Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011047

Physical Location & Seq

Genomic Coordinates Forward (+)

37477616 .. 37482311

Gene Structure 4696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g50320.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGAATGCTTCTGTCAACATCTATGGGAAAAGAGAGAGAGGTCTCAACATGAACAGACTCATGCCTTTCCTCCTCACTTCTTTAGCCGTGGCCTCCATTTTCAGCTTCTTCCTCGCTTATTCCCCAAACCCTATTCCGATCACATCCAAAGAAGCCCTTAATTCTGTTGTTCATGATCAGAACCTGCAGCCAGATCGTGATCATCTTAGCCATGCAGCACCAGTCAGGCTGATCCCACCTCCAAAAAAGAAAGAGGTGTGTGACTTGTTTAAGGGTCAGTGGGTTCCGGATTCGAGAGGGCCATTGTATACGAATTCAACATGTAAGACTATTCCTGAATCGAAGGATTGTTTCAAGAATGGGAGGATGGATAGGGACTATCTGAATTGGAGATGGAAGCCGGAGAAATGCGAGCTGCCGGAGTTTGATCCTAAGGCGTTTTTGGAAATCGTTAGAGGAAAGAAGATGGCATTTGTTGGTGACTCTGTTGCTCGCAATCACTTTGAGTCTCTTCTATGCCTCTTGTCTCAGGAGGAATTATGCACAGCGGTCAATTTGATCAGTTATATGAGTTGTGATTTGTGCTTGGAGGAACTCCCCAAAGACATTTACAAGGATTCTGAAGATCGTTTCAGGACATGGTACTTTCCTCAACATGACTTCACTCTAATGAAATTGTGGACCAAATATCTTATAGCCGCAGACGAGAGGATGGATAATGTCACTGGATCAGGCGTCTTCGATTTGAGCATAGACAAAATCGATGATGAATGGGGAAAGCACCTACCCGATTTAGACTACGTCATCATCTCGGACGGGCATTGGTTTTTTCGAGTATTATACCTGTATAAAGGGAACAAACTTATAGGATGTGTCTATTGCAACCAACCTAATATTACCGGCTTCAACACTGGCAACGCAGTTCGTATGGCGTTTCGATCTGCCTTTAAGTACATTAGCACTTGCAAGAACTGCAAAGTTGGTCTTCTGACCATTTTGAGGACATTTGCACCAGCACATTTTGAGAATGGGGCTTGGAACACCGGAGGGTACTGCAATAGGACAAGTCCCTTCAGTGAGGCAGAAGTTGATTTTACGAAGCTTGATTGGGAAATGAGGAACATTCAGATTAAGGAGATAAAAGGGGCAAGAAGAAACAATGGGAAGCAGATTAGGGTTTTGGATATAACTAGGGCCATGTTGATGAGACCAGACGGGCACCCTGGAATTCATTGGGGAAATCAATGGATGAAGGGTTATAGTGACTGTGTTCATTGGTGCATGCCAGGCCCGGTTGATTACTGGAACAATTTTTTGATTGCACTCATCAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

446

Amino Acids

51.41

Weight (kDa)

8.39

Isoelectric Point (pI)

33.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	86 - 138	6.7e-22	PMR5 N terminal Domain
PC-Esterase	PF13839	139 - 422	5.3e-91	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28150
fragaria_vesca	FvH4_6g50300 FvH4_6g50320 FvH4_6g50320 FvH4_6g50320
malus_domestica	MD09G1037400.v1.1 MD17G1038700.v1.1
prunus_persica	Prupe.3G280300_v2.0.a1
pyrus_communis	pycom111g03000 pycom17g03490
rosa_chinensis	RchiOBHm_Chr2g0170621
rosa_laevigata	RLG00000021969
rosa_multiflora	Rmu_sc0003787.1_g000032 Rmu_sc0010307.1_g000004
rosa_rugosa	Rorug02G0549800
rosa_samantha	Rh2AG622100 Rh2BG633400 Rh2CG602700 Rh2DG646200
rosa_wichuraiana	Rw2G051580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	192
AccB1I	GGYRCC	1 cut(s)	1218
AccI	GTMKAC	1 cut(s)	308
AccIII	TCCGGA	1 cut(s)	286
AciI	CCGC	2 cut(s)	548, 699
AclWI	GGATC	3 cut(s)	226, 422, 736
AcsI	RAATTY	2 cut(s)	313, 1227
AcuI	CTGAAG	2 cut(s)	642, 1057
AcyI	GRCGYC	1 cut(s)	735
AfaI	GTAC	3 cut(s)	644, 953, 1052
AfiI	CCNNNNNNNGG	1 cut(s)	999
AflIII	ACRYGT	1 cut(s)	320
AgsI	TTSAA	3 cut(s)	318, 355, 907
AjnI	CCWGG	2 cut(s)	1222, 1285
AluBI	AGCT	3 cut(s)	105, 415, 1102
AluI	AGCT	3 cut(s)	105, 415, 1102
Alw26I	GTCTC	4 cut(s)	47, 513, 531, 1201
AlwI	GGATC	3 cut(s)	226, 422, 736
AlwNI	CAGNNNCTG	1 cut(s)	184
Aor13HI	TCCGGA	1 cut(s)	286
AoxI	GGCC	4 cut(s)	90, 299, 1194, 1288
ApeKI	GCWGC	3 cut(s)	187, 215, 415
ApoI	RAATTY	2 cut(s)	313, 1227
AspS9I	GGNCC	4 cut(s)	299, 681, 1194, 1289
AsuC2I	CCSGG	1 cut(s)	1292
AsuHPI	GGTGA	1 cut(s)	491
AvaII	GGWCC	1 cut(s)	681
AxyI	CCTNAGG	1 cut(s)	432
BaeGI	GKGCMC	1 cut(s)	1221
BanI	GGYRCC	1 cut(s)	1218
BbsI	GAAGAC	2 cut(s)	730, 977
BbvI	GCAGC	3 cut(s)	199, 227, 402
BccI	CCATC	4 cut(s)	361, 387, 460, 706
BceAI	ACGGC	1 cut(s)	71
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BciT130I	CCWGG	2 cut(s)	1224, 1287
BclI	TGATCA	3 cut(s)	175, 199, 558
BcnI	CCSGG	1 cut(s)	1292
BcoDI	GTCTC	4 cut(s)	47, 513, 531, 1201
BfaI	CTAG	1 cut(s)	1191
BfmI	CTRYAG	1 cut(s)	185
BfuAI	ACCTGC	1 cut(s)	192
BisI	GCNGC	4 cut(s)	188, 216, 416, 699
BlsI	GCNGC	4 cut(s)	189, 217, 417, 700
Bme1390I	CCNGG	3 cut(s)	1224, 1287, 1292
Bme18I	GGWCC	1 cut(s)	681
BmgT120I	GGNCC	4 cut(s)	299, 681, 1194, 1289
BmiI	GGNNCC	2 cut(s)	285, 1220
BmrFI	CCNGG	3 cut(s)	1224, 1287, 1292
BpiI	GAAGAC	2 cut(s)	730, 977
BpuMI	CCSGG	1 cut(s)	1292
Bsa29I	ATCGAT	1 cut(s)	762
BsaBI	GATNNNNATC	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	735
BsaI	GGTCTC	2 cut(s)	47, 1201
BsaJI	CCNNGG	2 cut(s)	87, 1222
BsaWI	WCCGGW	2 cut(s)	286, 1043
Bsc4I	CCNNNNNNNGG	1 cut(s)	999
Bse118I	RCCGGY	1 cut(s)	899
Bse1I	ACTGG	4 cut(s)	221, 730, 916, 1307
Bse21I	CCTNAGG	1 cut(s)	432
Bse8I	GATNNNNATC	1 cut(s)	198
BseAI	TCCGGA	1 cut(s)	286
BseBI	CCWGG	2 cut(s)	1224, 1287
BseCI	ATCGAT	1 cut(s)	762
BseDI	CCNNGG	2 cut(s)	87, 1222
BseGI	GGATG	5 cut(s)	143, 372, 717, 875, 1254
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	999
BseMII	CTCAG	1 cut(s)	542
BseNI	ACTGG	4 cut(s)	221, 730, 916, 1307
BseRI	GAGGAG	1 cut(s)	62
BseSI	GKGCMC	1 cut(s)	1221
BseXI	GCAGC	3 cut(s)	199, 227, 402
BshFI	GGCC	4 cut(s)	92, 301, 1196, 1290
BshNI	GGYRCC	1 cut(s)	1218
BshVI	ATCGAT	1 cut(s)	762
BsiSI	CCGG	6 cut(s)	287, 401, 419, 900, 1044, 1292
BslFI	GGGAC	2 cut(s)	389, 1053
BslI	CCNNNNNNNGG	1 cut(s)	999
BsmAI	GTCTC	4 cut(s)	47, 513, 531, 1201
BsmFI	GGGAC	2 cut(s)	389, 1053
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	4 cut(s)	92, 301, 1196, 1290
Bso31I	GGTCTC	2 cut(s)	47, 1201
Bsp1286I	GDGCHC	1 cut(s)	1221
Bsp13I	TCCGGA	1 cut(s)	286
BspACI	CCGC	2 cut(s)	548, 699
BspANI	GGCC	4 cut(s)	92, 301, 1196, 1290
BspCNI	CTCAG	1 cut(s)	541
BspDI	ATCGAT	1 cut(s)	762
BspEI	TCCGGA	1 cut(s)	286
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	2 cut(s)	285, 1220
BspMAI	CTGCAG	1 cut(s)	189
BspMI	ACCTGC	1 cut(s)	192
BspPI	GGATC	3 cut(s)	226, 422, 736
BspT107I	GGYRCC	1 cut(s)	1218
BspTNI	GGTCTC	2 cut(s)	47, 1201
BsrFI	RCCGGY	1 cut(s)	899
BsrI	ACTGG	4 cut(s)	221, 730, 916, 1307
BssAI	RCCGGY	1 cut(s)	899
BssECI	CCNNGG	2 cut(s)	87, 1222
BssNAI	GTATAC	1 cut(s)	309
BssNI	GRCGYC	1 cut(s)	735
Bst1107I	GTATAC	1 cut(s)	309
Bst2UI	CCWGG	2 cut(s)	1224, 1287
Bst4CI	ACNGT	1 cut(s)	1268
Bst6I	CTCTTC	1 cut(s)	516
BstACI	GRCGYC	1 cut(s)	735
BstAPI	GCANNNNNTGC	1 cut(s)	972
BstC8I	GCNNGC	3 cut(s)	413, 493, 1283
BstDEI	CTNAG	3 cut(s)	206, 432, 528
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	5 cut(s)	143, 372, 717, 875, 1254
BstMAI	GTCTC	4 cut(s)	47, 513, 531, 1201
BstMWI	GCNNNNNNNGC	2 cut(s)	972, 1287
BstNI	CCWGG	2 cut(s)	1224, 1287
BstNSI	RCATGY	2 cut(s)	324, 1285
BstSCI	CCNGG	3 cut(s)	1222, 1285, 1290
BstSFI	CTRYAG	1 cut(s)	185
BstSLI	GKGCMC	1 cut(s)	1221
BstV1I	GCAGC	3 cut(s)	199, 227, 402
BstV2I	GAAGAC	2 cut(s)	730, 977
BstZ17I	GTATAC	1 cut(s)	309
Bsu15I	ATCGAT	1 cut(s)	762
Bsu36I	CCTNAGG	1 cut(s)	432
BsuRI	GGCC	4 cut(s)	92, 301, 1196, 1290
BsuTUI	ATCGAT	1 cut(s)	762
BtgI	CCRYGG	1 cut(s)	87
BtsCI	GGATG	5 cut(s)	143, 372, 717, 875, 1254
BtsIMutI	CAGTG	4 cut(s)	284, 723, 909, 1081
BveI	ACCTGC	1 cut(s)	192
Cac8I	GCNNGC	3 cut(s)	413, 493, 1283
CaiI	CAGNNNCTG	1 cut(s)	184
CciI	TCATGA	1 cut(s)	172
Cfr10I	RCCGGY	1 cut(s)	899
Cfr13I	GGNCC	4 cut(s)	299, 681, 1194, 1289
ClaI	ATCGAT	1 cut(s)	762
CseI	GACGC	1 cut(s)	724
Csp6I	GTAC	3 cut(s)	643, 952, 1051
CviAII	CATG	9 cut(s)	49, 61, 173, 212, 321, 639, 656, 1198, 1282
CviQI	GTAC	3 cut(s)	643, 952, 1051
DdeI	CTNAG	3 cut(s)	206, 432, 528
Eam1104I	CTCTTC	1 cut(s)	516
EarI	CTCTTC	1 cut(s)	516
Eco31I	GGTCTC	2 cut(s)	47, 1201
Eco47I	GGWCC	1 cut(s)	681
Eco57I	CTGAAG	2 cut(s)	642, 1057
Eco81I	CCTNAGG	1 cut(s)	432
EcoRI	GAATTC	2 cut(s)	313, 1227
EcoRII	CCWGG	2 cut(s)	1222, 1285
FaeI	CATG	9 cut(s)	52, 64, 176, 215, 324, 642, 659, 1201, 1285
FalI	AAGNNNNNCTT	4 cut(s)	141, 173, 969, 1001
FaqI	GGGAC	2 cut(s)	389, 1053
FatI	CATG	9 cut(s)	48, 60, 172, 211, 320, 638, 655, 1197, 1281
FbaI	TGATCA	3 cut(s)	175, 199, 558
FblI	GTMKAC	1 cut(s)	308
Fnu4HI	GCNGC	4 cut(s)	188, 216, 416, 699
FokI	GGATG	5 cut(s)	130, 379, 724, 882, 1261
Fsp4HI	GCNGC	4 cut(s)	188, 216, 416, 699
FspBI	CTAG	1 cut(s)	1191
GluI	GCNGC	4 cut(s)	188, 216, 416, 699
HaeIII	GGCC	4 cut(s)	92, 301, 1196, 1290
HapII	CCGG	6 cut(s)	287, 401, 419, 900, 1044, 1292
HgaI	GACGC	1 cut(s)	724
Hin1I	GRCGYC	1 cut(s)	735
Hin1II	CATG	9 cut(s)	52, 64, 176, 215, 324, 642, 659, 1201, 1285
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HindIII	AAGCTT	1 cut(s)	1100
HinfI	GANTC	6 cut(s)	57, 290, 338, 482, 506, 617
HpaII	CCGG	6 cut(s)	287, 401, 419, 900, 1044, 1292
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	3 cut(s)	16, 309, 681
Hpy188I	TCNGA	8 cut(s)	138, 180, 384, 622, 814, 990, 1128, 1331
Hpy188III	TCNNGA	8 cut(s)	173, 197, 287, 294, 335, 355, 530, 634
Hpy8I	GTNNAC	3 cut(s)	16, 309, 681
HpyAV	CCTTC	3 cut(s)	337, 1081, 1246
HpyCH4III	ACNGT	1 cut(s)	1268
HpyCH4IV	ACGT	1 cut(s)	801
HpyF10VI	GCNNNNNNNGC	2 cut(s)	972, 1287
HpyF3I	CTNAG	3 cut(s)	206, 432, 528
HpySE526I	ACGT	1 cut(s)	801
Hsp92I	GRCGYC	1 cut(s)	735
Hsp92II	CATG	9 cut(s)	52, 64, 176, 215, 324, 642, 659, 1201, 1285
Kpn2I	TCCGGA	1 cut(s)	286
Ksp22I	TGATCA	3 cut(s)	175, 199, 558
Lsp1109I	GCAGC	3 cut(s)	199, 227, 402
MaeI	CTAG	1 cut(s)	1191
MaeII	ACGT	1 cut(s)	801
MaeIII	GTNAC	4 cut(s)	260, 479, 721, 1262
MboII	GAAGA	7 cut(s)	100, 475, 503, 635, 730, 977, 1164
MhlI	GDGCHC	1 cut(s)	1221
MluCI	AATT	9 cut(s)	160, 313, 385, 536, 553, 674, 1227, 1309, 1333
MlyI	GAGTC	3 cut(s)	51, 476, 515
MroI	TCCGGA	1 cut(s)	286
MseI	TTAA	5 cut(s)	159, 270, 948, 1131, 1336
MslI	CAYNNNNRTG	2 cut(s)	668, 1202
MspA1I	CMGCKG	1 cut(s)	548
MspI	CCGG	6 cut(s)	287, 401, 419, 900, 1044, 1292
MspR9I	CCNGG	3 cut(s)	1224, 1287, 1292
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	2 cut(s)	1224, 1287
MwoI	GCNNNNNNNGC	2 cut(s)	972, 1287
NciI	CCSGG	1 cut(s)	1292
NlaIII	CATG	9 cut(s)	52, 64, 176, 215, 324, 642, 659, 1201, 1285
NlaIV	GGNNCC	2 cut(s)	285, 1220
NmuCI	GTSAC	4 cut(s)	260, 479, 721, 1262
NspI	RCATGY	2 cut(s)	324, 1285
PaeI	GCATGC	1 cut(s)	1285
PagI	TCATGA	1 cut(s)	172
PciI	ACATGT	1 cut(s)	320
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	3 cut(s)	290, 338, 617
PflFI	GACNNNGTC	1 cut(s)	800
PkrI	GCNGC	4 cut(s)	189, 217, 417, 700
PleI	GAGTC	3 cut(s)	51, 476, 514
PpsI	GAGTC	3 cut(s)	51, 476, 514
PscI	ACATGT	1 cut(s)	320
Psp6I	CCWGG	2 cut(s)	1222, 1285
PspGI	CCWGG	2 cut(s)	1222, 1285
PspN4I	GGNNCC	2 cut(s)	285, 1220
PspPI	GGNCC	4 cut(s)	299, 681, 1194, 1289
PstI	CTGCAG	1 cut(s)	189
PstNI	CAGNNNCTG	1 cut(s)	184
PsyI	GACNNNGTC	1 cut(s)	800
RsaI	GTAC	3 cut(s)	644, 953, 1052
RsaNI	GTAC	3 cut(s)	643, 952, 1051
RseI	CAYNNNNRTG	2 cut(s)	668, 1202
SaqAI	TTAA	5 cut(s)	159, 270, 948, 1131, 1336
SatI	GCNGC	4 cut(s)	188, 216, 416, 699
Sau96I	GGNCC	4 cut(s)	299, 681, 1194, 1289
SchI	GAGTC	3 cut(s)	51, 476, 515
ScrFI	CCNGG	3 cut(s)	1224, 1287, 1292
SduI	GDGCHC	1 cut(s)	1221
SfcI	CTRYAG	1 cut(s)	185
SinI	GGWCC	1 cut(s)	681
SmiMI	CAYNNNNRTG	2 cut(s)	668, 1202
SphI	GCATGC	1 cut(s)	1285
Sse9I	AATT	9 cut(s)	160, 313, 385, 536, 553, 674, 1227, 1309, 1333
SsiI	CCGC	2 cut(s)	548, 699
SspI	AATATT	1 cut(s)	895
SspMI	CTAG	1 cut(s)	1191
StyD4I	CCNGG	3 cut(s)	1222, 1285, 1290
TaaI	ACNGT	1 cut(s)	1268
TaiI	ACGT	1 cut(s)	804
TaqI	TCGA	6 cut(s)	293, 341, 741, 762, 832, 937
TasI	AATT	9 cut(s)	160, 313, 385, 536, 553, 674, 1227, 1309, 1333
TatI	WGTACW	1 cut(s)	951
TauI	GCSGC	1 cut(s)	701
TfiI	GAWTC	3 cut(s)	290, 338, 617
Tru1I	TTAA	5 cut(s)	159, 270, 948, 1131, 1336
Tru9I	TTAA	5 cut(s)	159, 270, 948, 1131, 1336
TscAI	CASTG	4 cut(s)	284, 730, 916, 1081
TseFI	GTSAC	4 cut(s)	260, 479, 721, 1262
TseI	GCWGC	3 cut(s)	187, 215, 415
Tsp45I	GTSAC	4 cut(s)	260, 479, 721, 1262
TspDTI	ATGAA	8 cut(s)	17, 65, 161, 686, 783, 1220, 1262, 1265
TspRI	CASTG	4 cut(s)	284, 730, 916, 1081
Tth111I	GACNNNGTC	1 cut(s)	800
VpaK11BI	GGWCC	1 cut(s)	681
XapI	RAATTY	2 cut(s)	313, 1227
XceI	RCATGY	2 cut(s)	324, 1285
XmiI	GTMKAC	1 cut(s)	308
XspI	CTAG	1 cut(s)	1191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.