AT3G28910
MYB Family

Myb domain protein 30

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013915
Physical Location & Seq
Forward (+)
10911132 .. 10913190
2059 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G28910.1

Sequence Viewer

Length: 972 bp
ATGGTGAGGCCTCCTTGTTGTGACAAAGGAGGAGTGAAGAAAGGGCCATGGACTCCTGAAGAAGATATCATTTTAGTCACTTACATCCAAGAACATGGTCCTGGTAATTGGAGAGCTGTTCCTACCAATACTGGGCTGCTTAGATGCAGCAAGAGTTGTAGACTTAGATGGACAAACTATTTAAGGCCAGGAATCAAAAGAGGCAATTTCACAGAACATGAAGAAAAGATGATTGTTCATCTCCAAGCCCTCTTAGGAAATAGATGGGCTGCAATTGCGTCATATCTTCCACAAAGGACAGACAATGACATTAAGAACTATTGGAACACTCATTTGAAGAAGAAACTCAACAAAGTCAATCAAGATTCTCATCAAGAACTTGACCGTTCCTCGCTCTCATCTTCACCATCGTCTTCTTCTGCTAATTCCAACTCAAACATCTCAAGAGGCCAATGGGAAAGGCGACTTCAAACCGATATCCACTTGGCGAAAAAGGCTCTCTCTGAGGCTTTATCTCCTGCCGTTGCACCAATCATTACATCTACAGTGACAACAACGTCTTCCTCTGCTGAATCAAGACGCTCTACTTCCTCAGCTAGCGGGTTTCTTAGGACGCAAGAAACATCTACAACTTATGCCTCAAGCACCGAAAATATCGCGAAATTGCTCAAAGGGTGGGTGAAAAACTCGCCGAAGACTCAAAACTCCGCGGATCAAATCGCTTCTACAGAGGTAAAAGAAGTGATCAAGAGTGATGATGGGAAGGAGTGTGCAGGGGCATTTCAGTCATTTTCTGAGTTTGATCACTCATATCAACAGGCTGGTGTTTCACCTGATCATGAGACCAAACCAGACATAACTGGATGCTGCAGTAACCAAAGTCAATGGTCTTTGTTTGAGAAGTGGTTGTTTGAGGATTCTGGTGGACAGATTGGTGATATTCTATTGGATGAAAACACTAATTTCTTCTGA

Protein Analysis

323

Amino Acids

35.92

Weight (kDa)

8.1

Isoelectric Point (pI)

54.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 3.4e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 7.7e-10 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 8.9e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 120 1.8e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0013915)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28910 AT3G28910
fragaria_vesca FvH4_6g48630
malus_domestica MD09G1051000.v1.1 MD17G1050900.v1.1
prunus_persica Prupe.3G268000_v2.0.a1 Prupe.3G268000_v2.0.a1
pyrus_communis pycom17g04580
rosa_chinensis RchiOBHm_Chr2g0168581
rosa_multiflora Rmu_sc0002416.1_g000020
rosa_roxburghii Rroxscaffold_2G00082930
rosa_rugosa Rorug02G0533900
rosa_samantha Rh2AG604200 Rh2BG617200 Rh2CG585500 Rh2DG627700
rosa_wichuraiana Rw2G050100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 556
AccI GTMKAC 1 cut(s) 160
AccII CGCG 2 cut(s) 659, 710
AciI CCGC 3 cut(s) 600, 708, 710
AclWI GGATC 1 cut(s) 720
AcuI CTGAAG 1 cut(s) 78
AfiI CCNNNNNNNGG 1 cut(s) 132
AgsI TTSAA 2 cut(s) 337, 470
AjnI CCWGG 2 cut(s) 100, 187
AluBI AGCT 2 cut(s) 116, 596
AluI AGCT 2 cut(s) 116, 596
Alw26I GTCTC 1 cut(s) 836
AlwI GGATC 1 cut(s) 720
AoxI GGCC 4 cut(s) 8, 44, 185, 448
ApeKI GCWGC 4 cut(s) 136, 147, 269, 867
AspS9I GGNCC 2 cut(s) 44, 98
AsuHPI GGTGA 5 cut(s) 16, 396, 691, 822, 947
AsuNHI GCTAGC 1 cut(s) 596
AvaII GGWCC 1 cut(s) 98
BbsI GAAGAC 3 cut(s) 405, 552, 701
BbvCI CCTCAGC 1 cut(s) 592
BbvI GCAGC 4 cut(s) 123, 159, 256, 854
BccI CCATC 4 cut(s) 162, 258, 415, 752
BceAI ACGGC 1 cut(s) 506
BciT130I CCWGG 2 cut(s) 102, 189
BclI TGATCA 3 cut(s) 744, 802, 835
BcoDI GTCTC 1 cut(s) 836
BfaI CTAG 1 cut(s) 597
BfmI CTRYAG 3 cut(s) 543, 726, 868
BisI GCNGC 4 cut(s) 137, 148, 270, 868
BlsI GCNGC 4 cut(s) 138, 149, 271, 869
Bme1390I CCNGG 2 cut(s) 102, 189
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 2 cut(s) 44, 98
BmrFI CCNGG 2 cut(s) 102, 189
BmrI ACTGGG 1 cut(s) 141
BmsI GCATC 2 cut(s) 134, 854
BmtI GCTAGC 1 cut(s) 600
BmuI ACTGGG 1 cut(s) 141
BpiI GAAGAC 3 cut(s) 405, 552, 701
Bpu10I CCTNAGC 1 cut(s) 592
BpuEI CTTGAG 2 cut(s) 427, 625
BsaBI GATNNNNATC 1 cut(s) 369
BsaI GGTCTC 1 cut(s) 836
BsaJI CCNNGG 2 cut(s) 47, 708
Bsc4I CCNNNNNNNGG 1 cut(s) 132
Bse1I ACTGG 2 cut(s) 136, 865
Bse8I GATNNNNATC 1 cut(s) 369
BseBI CCWGG 2 cut(s) 102, 189
BseDI CCNNGG 2 cut(s) 47, 708
BseGI GGATG 3 cut(s) 84, 869, 955
BseJI GATNNNNATC 1 cut(s) 369
BseLI CCNNNNNNNGG 1 cut(s) 132
BseMII CTCAG 3 cut(s) 495, 606, 786
BseNI ACTGG 2 cut(s) 136, 865
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 4 cut(s) 123, 159, 256, 854
BsgI GTGCAG 1 cut(s) 792
Bsh1236I CGCG 2 cut(s) 659, 710
BshFI GGCC 4 cut(s) 10, 46, 187, 450
BslI CCNNNNNNNGG 1 cut(s) 132
BsmAI GTCTC 1 cut(s) 836
BsnI GGCC 4 cut(s) 10, 46, 187, 450
Bso31I GGTCTC 1 cut(s) 836
Bsp143I GATC 4 cut(s) 712, 744, 802, 835
Bsp19I CCATGG 1 cut(s) 47
Bsp68I TCGCGA 1 cut(s) 659
BspACI CCGC 3 cut(s) 600, 708, 710
BspANI GGCC 4 cut(s) 10, 46, 187, 450
BspCNI CTCAG 3 cut(s) 496, 605, 787
BspFNI CGCG 2 cut(s) 659, 710
BspHI TCATGA 1 cut(s) 838
BspMAI CTGCAG 1 cut(s) 872
BspOI GCTAGC 1 cut(s) 600
BspPI GGATC 1 cut(s) 720
BspTNI GGTCTC 1 cut(s) 836
BsrI ACTGG 2 cut(s) 136, 865
BssECI CCNNGG 2 cut(s) 47, 708
BssMI GATC 4 cut(s) 712, 744, 802, 835
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 2 cut(s) 102, 189
Bst4CI ACNGT 2 cut(s) 386, 547
BstC8I GCNNGC 1 cut(s) 598
BstDEI CTNAG 7 cut(s) 140, 164, 253, 504, 592, 608, 795
BstDSI CCRYGG 2 cut(s) 47, 708
BstF5I GGATG 3 cut(s) 84, 869, 955
BstFNI CGCG 2 cut(s) 659, 710
BstKTI GATC 4 cut(s) 715, 747, 805, 838
BstMAI GTCTC 1 cut(s) 836
BstMBI GATC 4 cut(s) 712, 744, 802, 835
BstMWI GCNNNNNNNGC 2 cut(s) 275, 494
BstNI CCWGG 2 cut(s) 102, 189
BstSCI CCNGG 2 cut(s) 100, 187
BstSFI CTRYAG 3 cut(s) 543, 726, 868
BstUI CGCG 2 cut(s) 659, 710
BstV1I GCAGC 4 cut(s) 123, 159, 256, 854
BstV2I GAAGAC 3 cut(s) 405, 552, 701
BstXI CCANNNNNNTGG 1 cut(s) 95
BsuRI GGCC 4 cut(s) 10, 46, 187, 450
BtgI CCRYGG 2 cut(s) 47, 708
BtsCI GGATG 3 cut(s) 84, 869, 955
BtsIMutI CAGTG 1 cut(s) 552
BtuMI TCGCGA 1 cut(s) 659
Cac8I GCNNGC 1 cut(s) 598
CciI TCATGA 1 cut(s) 838
Cfr13I GGNCC 2 cut(s) 44, 98
Cfr42I CCGCGG 1 cut(s) 711
CseI GACGC 3 cut(s) 267, 588, 622
CviAII CATG 4 cut(s) 48, 95, 218, 839
DdeI CTNAG 7 cut(s) 140, 164, 253, 504, 592, 608, 795
DpnI GATC 4 cut(s) 714, 746, 804, 837
DpnII GATC 4 cut(s) 712, 744, 802, 835
DrdI GACNNNNNNGTC 1 cut(s) 556
DseDI GACNNNNNNGTC 1 cut(s) 556
Eco130I CCWWGG 1 cut(s) 47
Eco147I AGGCCT 1 cut(s) 10
Eco31I GGTCTC 1 cut(s) 836
Eco32I GATATC 2 cut(s) 67, 478
Eco47I GGWCC 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 78
EcoRII CCWGG 2 cut(s) 100, 187
EcoRV GATATC 2 cut(s) 67, 478
EcoT14I CCWWGG 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 4 cut(s) 51, 98, 221, 842
FaiI YATR 8 cut(s) 49, 96, 219, 283, 636, 811, 840, 857
FatI CATG 4 cut(s) 47, 94, 217, 838
FauI CCCGC 1 cut(s) 593
FbaI TGATCA 3 cut(s) 744, 802, 835
FblI GTMKAC 1 cut(s) 160
Fnu4HI GCNGC 4 cut(s) 137, 148, 270, 868
FokI GGATG 3 cut(s) 71, 876, 962
Fsp4HI GCNGC 4 cut(s) 137, 148, 270, 868
FspBI CTAG 1 cut(s) 597
GluI GCNGC 4 cut(s) 137, 148, 270, 868
HaeIII GGCC 4 cut(s) 10, 46, 187, 450
HgaI GACGC 3 cut(s) 267, 588, 622
Hin1II CATG 4 cut(s) 51, 98, 221, 842
HinfI GANTC 6 cut(s) 52, 192, 365, 572, 697, 917
HphI GGTGA 5 cut(s) 16, 396, 691, 822, 947
Hpy166II GTNNAC 2 cut(s) 161, 926
Hpy188I TCNGA 3 cut(s) 505, 796, 971
Hpy188III TCNNGA 8 cut(s) 56, 362, 374, 444, 576, 658, 748, 839
Hpy8I GTNNAC 2 cut(s) 161, 926
HpyAV CCTTC 1 cut(s) 757
HpyCH4III ACNGT 2 cut(s) 386, 547
HpyCH4IV ACGT 1 cut(s) 557
HpyCH4V TGCA 5 cut(s) 147, 272, 527, 773, 870
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 494
HpyF3I CTNAG 7 cut(s) 140, 164, 253, 504, 592, 608, 795
HpySE526I ACGT 1 cut(s) 557
Hsp92II CATG 4 cut(s) 51, 98, 221, 842
Ksp22I TGATCA 3 cut(s) 744, 802, 835
KspI CCGCGG 1 cut(s) 711
Kzo9I GATC 4 cut(s) 712, 744, 802, 835
Lsp1109I GCAGC 4 cut(s) 123, 159, 256, 854
LweI GCATC 2 cut(s) 134, 854
MaeI CTAG 1 cut(s) 597
MaeII ACGT 1 cut(s) 557
MaeIII GTNAC 4 cut(s) 20, 76, 547, 872
MalI GATC 4 cut(s) 714, 746, 804, 837
MboI GATC 4 cut(s) 712, 744, 802, 835
MfeI CAATTG 1 cut(s) 273
MluCI AATT 6 cut(s) 106, 205, 273, 424, 662, 961
MlyI GAGTC 2 cut(s) 46, 691
MmeI TCCRAC 1 cut(s) 453
MseI TTAA 2 cut(s) 182, 312
MspA1I CMGCKG 1 cut(s) 710
MspR9I CCNGG 2 cut(s) 102, 189
MunI CAATTG 1 cut(s) 273
MvaI CCWGG 2 cut(s) 102, 189
MvnI CGCG 2 cut(s) 659, 710
MwoI GCNNNNNNNGC 2 cut(s) 275, 494
NcoI CCATGG 1 cut(s) 47
NdeII GATC 4 cut(s) 712, 744, 802, 835
NheI GCTAGC 1 cut(s) 596
NlaIII CATG 4 cut(s) 51, 98, 221, 842
NmuCI GTSAC 3 cut(s) 20, 76, 547
NruI TCGCGA 1 cut(s) 659
PagI TCATGA 1 cut(s) 838
PceI AGGCCT 1 cut(s) 10
PfeI GAWTC 4 cut(s) 192, 365, 572, 917
PkrI GCNGC 4 cut(s) 138, 149, 271, 869
PleI GAGTC 2 cut(s) 46, 691
PpsI GAGTC 2 cut(s) 46, 691
Psp6I CCWGG 2 cut(s) 100, 187
PspGI CCWGG 2 cut(s) 100, 187
PspPI GGNCC 2 cut(s) 44, 98
PstI CTGCAG 1 cut(s) 872
RruI TCGCGA 1 cut(s) 659
SacII CCGCGG 1 cut(s) 711
SaqAI TTAA 2 cut(s) 182, 312
SatI GCNGC 4 cut(s) 137, 148, 270, 868
Sau3AI GATC 4 cut(s) 712, 744, 802, 835
Sau96I GGNCC 2 cut(s) 44, 98
SchI GAGTC 2 cut(s) 46, 691
ScrFI CCNGG 2 cut(s) 102, 189
SetI ASST 5 cut(s) 118, 560, 598, 735, 835
SfaNI GCATC 2 cut(s) 134, 854
SfcI CTRYAG 3 cut(s) 543, 726, 868
Sfr303I CCGCGG 1 cut(s) 711
SgrBI CCGCGG 1 cut(s) 711
SinI GGWCC 1 cut(s) 98
SmlI CTYRAG 2 cut(s) 442, 640
SmoI CTYRAG 2 cut(s) 442, 640
Sse9I AATT 6 cut(s) 106, 205, 273, 424, 662, 961
SseBI AGGCCT 1 cut(s) 10
SsiI CCGC 3 cut(s) 600, 708, 710
SspMI CTAG 1 cut(s) 597
StuI AGGCCT 1 cut(s) 10
StyD4I CCNGG 2 cut(s) 100, 187
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 2 cut(s) 386, 547
TaiI ACGT 1 cut(s) 560
TasI AATT 6 cut(s) 106, 205, 273, 424, 662, 961
TfiI GAWTC 4 cut(s) 192, 365, 572, 917
Tru1I TTAA 2 cut(s) 182, 312
Tru9I TTAA 2 cut(s) 182, 312
TscAI CASTG 1 cut(s) 552
TseFI GTSAC 3 cut(s) 20, 76, 547
TseI GCWGC 4 cut(s) 136, 147, 269, 867
Tsp45I GTSAC 3 cut(s) 20, 76, 547
TspDTI ATGAA 3 cut(s) 227, 234, 966
TspRI CASTG 1 cut(s) 552
VpaK11BI GGWCC 1 cut(s) 98
XmiI GTMKAC 1 cut(s) 160
XspI CTAG 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.