point (pI)

34.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28150
fragaria_vesca	FvH4_6g50300 FvH4_6g50320 FvH4_6g50320 FvH4_6g50320
malus_domestica	MD09G1037400.v1.1 MD17G1038700.v1.1
prunus_persica	Prupe.3G280300_v2.0.a1
pyrus_communis	pycom111g03000 pycom17g03490
rosa_chinensis	RchiOBHm_Chr2g0170621
rosa_laevigata	RLG00000021969
rosa_multiflora	Rmu_sc0003787.1_g000032 Rmu_sc0010307.1_g000004
rosa_rugosa	Rorug02G0549800
rosa_samantha	Rh2AG622100 Rh2BG633400 Rh2CG602700 Rh2DG646200
rosa_wichuraiana	Rw2G051580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1098
AccI	GTMKAC	1 cut(s)	248
AccIII	TCCGGA	2 cut(s)	226, 274
AciI	CCGC	2 cut(s)	582, 864
AclWI	GGATC	2 cut(s)	166, 362
AcsI	RAATTY	1 cut(s)	253
AcuI	CTGAAG	1 cut(s)	525
AfaI	GTAC	3 cut(s)	159, 527, 935
AfiI	CCNNNNNNNGG	1 cut(s)	882
AgsI	TTSAA	3 cut(s)	295, 790, 1025
AjnI	CCWGG	2 cut(s)	1102, 1165
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AluBI	AGCT	5 cut(s)	57, 81, 261, 355, 806
AluI	AGCT	5 cut(s)	57, 81, 261, 355, 806
Alw26I	GTCTC	2 cut(s)	453, 1081
AlwI	GGATC	2 cut(s)	166, 362
Aor13HI	TCCGGA	2 cut(s)	226, 274
AoxI	GGCC	3 cut(s)	239, 813, 1168
ApeKI	GCWGC	2 cut(s)	355, 803
ApoI	RAATTY	1 cut(s)	253
Asp700I	GAANNNNTTC	1 cut(s)	290
AspS9I	GGNCC	3 cut(s)	239, 564, 1169
AsuC2I	CCSGG	2 cut(s)	672, 1172
AsuHPI	GGTGA	2 cut(s)	431, 538
AvaII	GGWCC	1 cut(s)	564
BaeGI	GKGCMC	1 cut(s)	1101
BanI	GGYRCC	1 cut(s)	1098
BbsI	GAAGAC	1 cut(s)	513
BbvI	GCAGC	2 cut(s)	342, 815
BccI	CCATC	4 cut(s)	400, 589, 695, 1192
BcgI	CGANNNNNNTGC	2 cut(s)	374, 408
BciT130I	CCWGG	2 cut(s)	1104, 1167
BcnI	CCSGG	2 cut(s)	672, 1172
BcoDI	GTCTC	2 cut(s)	453, 1081
BfaI	CTAG	3 cut(s)	147, 795, 1071
BisI	GCNGC	3 cut(s)	356, 582, 804
BlsI	GCNGC	3 cut(s)	357, 583, 805
Bme1390I	CCNGG	4 cut(s)	672, 1104, 1167, 1172
Bme18I	GGWCC	1 cut(s)	564
BmgT120I	GGNCC	3 cut(s)	239, 564, 1169
BmiI	GGNNCC	2 cut(s)	225, 1100
BmrFI	CCNGG	4 cut(s)	672, 1104, 1167, 1172
BmrI	ACTGGG	1 cut(s)	1123
BmuI	ACTGGG	1 cut(s)	1123
BpiI	GAAGAC	1 cut(s)	513
BpmI	CTGGAG	1 cut(s)	948
BpuMI	CCSGG	2 cut(s)	672, 1172
Bsa29I	ATCGAT	1 cut(s)	645
BsaAI	YACGTR	1 cut(s)	959
BsaBI	GATNNNNATC	1 cut(s)	141
BsaI	GGTCTC	1 cut(s)	1081
BsaJI	CCNNGG	2 cut(s)	372, 1102
BsaWI	WCCGGW	2 cut(s)	226, 274
Bsc4I	CCNNNNNNNGG	1 cut(s)	882
Bse118I	RCCGGY	2 cut(s)	782, 895
Bse1I	ACTGG	4 cut(s)	161, 931, 1118, 1187
Bse3DI	GCAATG	2 cut(s)	805, 1083
Bse8I	GATNNNNATC	1 cut(s)	141
BseAI	TCCGGA	2 cut(s)	226, 274
BseBI	CCWGG	2 cut(s)	1104, 1167
BseCI	ATCGAT	1 cut(s)	645
BseDI	CCNNGG	2 cut(s)	372, 1102
BseGI	GGATG	4 cut(s)	95, 600, 758, 1134
BseJI	GATNNNNATC	1 cut(s)	141
BseLI	CCNNNNNNNGG	1 cut(s)	882
BseMI	GCAATG	2 cut(s)	805, 1083
BseNI	ACTGG	4 cut(s)	161, 931, 1118, 1187
BseRI	GAGGAG	2 cut(s)	209, 1031
BseSI	GKGCMC	1 cut(s)	1101
BseXI	GCAGC	2 cut(s)	342, 815
BsgI	GTGCAG	1 cut(s)	614
BshFI	GGCC	3 cut(s)	241, 815, 1170
BshNI	GGYRCC	1 cut(s)	1098
BshVI	ATCGAT	1 cut(s)	645
BsiSI	CCGG	8 cut(s)	227, 275, 341, 359, 671, 783, 896, 1172
BslFI	GGGAC	1 cut(s)	936
BslI	CCNNNNNNNGG	1 cut(s)	882
BsmAI	GTCTC	2 cut(s)	453, 1081
BsmFI	GGGAC	1 cut(s)	936
BsnI	GGCC	3 cut(s)	241, 815, 1170
Bso31I	GGTCTC	1 cut(s)	1081
Bsp1286I	GDGCHC	1 cut(s)	1101
Bsp13I	TCCGGA	2 cut(s)	226, 274
Bsp143I	GATC	5 cut(s)	90, 171, 367, 625, 821
BspACI	CCGC	2 cut(s)	582, 864
BspANI	GGCC	3 cut(s)	241, 815, 1170
BspDI	ATCGAT	1 cut(s)	645
BspEI	TCCGGA	2 cut(s)	226, 274
BspLI	GGNNCC	2 cut(s)	225, 1100
BspPI	GGATC	2 cut(s)	166, 362
BspT107I	GGYRCC	1 cut(s)	1098
BspTNI	GGTCTC	1 cut(s)	1081
BsrDI	GCAATG	2 cut(s)	805, 1083
BsrFI	RCCGGY	2 cut(s)	782, 895
BsrI	ACTGG	4 cut(s)	161, 931, 1118, 1187
BssAI	RCCGGY	2 cut(s)	782, 895
BssECI	CCNNGG	2 cut(s)	372, 1102
BssMI	GATC	5 cut(s)	90, 171, 367, 625, 821
BssNAI	GTATAC	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	372
Bst1107I	GTATAC	1 cut(s)	249
Bst2UI	CCWGG	2 cut(s)	1104, 1167
Bst4CI	ACNGT	2 cut(s)	512, 1148
Bst6I	CTCTTC	2 cut(s)	186, 456
BstAPI	GCANNNNNTGC	1 cut(s)	855
BstBAI	YACGTR	1 cut(s)	959
BstC8I	GCNNGC	4 cut(s)	433, 808, 866, 1163
BstDEI	CTNAG	1 cut(s)	1208
BstENI	CCTNNNNNAGG	1 cut(s)	880
BstF5I	GGATG	4 cut(s)	95, 600, 758, 1134
BstKTI	GATC	5 cut(s)	93, 174, 370, 628, 824
BstMAI	GTCTC	2 cut(s)	453, 1081
BstMBI	GATC	5 cut(s)	90, 171, 367, 625, 821
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 812, 855, 1167
BstNI	CCWGG	2 cut(s)	1104, 1167
BstNSI	RCATGY	1 cut(s)	1165
BstSCI	CCNGG	4 cut(s)	670, 1102, 1165, 1170
BstSLI	GKGCMC	1 cut(s)	1101
BstV1I	GCAGC	2 cut(s)	342, 815
BstV2I	GAAGAC	1 cut(s)	513
BstZ17I	GTATAC	1 cut(s)	249
Bsu15I	ATCGAT	1 cut(s)	645
BsuRI	GGCC	3 cut(s)	241, 815, 1170
BsuTUI	ATCGAT	1 cut(s)	645
BtsCI	GGATG	4 cut(s)	95, 600, 758, 1134
BtsIMutI	CAGTG	3 cut(s)	224, 924, 1111
Cac8I	GCNNGC	4 cut(s)	433, 808, 866, 1163
Cfr10I	RCCGGY	2 cut(s)	782, 895
Cfr13I	GGNCC	3 cut(s)	239, 564, 1169
ClaI	ATCGAT	1 cut(s)	645
Csp6I	GTAC	3 cut(s)	158, 526, 934
CviAII	CATG	6 cut(s)	13, 152, 522, 539, 811, 1162
CviQI	GTAC	3 cut(s)	158, 526, 934
DdeI	CTNAG	1 cut(s)	1208
DpnI	GATC	5 cut(s)	92, 173, 369, 627, 823
DpnII	GATC	5 cut(s)	90, 171, 367, 625, 821
DraI	TTTAAA	1 cut(s)	832
Eam1104I	CTCTTC	2 cut(s)	186, 456
EarI	CTCTTC	2 cut(s)	186, 456
Eco130I	CCWWGG	1 cut(s)	372
Eco31I	GGTCTC	1 cut(s)	1081
Eco47I	GGWCC	1 cut(s)	564
Eco57I	CTGAAG	1 cut(s)	525
EcoNI	CCTNNNNNAGG	1 cut(s)	880
EcoRI	GAATTC	1 cut(s)	253
EcoRII	CCWGG	2 cut(s)	1102, 1165
EcoT14I	CCWWGG	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	6 cut(s)	16, 155, 525, 542, 814, 1165
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FaqI	GGGAC	1 cut(s)	936
FatI	CATG	6 cut(s)	12, 151, 521, 538, 810, 1161
FauI	CCCGC	1 cut(s)	857
FblI	GTMKAC	1 cut(s)	248
Fnu4HI	GCNGC	3 cut(s)	356, 582, 804
FokI	GGATG	4 cut(s)	82, 607, 765, 1141
Fsp4HI	GCNGC	3 cut(s)	356, 582, 804
FspBI	CTAG	3 cut(s)	147, 795, 1071
GluI	GCNGC	3 cut(s)	356, 582, 804
GsuI	CTGGAG	1 cut(s)	948
HaeIII	GGCC	3 cut(s)	241, 815, 1170
HapII	CCGG	8 cut(s)	227, 275, 341, 359, 671, 783, 896, 1172
Hin1II	CATG	6 cut(s)	16, 155, 525, 542, 814, 1165
HinfI	GANTC	8 cut(s)	9, 278, 422, 446, 500, 642, 949, 1006
HpaII	CCGG	8 cut(s)	227, 275, 341, 359, 671, 783, 896, 1172
HphI	GGTGA	2 cut(s)	431, 538
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188I	TCNGA	8 cut(s)	90, 123, 324, 505, 697, 873, 1011, 1211
Hpy188III	TCNNGA	6 cut(s)	166, 227, 275, 295, 463, 517
Hpy8I	GTNNAC	1 cut(s)	249
HpyAV	CCTTC	3 cut(s)	677, 1034, 1126
HpyCH4III	ACNGT	2 cut(s)	512, 1148
HpyCH4IV	ACGT	2 cut(s)	441, 958
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 812, 855, 1167
HpyF3I	CTNAG	1 cut(s)	1208
HpySE526I	ACGT	2 cut(s)	441, 958
Hsp92II	CATG	6 cut(s)	16, 155, 525, 542, 814, 1165
Kpn2I	TCCGGA	2 cut(s)	226, 274
Kzo9I	GATC	5 cut(s)	90, 171, 367, 625, 821
Lsp1109I	GCAGC	2 cut(s)	342, 815
MaeI	CTAG	3 cut(s)	147, 795, 1071
MaeII	ACGT	2 cut(s)	441, 958
MaeIII	GTNAC	4 cut(s)	200, 419, 778, 1142
MalI	GATC	5 cut(s)	92, 173, 369, 627, 823
MboI	GATC	5 cut(s)	90, 171, 367, 625, 821
MboII	GAAGA	8 cut(s)	52, 203, 295, 443, 518, 1015, 1057, 1060
MfeI	CAATTG	1 cut(s)	844
MhlI	GDGCHC	1 cut(s)	1101
MluCI	AATT	9 cut(s)	253, 286, 325, 387, 557, 844, 853, 1189, 1213
MlyI	GAGTC	4 cut(s)	3, 416, 455, 958
MmeI	TCCRAC	1 cut(s)	288
MroI	TCCGGA	2 cut(s)	226, 274
MroXI	GAANNNNTTC	1 cut(s)	290
MseI	TTAA	5 cut(s)	210, 600, 831, 1053, 1216
MslI	CAYNNNNRTG	1 cut(s)	551
MspI	CCGG	8 cut(s)	227, 275, 341, 359, 671, 783, 896, 1172
MspR9I	CCNGG	4 cut(s)	672, 1104, 1167, 1172
MunI	CAATTG	1 cut(s)	844
MvaI	CCWGG	2 cut(s)	1104, 1167
MwoI	GCNNNNNNNGC	4 cut(s)	22, 812, 855, 1167
NciI	CCSGG	2 cut(s)	672, 1172
NdeII	GATC	5 cut(s)	90, 171, 367, 625, 821
NlaIII	CATG	6 cut(s)	16, 155, 525, 542, 814, 1165
NlaIV	GGNNCC	2 cut(s)	225, 1100
NmuCI	GTSAC	3 cut(s)	200, 419, 1142
NspI	RCATGY	1 cut(s)	1165
PaeI	GCATGC	1 cut(s)	1165
PdmI	GAANNNNTTC	1 cut(s)	290
PfeI	GAWTC	4 cut(s)	278, 500, 642, 1006
PkrI	GCNGC	3 cut(s)	357, 583, 805
PleI	GAGTC	4 cut(s)	3, 416, 454, 957
PpsI	GAGTC	4 cut(s)	3, 416, 454, 957
Ppu21I	YACGTR	1 cut(s)	959
Psp6I	CCWGG	2 cut(s)	1102, 1165
PspGI	CCWGG	2 cut(s)	1102, 1165
PspN4I	GGNNCC	2 cut(s)	225, 1100
PspPI	GGNCC	3 cut(s)	239, 564, 1169
RsaI	GTAC	3 cut(s)	159, 527, 935
RsaNI	GTAC	3 cut(s)	158, 526, 934
RseI	CAYNNNNRTG	1 cut(s)	551
SaqAI	TTAA	5 cut(s)	210, 600, 831, 1053, 1216
SatI	GCNGC	3 cut(s)	356, 582, 804
Sau3AI	GATC	5 cut(s)	90, 171, 367, 625, 821
Sau96I	GGNCC	3 cut(s)	239, 564, 1169
SchI	GAGTC	4 cut(s)	3, 416, 455, 958
ScrFI	CCNGG	4 cut(s)	672, 1104, 1167, 1172
SduI	GDGCHC	1 cut(s)	1101
SinI	GGWCC	1 cut(s)	564
SmiI	ATTTAAAT	1 cut(s)	832
SmiMI	CAYNNNNRTG	1 cut(s)	551
SphI	GCATGC	1 cut(s)	1165
Sse9I	AATT	9 cut(s)	253, 286, 325, 387, 557, 844, 853, 1189, 1213
SsiI	CCGC	2 cut(s)	582, 864
SspMI	CTAG	3 cut(s)	147, 795, 1071
StyD4I	CCNGG	4 cut(s)	670, 1102, 1165, 1170
StyI	CCWWGG	1 cut(s)	372
SwaI	ATTTAAAT	1 cut(s)	832
TaaI	ACNGT	2 cut(s)	512, 1148
TaiI	ACGT	2 cut(s)	444, 961
TaqI	TCGA	5 cut(s)	257, 281, 394, 645, 820
TasI	AATT	9 cut(s)	253, 286, 325, 387, 557, 844, 853, 1189, 1213
TauI	GCSGC	1 cut(s)	584
TfiI	GAWTC	4 cut(s)	278, 500, 642, 1006
Tru1I	TTAA	5 cut(s)	210, 600, 831, 1053, 1216
Tru9I	TTAA	5 cut(s)	210, 600, 831, 1053, 1216
TscAI	CASTG	3 cut(s)	224, 931, 1118
TseFI	GTSAC	3 cut(s)	200, 419, 1142
TseI	GCWGC	2 cut(s)	355, 803
Tsp45I	GTSAC	3 cut(s)	200, 419, 1142
TspDTI	ATGAA	5 cut(s)	17, 569, 666, 1142, 1145
TspRI	CASTG	3 cut(s)	224, 931, 1118
VpaK11BI	GGWCC	1 cut(s)	564
XagI	CCTNNNNNAGG	1 cut(s)	880
XapI	RAATTY	1 cut(s)	253
XceI	RCATGY	1 cut(s)	1165
XmiI	GTMKAC	1 cut(s)	248
XmnI	GAANNNNTTC	1 cut(s)	290
XspI	CTAG	3 cut(s)	147, 795, 1071

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.