MD09G1051000.v1.1
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0013915
Physical Location & Seq
Forward (+)
3374969 .. 3377073
2105 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1051000.v1.1.491

Sequence Viewer

Length: 1029 bp
ATGGGGAGGCCTCCTTGCTGTGACAAAGAAGGGGTCAAGAAAGGACCTTGGACTCCTGAAGAAGACATCATTTTAGTCTCTTACATTCAAGAACGTGGACCTGGAAATTGGAGAGCCGTTCCTACCAATACTGGGCTGCATAGATGCAGTAAAAGTTGCAGGCTTAGATGGACTAATTACCTCAGGCCAGGGATCAAACGCGGTAACTTTACTGACCAAGAGGAGAAGATGATCATCCACCTTCAAGCTCTATTGGGCAATAGATGGGCTGCAATAGCTTCATACCTCCCACAGAGAACTGACAATGACATTAAAAACTATTGGAACACACACTTGAGGAAGAAGCTGAGCAAGCTCCAAGCTGCAGGAGGAGGCACTGAAGGCCTTCACTCAAAAGATCAAGGACTAAACAGCAATTCTTCCTCACAGCCAATATCCAGAGGACAATGGGAGAGGAGGCTTCAAACAGACATCCACATGGCCAGGCAAGCTCTCAGAGATGCCCTTTCCCCAGAAAAGCCACTGACTTTGAGTTCAGATTTGAATCCCACAGATGGGTTTTCGATTTCGAGCCCGAAGAAACCATCCCTAGATCAATCAAGCAGTTCCACTTATGCTTCAAGCACTGAGAACATTTCAAGATTGTTGAAGGGTTGGATGAAAAACCCACCAAAGAAATCAGCTAGCTTCACCAACTTGGCTAATAATAAAACAGATTATCAGCATTACTCATCTAGTGAGGGAACCACATCTGTGGCAAATACTGCCAATAGTGGCAATGTTGAACTATCTGATACATTTGAGTCTCTGTTCGGTTTTGAGTCCTCAAATTCCTATTTGTCTCCGTCTATGTCACCGGAGGCCAGCTTATTCCAAGGCGAAAGCAAGCCGGATCTTATCAGCGATAAGTTGCCGCTGTCTTTTCTTGAGAAGTGGCTGTTTGATGAAAGTGCTTCTCCTGCTGCTCTAGGGAAGGACCACTTCTTTAGTGATATGCTACCAGATCATGGAAATGCTAACTTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

343

Amino Acids

38.01

Weight (kDa)

8.53

Isoelectric Point (pI)

52.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 9.5e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 77 2e-10 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 1.8e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 118 1.1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013915)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28910 AT3G28910
fragaria_vesca FvH4_6g48630
malus_domestica MD09G1051000.v1.1 MD17G1050900.v1.1
prunus_persica Prupe.3G268000_v2.0.a1 Prupe.3G268000_v2.0.a1
pyrus_communis pycom17g04580
rosa_chinensis RchiOBHm_Chr2g0168581
rosa_multiflora Rmu_sc0002416.1_g000020
rosa_roxburghii Rroxscaffold_2G00082930
rosa_rugosa Rorug02G0533900
rosa_samantha Rh2AG604200 Rh2BG617200 Rh2CG585500 Rh2DG627700
rosa_wichuraiana Rw2G050100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1007
AccII CGCG 1 cut(s) 201
AciI CCGC 2 cut(s) 201, 914
AclWI GGATC 2 cut(s) 200, 900
AcoI YGGCCR 1 cut(s) 480
AcsI RAATTY 1 cut(s) 829
AcuI CTGAAG 2 cut(s) 78, 399
AfiI CCNNNNNNNGG 4 cut(s) 132, 554, 555, 1007
AgsI TTSAA 8 cut(s) 89, 245, 464, 544, 621, 639, 649, 785
AjnI CCWGG 3 cut(s) 100, 187, 482
AleI CACNNNNGTG 1 cut(s) 752
AluBI AGCT 9 cut(s) 248, 278, 346, 355, 362, 491, 683, 687, 867
AluI AGCT 9 cut(s) 248, 278, 346, 355, 362, 491, 683, 687, 867
Alw26I GTCTC 3 cut(s) 82, 810, 846
AlwI GGATC 2 cut(s) 200, 900
AoxI GGCC 5 cut(s) 8, 185, 382, 480, 861
ApeKI GCWGC 4 cut(s) 136, 269, 362, 962
ApoI RAATTY 1 cut(s) 829
ArsI GACNNNNNNTTYG 2 cut(s) 18, 50
Asp700I GAANNNNTTC 1 cut(s) 384
AspS9I GGNCC 3 cut(s) 44, 98, 976
AsuHPI GGTGA 2 cut(s) 682, 846
AsuNHI GCTAGC 1 cut(s) 683
AvaII GGWCC 3 cut(s) 44, 98, 976
AxyI CCTNAGG 1 cut(s) 182
BalI TGGCCA 1 cut(s) 482
BanII GRGCYC 1 cut(s) 575
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 4 cut(s) 123, 256, 349, 949
BccI CCATC 4 cut(s) 162, 258, 548, 592
BceAI ACGGC 1 cut(s) 101
BciT130I CCWGG 3 cut(s) 102, 189, 484
BclI TGATCA 1 cut(s) 231
BcoDI GTCTC 3 cut(s) 82, 810, 846
BfaI CTAG 4 cut(s) 590, 684, 735, 968
BfmI CTRYAG 1 cut(s) 363
BisI GCNGC 5 cut(s) 137, 270, 363, 914, 963
BlpI GCTNAGC 1 cut(s) 347
BlsI GCNGC 5 cut(s) 138, 271, 364, 915, 964
Bme1390I CCNGG 3 cut(s) 102, 189, 484
Bme18I GGWCC 3 cut(s) 44, 98, 976
BmgT120I GGNCC 3 cut(s) 44, 98, 976
BmiI GGNNCC 1 cut(s) 745
BmrFI CCNGG 3 cut(s) 102, 189, 484
BmrI ACTGGG 1 cut(s) 141
BmsI GCATC 2 cut(s) 134, 490
BmtI GCTAGC 1 cut(s) 687
BmuI ACTGGG 1 cut(s) 141
BpiI GAAGAC 1 cut(s) 69
Bpu1102I GCTNAGC 1 cut(s) 347
BpuEI CTTGAG 2 cut(s) 355, 947
BsaBI GATNNNNATC 2 cut(s) 233, 543
BsaJI CCNNGG 3 cut(s) 47, 188, 874
BsaWI WCCGGW 1 cut(s) 856
Bsc4I CCNNNNNNNGG 4 cut(s) 132, 554, 555, 1007
Bse1I ACTGG 1 cut(s) 136
Bse21I CCTNAGG 1 cut(s) 182
Bse3DI GCAATG 1 cut(s) 784
Bse8I GATNNNNATC 2 cut(s) 233, 543
BseBI CCWGG 3 cut(s) 102, 189, 484
BseDI CCNNGG 3 cut(s) 47, 188, 874
BseGI GGATG 4 cut(s) 234, 471, 584, 663
BseJI GATNNNNATC 2 cut(s) 233, 543
BseLI CCNNNNNNNGG 4 cut(s) 132, 554, 555, 1007
BseMI GCAATG 1 cut(s) 784
BseMII CTCAG 4 cut(s) 196, 338, 508, 618
BseNI ACTGG 1 cut(s) 136
BseRI GAGGAG 3 cut(s) 236, 384, 469
BseXI GCAGC 4 cut(s) 123, 256, 349, 949
Bsh1236I CGCG 1 cut(s) 201
BshFI GGCC 5 cut(s) 10, 187, 384, 482, 863
BsiSI CCGG 2 cut(s) 857, 890
BslI CCNNNNNNNGG 4 cut(s) 132, 554, 555, 1007
BsmAI GTCTC 3 cut(s) 82, 810, 846
BsnI GGCC 5 cut(s) 10, 187, 384, 482, 863
Bsp1286I GDGCHC 1 cut(s) 575
Bsp143I GATC 6 cut(s) 192, 231, 397, 592, 892, 1003
Bsp1720I GCTNAGC 1 cut(s) 347
BspACI CCGC 2 cut(s) 201, 914
BspANI GGCC 5 cut(s) 10, 187, 384, 482, 863
BspCNI CTCAG 4 cut(s) 195, 339, 507, 619
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 745
BspMAI CTGCAG 1 cut(s) 367
BspOI GCTAGC 1 cut(s) 687
BspPI GGATC 2 cut(s) 200, 900
BsrDI GCAATG 1 cut(s) 784
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 3 cut(s) 47, 188, 874
BssMI GATC 6 cut(s) 192, 231, 397, 592, 892, 1003
BssT1I CCWWGG 2 cut(s) 47, 874
Bst2UI CCWGG 3 cut(s) 102, 189, 484
BstAPI GCANNNNNTGC 1 cut(s) 764
BstC8I GCNNGC 6 cut(s) 161, 353, 489, 685, 865, 887
BstDEI CTNAG 5 cut(s) 164, 182, 347, 494, 627
BstF5I GGATG 4 cut(s) 234, 471, 584, 663
BstFNI CGCG 1 cut(s) 201
BstKTI GATC 6 cut(s) 195, 234, 400, 595, 895, 1006
BstMAI GTCTC 3 cut(s) 82, 810, 846
BstMBI GATC 6 cut(s) 192, 231, 397, 592, 892, 1003
BstMWI GCNNNNNNNGC 6 cut(s) 275, 352, 381, 488, 764, 959
BstNI CCWGG 3 cut(s) 102, 189, 484
BstSCI CCNGG 3 cut(s) 100, 187, 482
BstSFI CTRYAG 1 cut(s) 363
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 4 cut(s) 123, 256, 349, 949
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 892
BstXI CCANNNNNNTGG 1 cut(s) 754
BstYI RGATCY 1 cut(s) 892
Bsu36I CCTNAGG 1 cut(s) 182
BsuRI GGCC 5 cut(s) 10, 187, 384, 482, 863
BtsCI GGATG 4 cut(s) 234, 471, 584, 663
BtsIMutI CAGTG 3 cut(s) 375, 521, 624
Cac8I GCNNGC 6 cut(s) 161, 353, 489, 685, 865, 887
Cfr13I GGNCC 3 cut(s) 44, 98, 976
CspCI CAANNNNNGTGG 2 cut(s) 510, 545
CviAII CATG 2 cut(s) 478, 1007
DdeI CTNAG 5 cut(s) 164, 182, 347, 494, 627
DpnI GATC 6 cut(s) 194, 233, 399, 594, 894, 1005
DpnII GATC 6 cut(s) 192, 231, 397, 592, 892, 1003
EaeI YGGCCR 1 cut(s) 480
Eco130I CCWWGG 2 cut(s) 47, 874
Eco147I AGGCCT 2 cut(s) 10, 384
Eco24I GRGCYC 1 cut(s) 575
Eco47I GGWCC 3 cut(s) 44, 98, 976
Eco57I CTGAAG 2 cut(s) 78, 399
Eco81I CCTNAGG 1 cut(s) 182
EcoO109I RGGNCCY 1 cut(s) 44
EcoRII CCWGG 3 cut(s) 100, 187, 482
EcoT14I CCWWGG 2 cut(s) 47, 874
EcoT38I GRGCYC 1 cut(s) 575
ErhI CCWWGG 2 cut(s) 47, 874
FaeI CATG 2 cut(s) 481, 1010
FaiI YATR 7 cut(s) 141, 283, 479, 615, 851, 995, 1008
FalI AAGNNNNNCTT 2 cut(s) 965, 997
FatI CATG 2 cut(s) 477, 1006
FbaI TGATCA 1 cut(s) 231
Fnu4HI GCNGC 5 cut(s) 137, 270, 363, 914, 963
FokI GGATG 4 cut(s) 221, 458, 571, 670
FriOI GRGCYC 1 cut(s) 575
Fsp4HI GCNGC 5 cut(s) 137, 270, 363, 914, 963
FspBI CTAG 4 cut(s) 590, 684, 735, 968
GluI GCNGC 5 cut(s) 137, 270, 363, 914, 963
HaeIII GGCC 5 cut(s) 10, 187, 384, 482, 863
HapII CCGG 2 cut(s) 857, 890
Hin1II CATG 2 cut(s) 481, 1010
HinfI GANTC 4 cut(s) 52, 544, 803, 821
HpaII CCGG 2 cut(s) 857, 890
HphI GGTGA 2 cut(s) 682, 846
Hpy166II GTNNAC 1 cut(s) 98
Hpy188I TCNGA 4 cut(s) 497, 538, 793, 1028
Hpy188III TCNNGA 6 cut(s) 37, 56, 89, 438, 639, 926
Hpy8I GTNNAC 1 cut(s) 98
HpyAV CCTTC 6 cut(s) 23, 251, 374, 395, 643, 967
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 5 cut(s) 139, 147, 159, 272, 365
HpyF10VI GCNNNNNNNGC 6 cut(s) 275, 352, 381, 488, 764, 959
HpyF3I CTNAG 5 cut(s) 164, 182, 347, 494, 627
HpySE526I ACGT 1 cut(s) 94
Hsp92II CATG 2 cut(s) 481, 1010
Ksp22I TGATCA 1 cut(s) 231
Kzo9I GATC 6 cut(s) 192, 231, 397, 592, 892, 1003
LmnI GCTCC 1 cut(s) 360
Lsp1109I GCAGC 4 cut(s) 123, 256, 349, 949
LweI GCATC 2 cut(s) 134, 490
MaeI CTAG 4 cut(s) 590, 684, 735, 968
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 3 cut(s) 20, 203, 852
MalI GATC 6 cut(s) 194, 233, 399, 594, 894, 1005
MboI GATC 6 cut(s) 192, 231, 397, 592, 892, 1003
MboII GAAGA 6 cut(s) 71, 74, 238, 352, 411, 589
MflI RGATCY 1 cut(s) 892
MhlI GDGCHC 1 cut(s) 575
MlsI TGGCCA 1 cut(s) 482
MluCI AATT 4 cut(s) 106, 175, 415, 829
MluNI TGGCCA 1 cut(s) 482
MlyI GAGTC 3 cut(s) 46, 812, 830
MmeI TCCRAC 1 cut(s) 635
Mox20I TGGCCA 1 cut(s) 482
MroXI GAANNNNTTC 1 cut(s) 384
MscI TGGCCA 1 cut(s) 482
MseI TTAA 1 cut(s) 312
MslI CAYNNNNRTG 3 cut(s) 476, 752, 1011
Msp20I TGGCCA 1 cut(s) 482
MspA1I CMGCKG 1 cut(s) 916
MspI CCGG 2 cut(s) 857, 890
MspR9I CCNGG 3 cut(s) 102, 189, 484
MvaI CCWGG 3 cut(s) 102, 189, 484
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 6 cut(s) 275, 352, 381, 488, 764, 959
NdeII GATC 6 cut(s) 192, 231, 397, 592, 892, 1003
NheI GCTAGC 1 cut(s) 683
NlaIII CATG 2 cut(s) 481, 1010
NlaIV GGNNCC 1 cut(s) 745
NmuCI GTSAC 2 cut(s) 20, 852
OliI CACNNNNGTG 1 cut(s) 752
PceI AGGCCT 2 cut(s) 10, 384
PdmI GAANNNNTTC 1 cut(s) 384
PfeI GAWTC 1 cut(s) 544
PflMI CCANNNNNTGG 1 cut(s) 1007
PkrI GCNGC 5 cut(s) 138, 271, 364, 915, 964
PleI GAGTC 3 cut(s) 46, 811, 829
PpsI GAGTC 3 cut(s) 46, 811, 829
PpuMI RGGWCCY 1 cut(s) 44
Psp5II RGGWCCY 1 cut(s) 44
Psp6I CCWGG 3 cut(s) 100, 187, 482
PspGI CCWGG 3 cut(s) 100, 187, 482
PspN4I GGNNCC 1 cut(s) 745
PspPI GGNCC 3 cut(s) 44, 98, 976
PspPPI RGGWCCY 1 cut(s) 44
PstI CTGCAG 1 cut(s) 367
PsuI RGATCY 1 cut(s) 892
RseI CAYNNNNRTG 3 cut(s) 476, 752, 1011
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 5 cut(s) 137, 270, 363, 914, 963
Sau3AI GATC 6 cut(s) 192, 231, 397, 592, 892, 1003
Sau96I GGNCC 3 cut(s) 44, 98, 976
SchI GAGTC 3 cut(s) 46, 812, 830
ScrFI CCNGG 3 cut(s) 102, 189, 484
SduI GDGCHC 1 cut(s) 575
SfaNI GCATC 2 cut(s) 134, 490
SfcI CTRYAG 1 cut(s) 363
SinI GGWCC 3 cut(s) 44, 98, 976
SmiMI CAYNNNNRTG 3 cut(s) 476, 752, 1011
SmlI CTYRAG 2 cut(s) 334, 926
SmoI CTYRAG 2 cut(s) 334, 926
Sse9I AATT 4 cut(s) 106, 175, 415, 829
SseBI AGGCCT 2 cut(s) 10, 384
SsiI CCGC 2 cut(s) 201, 914
SspMI CTAG 4 cut(s) 590, 684, 735, 968
StuI AGGCCT 2 cut(s) 10, 384
StyD4I CCNGG 3 cut(s) 100, 187, 482
StyI CCWWGG 2 cut(s) 47, 874
TaiI ACGT 1 cut(s) 97
TaqI TCGA 2 cut(s) 563, 569
TasI AATT 4 cut(s) 106, 175, 415, 829
TauI GCSGC 1 cut(s) 916
TfiI GAWTC 1 cut(s) 544
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 3 cut(s) 382, 528, 631
TseFI GTSAC 2 cut(s) 20, 852
TseI GCWGC 4 cut(s) 136, 269, 362, 962
Tsp45I GTSAC 2 cut(s) 20, 852
TspDTI ATGAA 3 cut(s) 270, 674, 960
TspGWI ACGGA 1 cut(s) 834
TspRI CASTG 3 cut(s) 382, 528, 631
Van91I CCANNNNNTGG 1 cut(s) 1007
VpaK11BI GGWCC 3 cut(s) 44, 98, 976
XapI RAATTY 1 cut(s) 829
XmnI GAANNNNTTC 1 cut(s) 384
XspI CTAG 4 cut(s) 590, 684, 735, 968
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.