Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011047

Physical Location & Seq

Genomic Coordinates Forward (+)

37448343 .. 37451514

Gene Structure 3172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g50300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGAATGCTTCTGTCAACATCTATGGGAAAAGAGAGAGAGGTCTCAACATGAACAGACTCATGCCTTTCCTCCTCACTTCTTTAGCCGTAGCCTCCATTTTCAGCTTCTTCCTCGCTTATTCCCCAAACCCTATTCCGATCACATCCAAAGAAGCCCTTAATTCTGTTGTTCATGATCAGAACCTGCAGCCAGATCATGATCATCTTAGCCATGCAGCACCAGTCAGGCTGATCCCACCTCCAAAAAAGAAAGAGGTGTGTGACTTGTTTAAGGGTCAGTGGGTTCCGGATTCGAGAGGGCCATTGTATACGAATTCAACATGTAAGACTATTCCTGAATCGAAGGATTGTTTCAAGAATGGGAGGATGGATAGGGACTATGTGAATTGGAGATGGAAGCCGGATAAATGCGAGCTGCCGGAGTTTGATCCCAAGGCGTTTTTGGAAATCGTTAGAGGAAAGAAGATGGCATTTGTTGGTGACTCTGTTGCTCGCAATCACTTTGAATCTCTTCTATGCCTATTGTCTCAGGAGGAACTCCCCAAAGACATTTACGAGGATTCTGAAGATCGTTTCAGGACATGGTACTTTCCTCAACATGACTTCAATCTAATGAAATTGTGGACCAAATATCTTATAGCCGCAGACGAGAGGATGGTAAATGGCACTGGATCCGGCATCTTCGATTTGCACATAGACAAAATCGATGATGAATGGGGAAAGCACCTACCCGATTTAGACTACGCCATCATCTCGGACGGGCATTGGTTTTTTCGAGTATTATACCTGTACAAAGGTAACAAACTTATAGGATGTGTCTATTGCAACCAACCTAATATTACTCGCTTCAACACTGGCAACGCAGTTCGTATGGCGTTTCGATCTGCCTTTAAGTACATTAGCACTTGCAAGAACTGCAAAGGGGGACTTCTGACCGTTTTGAGGACATTTGCACCAGCACATTTTGAGAATGGGGCTTGGAATACCGGAGGGTACTGCAATAGGACAAGTCCCTTTGGTGAGGCAGAAGTTGATTACAAGACGTTTGATTGGGAAATGAGGAACATTCAGATTAAGGAGATAAATGATGCAAGAAGAAACAACAGGAAGCAGTTTAGGGTTTTGGATATAACTAGGGCCATGTTGATGAGACCAGACGGGCACCCTGGAATTCATTGGGGAAATCAATGGATGAAGGGTTATAGTGACTGTGTTCATTGGTGCATGCCAGGCCCGGTTGATTACTGGAACAATTTTTTGATGGCACTTATCAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

427

Amino Acids

49.51

Weight (kDa)

8.59

Isoelectric Point (pI)

32.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	86 - 138	1.9e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	139 - 422	3.1e-90	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28150
fragaria_vesca	FvH4_6g50300 FvH4_6g50320 FvH4_6g50320 FvH4_6g50320
malus_domestica	MD09G1037400.v1.1 MD17G1038700.v1.1
prunus_persica	Prupe.3G280300_v2.0.a1
pyrus_communis	pycom111g03000 pycom17g03490
rosa_chinensis	RchiOBHm_Chr2g0170621
rosa_laevigata	RLG00000021969
rosa_multiflora	Rmu_sc0003787.1_g000032 Rmu_sc0010307.1_g000004
rosa_rugosa	Rorug02G0549800
rosa_samantha	Rh2AG622100 Rh2BG633400 Rh2CG602700 Rh2DG646200
rosa_wichuraiana	Rw2G051580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	192
AccB1I	GGYRCC	1 cut(s)	1161
AccI	GTMKAC	1 cut(s)	308
AccIII	TCCGGA	1 cut(s)	286
AciI	CCGC	1 cut(s)	642
AclWI	GGATC	4 cut(s)	226, 422, 666, 679
AcsI	RAATTY	2 cut(s)	313, 1170
AcuI	CTGAAG	1 cut(s)	585
AfaI	GTAC	4 cut(s)	587, 791, 896, 995
AfiI	CCNNNNNNNGG	1 cut(s)	942
AflIII	ACRYGT	1 cut(s)	320
AgsI	TTSAA	5 cut(s)	318, 355, 506, 607, 850
AjnI	CCWGG	2 cut(s)	1165, 1228
AluBI	AGCT	2 cut(s)	105, 415
AluI	AGCT	2 cut(s)	105, 415
Alw26I	GTCTC	3 cut(s)	47, 531, 1144
AlwI	GGATC	4 cut(s)	226, 422, 666, 679
AlwNI	CAGNNNCTG	1 cut(s)	184
Aor13HI	TCCGGA	1 cut(s)	286
AoxI	GGCC	3 cut(s)	299, 1137, 1231
ApeKI	GCWGC	3 cut(s)	187, 215, 415
ApoI	RAATTY	2 cut(s)	313, 1170
Asp700I	GAANNNNTTC	1 cut(s)	510
AspS9I	GGNCC	4 cut(s)	299, 624, 1137, 1232
AsuC2I	CCSGG	1 cut(s)	1235
AsuHPI	GGTGA	2 cut(s)	491, 1031
AvaII	GGWCC	1 cut(s)	624
BaeGI	GKGCMC	1 cut(s)	1164
BamHI	GGATCC	1 cut(s)	671
BanI	GGYRCC	1 cut(s)	1161
BbvI	GCAGC	3 cut(s)	199, 227, 402
BccI	CCATC	6 cut(s)	361, 387, 460, 649, 755, 1255
BceAI	ACGGC	1 cut(s)	71
BciT130I	CCWGG	2 cut(s)	1167, 1230
BclI	TGATCA	2 cut(s)	175, 199
BcnI	CCSGG	1 cut(s)	1235
BcoDI	GTCTC	3 cut(s)	47, 531, 1144
BfaI	CTAG	1 cut(s)	1134
BfmI	CTRYAG	1 cut(s)	185
BfuAI	ACCTGC	1 cut(s)	192
BisI	GCNGC	4 cut(s)	188, 216, 416, 642
BlsI	GCNGC	4 cut(s)	189, 217, 417, 643
Bme1390I	CCNGG	3 cut(s)	1167, 1230, 1235
Bme18I	GGWCC	1 cut(s)	624
BmgT120I	GGNCC	4 cut(s)	299, 624, 1137, 1232
BmiI	GGNNCC	3 cut(s)	285, 673, 1163
BmrFI	CCNGG	3 cut(s)	1167, 1230, 1235
BmsI	GCATC	2 cut(s)	687, 1078
BpuMI	CCSGG	1 cut(s)	1235
Bsa29I	ATCGAT	1 cut(s)	705
BsaBI	GATNNNNATC	1 cut(s)	198
BsaI	GGTCTC	2 cut(s)	47, 1144
BsaJI	CCNNGG	2 cut(s)	432, 1165
BsaWI	WCCGGW	2 cut(s)	286, 986
Bsc4I	CCNNNNNNNGG	1 cut(s)	942
Bse1I	ACTGG	4 cut(s)	221, 673, 859, 1250
Bse8I	GATNNNNATC	1 cut(s)	198
BseAI	TCCGGA	1 cut(s)	286
BseBI	CCWGG	2 cut(s)	1167, 1230
BseCI	ATCGAT	1 cut(s)	705
BseDI	CCNNGG	2 cut(s)	432, 1165
BseGI	GGATG	5 cut(s)	143, 372, 660, 818, 1197
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	942
BseMII	CTCAG	1 cut(s)	542
BseNI	ACTGG	4 cut(s)	221, 673, 859, 1250
BseRI	GAGGAG	1 cut(s)	62
BseSI	GKGCMC	1 cut(s)	1164
BseXI	GCAGC	3 cut(s)	199, 227, 402
BshFI	GGCC	3 cut(s)	301, 1139, 1233
BshNI	GGYRCC	1 cut(s)	1161
BshVI	ATCGAT	1 cut(s)	705
BsiSI	CCGG	6 cut(s)	287, 401, 419, 675, 987, 1235
BslFI	GGGAC	3 cut(s)	389, 939, 996
BslI	CCNNNNNNNGG	1 cut(s)	942
BsmAI	GTCTC	3 cut(s)	47, 531, 1144
BsmFI	GGGAC	3 cut(s)	389, 939, 996
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	3 cut(s)	301, 1139, 1233
Bso31I	GGTCTC	2 cut(s)	47, 1144
Bsp1286I	GDGCHC	1 cut(s)	1164
Bsp13I	TCCGGA	1 cut(s)	286
Bsp1407I	TGTACA	1 cut(s)	789
Bsp143I	GATC	9 cut(s)	138, 175, 193, 199, 231, 427, 568, 671, 881
BspACI	CCGC	1 cut(s)	642
BspANI	GGCC	3 cut(s)	301, 1139, 1233
BspCNI	CTCAG	1 cut(s)	541
BspDI	ATCGAT	1 cut(s)	705
BspEI	TCCGGA	1 cut(s)	286
BspHI	TCATGA	2 cut(s)	172, 196
BspLI	GGNNCC	3 cut(s)	285, 673, 1163
BspMAI	CTGCAG	1 cut(s)	189
BspMI	ACCTGC	1 cut(s)	192
BspPI	GGATC	4 cut(s)	226, 422, 666, 679
BspT107I	GGYRCC	1 cut(s)	1161
BspTNI	GGTCTC	2 cut(s)	47, 1144
BsrGI	TGTACA	1 cut(s)	789
BsrI	ACTGG	4 cut(s)	221, 673, 859, 1250
BssECI	CCNNGG	2 cut(s)	432, 1165
BssMI	GATC	9 cut(s)	138, 175, 193, 199, 231, 427, 568, 671, 881
BssNAI	GTATAC	1 cut(s)	309
BssT1I	CCWWGG	1 cut(s)	432
Bst1107I	GTATAC	1 cut(s)	309
Bst2UI	CCWGG	2 cut(s)	1167, 1230
Bst4CI	ACNGT	2 cut(s)	937, 1211
Bst6I	CTCTTC	1 cut(s)	516
BstAPI	GCANNNNNTGC	1 cut(s)	915
BstAUI	TGTACA	1 cut(s)	789
BstC8I	GCNNGC	3 cut(s)	413, 493, 1226
BstDEI	CTNAG	2 cut(s)	206, 528
BstF5I	GGATG	5 cut(s)	143, 372, 660, 818, 1197
BstKTI	GATC	9 cut(s)	141, 178, 196, 202, 234, 430, 571, 674, 884
BstMAI	GTCTC	3 cut(s)	47, 531, 1144
BstMBI	GATC	9 cut(s)	138, 175, 193, 199, 231, 427, 568, 671, 881
BstMWI	GCNNNNNNNGC	2 cut(s)	915, 1230
BstNI	CCWGG	2 cut(s)	1167, 1230
BstNSI	RCATGY	2 cut(s)	324, 1228
BstSCI	CCNGG	3 cut(s)	1165, 1228, 1233
BstSFI	CTRYAG	1 cut(s)	185
BstSLI	GKGCMC	1 cut(s)	1164
BstV1I	GCAGC	3 cut(s)	199, 227, 402
BstX2I	RGATCY	1 cut(s)	671
BstYI	RGATCY	1 cut(s)	671
BstZ17I	GTATAC	1 cut(s)	309
Bsu15I	ATCGAT	1 cut(s)	705
BsuRI	GGCC	3 cut(s)	301, 1139, 1233
BsuTUI	ATCGAT	1 cut(s)	705
BtsCI	GGATG	5 cut(s)	143, 372, 660, 818, 1197
BtsIMutI	CAGTG	3 cut(s)	284, 666, 852
BveI	ACCTGC	1 cut(s)	192
Cac8I	GCNNGC	3 cut(s)	413, 493, 1226
CaiI	CAGNNNCTG	1 cut(s)	184
CciI	TCATGA	2 cut(s)	172, 196
Cfr13I	GGNCC	4 cut(s)	299, 624, 1137, 1232
ClaI	ATCGAT	1 cut(s)	705
Csp6I	GTAC	4 cut(s)	586, 790, 895, 994
CviQI	GTAC	4 cut(s)	586, 790, 895, 994
DdeI	CTNAG	2 cut(s)	206, 528
DpnI	GATC	9 cut(s)	140, 177, 195, 201, 233, 429, 570, 673, 883
DpnII	GATC	9 cut(s)	138, 175, 193, 199, 231, 427, 568, 671, 881
Eam1104I	CTCTTC	1 cut(s)	516
EarI	CTCTTC	1 cut(s)	516
Eco130I	CCWWGG	1 cut(s)	432
Eco31I	GGTCTC	2 cut(s)	47, 1144
Eco47I	GGWCC	1 cut(s)	624
Eco57I	CTGAAG	1 cut(s)	585
EcoRI	GAATTC	2 cut(s)	313, 1170
EcoRII	CCWGG	2 cut(s)	1165, 1228
EcoT14I	CCWWGG	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	432
FalI	AAGNNNNNCTT	4 cut(s)	141, 173, 912, 944
FaqI	GGGAC	3 cut(s)	389, 939, 996
FbaI	TGATCA	2 cut(s)	175, 199
FblI	GTMKAC	1 cut(s)	308
Fnu4HI	GCNGC	4 cut(s)	188, 216, 416, 642
FokI	GGATG	5 cut(s)	130, 379, 667, 825, 1204
Fsp4HI	GCNGC	4 cut(s)	188, 216, 416, 642
FspBI	CTAG	1 cut(s)	1134
GluI	GCNGC	4 cut(s)	188, 216, 416, 642
HaeIII	GGCC	3 cut(s)	301, 1139, 1233
HapII	CCGG	6 cut(s)	287, 401, 419, 675, 987, 1235
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HinfI	GANTC	6 cut(s)	57, 290, 338, 482, 506, 560
HpaII	CCGG	6 cut(s)	287, 401, 419, 675, 987, 1235
HphI	GGTGA	2 cut(s)	491, 1031
Hpy166II	GTNNAC	3 cut(s)	16, 309, 624
Hpy188I	TCNGA	7 cut(s)	138, 180, 565, 757, 933, 1071, 1274
Hpy188III	TCNNGA	8 cut(s)	173, 197, 287, 294, 335, 355, 530, 577
Hpy8I	GTNNAC	3 cut(s)	16, 309, 624
HpyAV	CCTTC	2 cut(s)	337, 1189
HpyCH4III	ACNGT	2 cut(s)	937, 1211
HpyCH4IV	ACGT	1 cut(s)	1043
HpyF10VI	GCNNNNNNNGC	2 cut(s)	915, 1230
HpyF3I	CTNAG	2 cut(s)	206, 528
HpySE526I	ACGT	1 cut(s)	1043
Kpn2I	TCCGGA	1 cut(s)	286
Ksp22I	TGATCA	2 cut(s)	175, 199
Kzo9I	GATC	9 cut(s)	138, 175, 193, 199, 231, 427, 568, 671, 881
Lsp1109I	GCAGC	3 cut(s)	199, 227, 402
LweI	GCATC	2 cut(s)	687, 1078
MaeI	CTAG	1 cut(s)	1134
MaeII	ACGT	1 cut(s)	1043
MaeIII	GTNAC	4 cut(s)	260, 479, 797, 1205
MalI	GATC	9 cut(s)	140, 177, 195, 201, 233, 429, 570, 673, 883
MboI	GATC	9 cut(s)	138, 175, 193, 199, 231, 427, 568, 671, 881
MboII	GAAGA	6 cut(s)	100, 475, 503, 578, 673, 1107
MflI	RGATCY	1 cut(s)	671
MhlI	GDGCHC	1 cut(s)	1164
MluCI	AATT	7 cut(s)	160, 313, 385, 617, 1170, 1252, 1276
MlyI	GAGTC	2 cut(s)	51, 476
MroI	TCCGGA	1 cut(s)	286
MroXI	GAANNNNTTC	1 cut(s)	510
MseI	TTAA	5 cut(s)	159, 270, 891, 1074, 1279
MslI	CAYNNNNRTG	1 cut(s)	1145
MspI	CCGG	6 cut(s)	287, 401, 419, 675, 987, 1235
MspR9I	CCNGG	3 cut(s)	1167, 1230, 1235
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	2 cut(s)	1167, 1230
MwoI	GCNNNNNNNGC	2 cut(s)	915, 1230
NciI	CCSGG	1 cut(s)	1235
NdeII	GATC	9 cut(s)	138, 175, 193, 199, 231, 427, 568, 671, 881
NlaIV	GGNNCC	3 cut(s)	285, 673, 1163
NmuCI	GTSAC	3 cut(s)	260, 479, 1205
NspI	RCATGY	2 cut(s)	324, 1228
PaeI	GCATGC	1 cut(s)	1228
PagI	TCATGA	2 cut(s)	172, 196
PciI	ACATGT	1 cut(s)	320
PctI	GAATGC	1 cut(s)	10
PdmI	GAANNNNTTC	1 cut(s)	510
PfeI	GAWTC	4 cut(s)	290, 338, 506, 560
PkrI	GCNGC	4 cut(s)	189, 217, 417, 643
PleI	GAGTC	2 cut(s)	51, 476
PpsI	GAGTC	2 cut(s)	51, 476
PscI	ACATGT	1 cut(s)	320
Psp6I	CCWGG	2 cut(s)	1165, 1228
PspGI	CCWGG	2 cut(s)	1165, 1228
PspN4I	GGNNCC	3 cut(s)	285, 673, 1163
PspPI	GGNCC	4 cut(s)	299, 624, 1137, 1232
PstI	CTGCAG	1 cut(s)	189
PstNI	CAGNNNCTG	1 cut(s)	184
PsuI	RGATCY	1 cut(s)	671
RsaI	GTAC	4 cut(s)	587, 791, 896, 995
RsaNI	GTAC	4 cut(s)	586, 790, 895, 994
RseI	CAYNNNNRTG	1 cut(s)	1145
SaqAI	TTAA	5 cut(s)	159, 270, 891, 1074, 1279
SatI	GCNGC	4 cut(s)	188, 216, 416, 642
Sau3AI	GATC	9 cut(s)	138, 175, 193, 199, 231, 427, 568, 671, 881
Sau96I	GGNCC	4 cut(s)	299, 624, 1137, 1232
SchI	GAGTC	2 cut(s)	51, 476
ScrFI	CCNGG	3 cut(s)	1167, 1230, 1235
SduI	GDGCHC	1 cut(s)	1164
SfaNI	GCATC	2 cut(s)	687, 1078
SfcI	CTRYAG	1 cut(s)	185
SinI	GGWCC	1 cut(s)	624
SmiMI	CAYNNNNRTG	1 cut(s)	1145
SphI	GCATGC	1 cut(s)	1228
Sse9I	AATT	7 cut(s)	160, 313, 385, 617, 1170, 1252, 1276
SsiI	CCGC	1 cut(s)	642
SspI	AATATT	1 cut(s)	838
SspMI	CTAG	1 cut(s)	1134
StyD4I	CCNGG	3 cut(s)	1165, 1228, 1233
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	2 cut(s)	937, 1211
TaiI	ACGT	1 cut(s)	1046
TaqI	TCGA	6 cut(s)	293, 341, 684, 705, 775, 880
TasI	AATT	7 cut(s)	160, 313, 385, 617, 1170, 1252, 1276
TatI	WGTACW	2 cut(s)	789, 894
TauI	GCSGC	1 cut(s)	644
TfiI	GAWTC	4 cut(s)	290, 338, 506, 560
Tru1I	TTAA	5 cut(s)	159, 270, 891, 1074, 1279
Tru9I	TTAA	5 cut(s)	159, 270, 891, 1074, 1279
TscAI	CASTG	3 cut(s)	284, 673, 859
TseFI	GTSAC	3 cut(s)	260, 479, 1205
TseI	GCWGC	3 cut(s)	187, 215, 415
Tsp45I	GTSAC	3 cut(s)	260, 479, 1205
TspDTI	ATGAA	8 cut(s)	17, 65, 161, 629, 726, 1163, 1205, 1208
TspRI	CASTG	3 cut(s)	284, 673, 859
VpaK11BI	GGWCC	1 cut(s)	624
XapI	RAATTY	2 cut(s)	313, 1170
XceI	RCATGY	2 cut(s)	324, 1228
XcmI	CCANNNNNNNNNTGG	1 cut(s)	439
XmiI	GTMKAC	1 cut(s)	308
XmnI	GAANNNNTTC	1 cut(s)	510
XspI	CTAG	1 cut(s)	1134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.