Prupe.3G268000_v2.0.a1
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0013915
Physical Location & Seq
Reverse (-)
25033957 .. 25036251
2295 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G268000.1

Sequence Viewer

Length: 1008 bp
ATGGGCAGGCCTCCTTGCTGTGATAAAGAAGGGGTCAAGAAAGGACCTTGGACTCCTGAAGAAGATATCACTTTGGTCTCTTACATTCAAGAACATGGTCCTGGGAATTGGAGGGCTGTTCCTACCAATACAGGGCTGCATAGATGCAGTAAAAGTTGCAGGCTGAGATGGACTAATTACCTTAGGCCTGGGATCAAACGTGGCAACTTTACTGACCATGAGGAGAAGATGATCATCCACCTTCAAGCTCTTTTGGGCAATAGATGGGCTGCAATAGCTTCATACCTCCCACAGAGAACTGACAATGACATTAAAAACTACTGGAACACCCACTTGAAGAAGAAGCTAAACAAGCTTCAAGCAGGCACTGAAGGCCACTCTAAAGATCAAGGATCAAGCACCAGCTCGCAGGCAATATCCAGAGGTCAATGGGAGAGAAGGCTTCAAACTGACATTCACATGGCCAGACAAGCTCTTCGTGATGCCCTGTCCCCTGAAAAGCCAAGCACTTTGAGCTCTGACTTGAAACCAGCTGATGGGTTCCTTATCTCCACCACAAAACCAGCCCAAGATCAATCAACAACCACTTATGCTTCAAGCACTGAGAACATTTCAAGACTGCTCAAAGATTGGATGAAAAACCCCCCAAAATCATCATCAGCCAGAACCAACTTGGCTAAGACTCAGCATTCATTTACCAACATGGTTTCAGGGTTTGACTGTACATCCAGTGAGGGGGCCACATCTGCAGCAAACACAACCAGTGGCGTTGAATTATCTGATGCATTTGAATCTCGGTTTGGTTTTGAGTCCCTTGACTCTTCAAATTCGGATTTATCTCCATCTATGTCACCAGAGGCTAGCCTGTTCCAAGATGAAAGCAAGCCGAACCTTATTAGTGACCAGTTTCTGTCATTGATTGATAAGTGGATATTTGATGAAGATGCTGCTGCTATTCAAGGGAAAGATATGATGACACTAGATCATGAAAATGCTTACTTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

336

Amino Acids

37.36

Weight (kDa)

6.51

Isoelectric Point (pI)

47.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013915)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28910 AT3G28910
fragaria_vesca FvH4_6g48630
malus_domestica MD09G1051000.v1.1 MD17G1050900.v1.1
prunus_persica Prupe.3G268000_v2.0.a1 Prupe.3G268000_v2.0.a1
pyrus_communis pycom17g04580
rosa_chinensis RchiOBHm_Chr2g0168581
rosa_multiflora Rmu_sc0002416.1_g000020
rosa_roxburghii Rroxscaffold_2G00082930
rosa_rugosa Rorug02G0533900
rosa_samantha Rh2AG604200 Rh2BG617200 Rh2CG585500 Rh2DG627700
rosa_wichuraiana Rw2G050100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 536
AclWI GGATC 2 cut(s) 200, 400
AcoI YGGCCR 1 cut(s) 462
AcsI RAATTY 1 cut(s) 826
AcuI CTGAAG 2 cut(s) 78, 390
AfaI GTAC 1 cut(s) 724
AfiI CCNNNNNNNGG 3 cut(s) 132, 536, 735
AjnI CCWGG 2 cut(s) 100, 187
AjuI GAANNNNNNNTTGG 2 cut(s) 783, 815
AluBI AGCT 8 cut(s) 248, 278, 346, 355, 405, 473, 516, 533
AluI AGCT 8 cut(s) 248, 278, 346, 355, 405, 473, 516, 533
Alw21I GWGCWC 1 cut(s) 518
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 2 cut(s) 200, 400
AlwNI CAGNNNCTG 2 cut(s) 368, 910
AoxI GGCC 5 cut(s) 8, 185, 373, 462, 738
ApeKI GCWGC 5 cut(s) 136, 269, 749, 947, 950
ApoI RAATTY 1 cut(s) 826
ArsI GACNNNNNNTTYG 2 cut(s) 459, 491
AspS9I GGNCC 3 cut(s) 44, 98, 738
AsuHPI GGTGA 1 cut(s) 843
AsuNHI GCTAGC 1 cut(s) 860
AvaII GGWCC 2 cut(s) 44, 98
AxyI CCTNAGG 1 cut(s) 182
BalI TGGCCA 1 cut(s) 464
BanII GRGCYC 1 cut(s) 518
Bbv12I GWGCWC 1 cut(s) 518
BbvI GCAGC 5 cut(s) 123, 256, 761, 934, 937
BccI CCATC 4 cut(s) 162, 258, 530, 850
BciT130I CCWGG 2 cut(s) 102, 189
BclI TGATCA 1 cut(s) 231
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 2 cut(s) 861, 980
BfmI CTRYAG 1 cut(s) 747
BisI GCNGC 5 cut(s) 137, 270, 750, 948, 951
BlsI GCNGC 5 cut(s) 138, 271, 751, 949, 952
Bme1390I CCNGG 2 cut(s) 102, 189
Bme18I GGWCC 2 cut(s) 44, 98
BmgT120I GGNCC 3 cut(s) 44, 98, 738
BmiI GGNNCC 2 cut(s) 542, 739
BmrFI CCNGG 2 cut(s) 102, 189
BmsI GCATC 4 cut(s) 134, 472, 772, 934
BmtI GCTAGC 1 cut(s) 864
BsaBI GATNNNNATC 1 cut(s) 233
BsaI GGTCTC 1 cut(s) 82
BsaJI CCNNGG 3 cut(s) 47, 101, 188
Bsc4I CCNNNNNNNGG 3 cut(s) 132, 536, 735
Bse1I ACTGG 4 cut(s) 326, 729, 762, 904
Bse21I CCTNAGG 1 cut(s) 182
Bse8I GATNNNNATC 1 cut(s) 233
BseBI CCWGG 2 cut(s) 102, 189
BseDI CCNNGG 3 cut(s) 47, 101, 188
BseGI GGATG 3 cut(s) 234, 639, 725
BseJI GATNNNNATC 1 cut(s) 233
BseLI CCNNNNNNNGG 3 cut(s) 132, 536, 735
BseMII CTCAG 3 cut(s) 155, 594, 698
BseNI ACTGG 4 cut(s) 326, 729, 762, 904
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 5 cut(s) 123, 256, 761, 934, 937
BshFI GGCC 5 cut(s) 10, 187, 375, 464, 740
BsiHKAI GWGCWC 1 cut(s) 518
BslFI GGGAC 2 cut(s) 475, 796
BslI CCNNNNNNNGG 3 cut(s) 132, 536, 735
BsmAI GTCTC 1 cut(s) 82
BsmFI GGGAC 2 cut(s) 475, 796
BsmI GAATGC 1 cut(s) 688
BsnI GGCC 5 cut(s) 10, 187, 375, 464, 740
Bso31I GGTCTC 1 cut(s) 82
Bsp1286I GDGCHC 1 cut(s) 518
Bsp1407I TGTACA 1 cut(s) 722
Bsp143I GATC 6 cut(s) 192, 231, 385, 392, 571, 982
BspANI GGCC 5 cut(s) 10, 187, 375, 464, 740
BspCNI CTCAG 3 cut(s) 156, 595, 697
BspHI TCATGA 1 cut(s) 985
BspLI GGNNCC 2 cut(s) 542, 739
BspMAI CTGCAG 1 cut(s) 751
BspOI GCTAGC 1 cut(s) 864
BspPI GGATC 2 cut(s) 200, 400
BspQI GCTCTTC 1 cut(s) 480
BspTNI GGTCTC 1 cut(s) 82
BsrGI TGTACA 1 cut(s) 722
BsrI ACTGG 4 cut(s) 326, 729, 762, 904
BssECI CCNNGG 3 cut(s) 47, 101, 188
BssMI GATC 6 cut(s) 192, 231, 385, 392, 571, 982
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 2 cut(s) 102, 189
Bst4CI ACNGT 1 cut(s) 722
Bst6I CTCTTC 2 cut(s) 480, 826
BstAUI TGTACA 1 cut(s) 722
BstC8I GCNNGC 7 cut(s) 8, 161, 364, 407, 411, 862, 884
BstDEI CTNAG 5 cut(s) 164, 182, 603, 678, 684
BstF5I GGATG 3 cut(s) 234, 639, 725
BstKTI GATC 6 cut(s) 195, 234, 388, 395, 574, 985
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 6 cut(s) 192, 231, 385, 392, 571, 982
BstMWI GCNNNNNNNGC 6 cut(s) 275, 352, 372, 470, 513, 746
BstNI CCWGG 2 cut(s) 102, 189
BstSCI CCNGG 2 cut(s) 100, 187
BstSFI CTRYAG 1 cut(s) 747
BstV1I GCAGC 5 cut(s) 123, 256, 761, 934, 937
Bsu36I CCTNAGG 1 cut(s) 182
BsuRI GGCC 5 cut(s) 10, 187, 375, 464, 740
BtsCI GGATG 3 cut(s) 234, 639, 725
BtsIMutI CAGTG 4 cut(s) 366, 600, 736, 769
Cac8I GCNNGC 7 cut(s) 8, 161, 364, 407, 411, 862, 884
CaiI CAGNNNCTG 2 cut(s) 368, 910
CciI TCATGA 1 cut(s) 985
Cfr13I GGNCC 3 cut(s) 44, 98, 738
Csp6I GTAC 1 cut(s) 723
CviAII CATG 5 cut(s) 95, 218, 460, 703, 986
CviQI GTAC 1 cut(s) 723
DdeI CTNAG 5 cut(s) 164, 182, 603, 678, 684
DpnI GATC 6 cut(s) 194, 233, 387, 394, 573, 984
DpnII GATC 6 cut(s) 192, 231, 385, 392, 571, 982
EaeI YGGCCR 1 cut(s) 462
Eam1104I CTCTTC 2 cut(s) 480, 826
EarI CTCTTC 2 cut(s) 480, 826
Ecl136II GAGCTC 1 cut(s) 516
Eco130I CCWWGG 1 cut(s) 47
Eco147I AGGCCT 2 cut(s) 10, 187
Eco24I GRGCYC 1 cut(s) 518
Eco31I GGTCTC 1 cut(s) 82
Eco32I GATATC 1 cut(s) 67
Eco47I GGWCC 2 cut(s) 44, 98
Eco53kI GAGCTC 1 cut(s) 516
Eco57I CTGAAG 2 cut(s) 78, 390
Eco81I CCTNAGG 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 516
EcoO109I RGGNCCY 1 cut(s) 44
EcoRII CCWGG 2 cut(s) 100, 187
EcoRV GATATC 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 47
EcoT22I ATGCAT 1 cut(s) 787
EcoT38I GRGCYC 1 cut(s) 518
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 5 cut(s) 98, 221, 463, 706, 989
FaqI GGGAC 2 cut(s) 475, 796
FatI CATG 5 cut(s) 94, 217, 459, 702, 985
FbaI TGATCA 1 cut(s) 231
Fnu4HI GCNGC 5 cut(s) 137, 270, 750, 948, 951
FokI GGATG 3 cut(s) 221, 646, 712
FriOI GRGCYC 1 cut(s) 518
Fsp4HI GCNGC 5 cut(s) 137, 270, 750, 948, 951
FspBI CTAG 2 cut(s) 861, 980
GluI GCNGC 5 cut(s) 137, 270, 750, 948, 951
HaeIII GGCC 5 cut(s) 10, 187, 375, 464, 740
Hin1II CATG 5 cut(s) 98, 221, 463, 706, 989
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 5 cut(s) 52, 682, 791, 809, 818
HphI GGTGA 1 cut(s) 843
Hpy188I TCNGA 4 cut(s) 520, 781, 832, 1007
Hpy188III TCNNGA 7 cut(s) 37, 56, 89, 420, 479, 615, 986
HpyAV CCTTC 4 cut(s) 23, 251, 365, 432
HpyCH4III ACNGT 1 cut(s) 722
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 6 cut(s) 139, 147, 159, 272, 749, 785
HpyF10VI GCNNNNNNNGC 6 cut(s) 275, 352, 372, 470, 513, 746
HpyF3I CTNAG 5 cut(s) 164, 182, 603, 678, 684
HpySE526I ACGT 1 cut(s) 199
Hsp92II CATG 5 cut(s) 98, 221, 463, 706, 989
Ksp22I TGATCA 1 cut(s) 231
Kzo9I GATC 6 cut(s) 192, 231, 385, 392, 571, 982
LguI GCTCTTC 1 cut(s) 480
Lsp1109I GCAGC 5 cut(s) 123, 256, 761, 934, 937
LweI GCATC 4 cut(s) 134, 472, 772, 934
MaeI CTAG 2 cut(s) 861, 980
MaeII ACGT 1 cut(s) 199
MaeIII GTNAC 2 cut(s) 849, 899
MalI GATC 6 cut(s) 194, 233, 387, 394, 573, 984
MboI GATC 6 cut(s) 192, 231, 385, 392, 571, 982
MboII GAAGA 8 cut(s) 71, 74, 238, 349, 352, 467, 813, 953
MhlI GDGCHC 1 cut(s) 518
MlsI TGGCCA 1 cut(s) 464
MluCI AATT 4 cut(s) 106, 175, 773, 826
MluNI TGGCCA 1 cut(s) 464
MlyI GAGTC 4 cut(s) 46, 676, 812, 818
MnlI CCTC 7 cut(s) 21, 105, 214, 296, 416, 727, 850
Mox20I TGGCCA 1 cut(s) 464
Mph1103I ATGCAT 1 cut(s) 787
MscI TGGCCA 1 cut(s) 464
MseI TTAA 1 cut(s) 312
MslI CAYNNNNRTG 2 cut(s) 458, 990
Msp20I TGGCCA 1 cut(s) 464
MspA1I CMGCKG 1 cut(s) 533
MspR9I CCNGG 2 cut(s) 102, 189
Mva1269I GAATGC 1 cut(s) 688
MvaI CCWGG 2 cut(s) 102, 189
MwoI GCNNNNNNNGC 6 cut(s) 275, 352, 372, 470, 513, 746
NdeII GATC 6 cut(s) 192, 231, 385, 392, 571, 982
NheI GCTAGC 1 cut(s) 860
NlaIII CATG 5 cut(s) 98, 221, 463, 706, 989
NlaIV GGNNCC 2 cut(s) 542, 739
NmuCI GTSAC 2 cut(s) 849, 899
NsiI ATGCAT 1 cut(s) 787
PagI TCATGA 1 cut(s) 985
PceI AGGCCT 2 cut(s) 10, 187
PciSI GCTCTTC 1 cut(s) 480
PctI GAATGC 1 cut(s) 688
PfeI GAWTC 1 cut(s) 791
PflMI CCANNNNNTGG 1 cut(s) 536
PkrI GCNGC 5 cut(s) 138, 271, 751, 949, 952
PleI GAGTC 4 cut(s) 46, 676, 812, 817
PpsI GAGTC 4 cut(s) 46, 676, 812, 817
PpuMI RGGWCCY 1 cut(s) 44
Psp124BI GAGCTC 1 cut(s) 518
Psp5II RGGWCCY 1 cut(s) 44
Psp6I CCWGG 2 cut(s) 100, 187
PspGI CCWGG 2 cut(s) 100, 187
PspN4I GGNNCC 2 cut(s) 542, 739
PspPI GGNCC 3 cut(s) 44, 98, 738
PspPPI RGGWCCY 1 cut(s) 44
PstI CTGCAG 1 cut(s) 751
PstNI CAGNNNCTG 2 cut(s) 368, 910
PvuII CAGCTG 1 cut(s) 533
RsaI GTAC 1 cut(s) 724
RsaNI GTAC 1 cut(s) 723
RseI CAYNNNNRTG 2 cut(s) 458, 990
SacI GAGCTC 1 cut(s) 518
SapI GCTCTTC 1 cut(s) 480
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 5 cut(s) 137, 270, 750, 948, 951
Sau3AI GATC 6 cut(s) 192, 231, 385, 392, 571, 982
Sau96I GGNCC 3 cut(s) 44, 98, 738
SchI GAGTC 4 cut(s) 46, 676, 812, 818
ScrFI CCNGG 2 cut(s) 102, 189
SduI GDGCHC 1 cut(s) 518
SfaNI GCATC 4 cut(s) 134, 472, 772, 934
SfcI CTRYAG 1 cut(s) 747
SinI GGWCC 2 cut(s) 44, 98
SmiMI CAYNNNNRTG 2 cut(s) 458, 990
Sse9I AATT 4 cut(s) 106, 175, 773, 826
SseBI AGGCCT 2 cut(s) 10, 187
SspMI CTAG 2 cut(s) 861, 980
SstI GAGCTC 1 cut(s) 518
StuI AGGCCT 2 cut(s) 10, 187
StyD4I CCNGG 2 cut(s) 100, 187
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 1 cut(s) 722
TaiI ACGT 1 cut(s) 202
TasI AATT 4 cut(s) 106, 175, 773, 826
TatI WGTACW 1 cut(s) 722
TfiI GAWTC 1 cut(s) 791
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 4 cut(s) 373, 607, 736, 769
TseFI GTSAC 2 cut(s) 849, 899
TseI GCWGC 5 cut(s) 136, 269, 749, 947, 950
Tsp45I GTSAC 2 cut(s) 849, 899
TspDTI ATGAA 6 cut(s) 270, 650, 681, 891, 954, 1002
TspRI CASTG 4 cut(s) 373, 607, 736, 769
Van91I CCANNNNNTGG 1 cut(s) 536
VpaK11BI GGWCC 2 cut(s) 44, 98
XapI RAATTY 1 cut(s) 826
XcmI CCANNNNNNNNNTGG 1 cut(s) 670
XspI CTAG 2 cut(s) 861, 980
Zsp2I ATGCAT 1 cut(s) 787
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.