Rroxscaffold_2G00082930
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013915
Physical Location & Seq
Forward (+)
5662350 .. 5664246
1897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00082930.1

Sequence Viewer

Length: 1092 bp
ATGGGCAGACCTCCGTGCTGTGACAAAGAAGGTGTCAAGAAAGGACCTTGGACTCCTGAAGAGGACATCATTTTAGTCTCTTACATTCAAGAACATGGTCCTGGAAATTGGAGGGCTGTTCCTACCAATACTGGTTTGCTTAGATGTAGCAAGAGTTGCAGGCTTAGATGGACTAACTACCTTAGGCCTGGGATCAAACGTGGGAACTTCACTGACCATGAGGAGAAGATGATCATCCATCTTCAAGCTCTTTTGGGCAATAGATGGGCTGCAATAGCCTCATACCTCCCCCAGAGAACTGACAATGACATTAAGAATTACTGGAACACCCACTTGAAGAAGAAGCTGAACAAGCTTACCCAAATTGGTGGTCACTCAAAAGATGAGGGATTCACTAGTACTTGTTCTCAGCAGGCAACAATAGCAAGAGGTCAATGGGAGAGAAGGCTTCAAACTGATATCCACACGGCTCGACAAGCTCTTCGTGAAGCGCTTTCCCCTGCTGAGAATTACAAGCCTGATGGATTTGCAAGCTCTGTGAGTTTGAGCAGTACTAGCACTAGTACTAGTACTGACTTGAAACCCGCAATGGATATTGTACCTGCAGGCCAGTCGGATCAATCACCATTAACCACTTTGAGTACTACCTATGCTTCAAGCACTGAGAACATTTCAAGGTTGCTCAAAGGTTGGATGAAAAATCCGCCGAAGTCAGCCAAGACTGGTACCACTGCAGCTGCTGGGGTTATTGATTCTACATCAAGTAATGAGGAGGCCACACTATCTGCAGCAAACACTACTACCACTACTAGTACTACTGGCCATGGAAATATCGAATTGTCTAATGCATTTGAATCTCTGTTCGGTTTTGAATGCTCACTTGAAGCTTCAAATTCTGATCTCTCCCCGACTATGTCACCTGATCAGGGCAGCCTATTCCAAGCCGAAAGCAAGCCGGATGTTGGCCAAGATCAAATGCCACTCTCATTGCTGGAGAAGTGGCTTTTTGATGAAGCTGCCGTTATTCATGGGAAAGAAGTGCACTTCAGTGATTTTATTGCTCTAGATGGTGAAAATGCTAACTTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

363

Amino Acids

39.75

Weight (kDa)

6.02

Isoelectric Point (pI)

44.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 2.4e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 4e-10 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 1.8e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 118 3.1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013915)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28910 AT3G28910
fragaria_vesca FvH4_6g48630
malus_domestica MD09G1051000.v1.1 MD17G1050900.v1.1
prunus_persica Prupe.3G268000_v2.0.a1 Prupe.3G268000_v2.0.a1
pyrus_communis pycom17g04580
rosa_chinensis RchiOBHm_Chr2g0168581
rosa_multiflora Rmu_sc0002416.1_g000020
rosa_roxburghii Rroxscaffold_2G00082930
rosa_rugosa Rorug02G0533900
rosa_samantha Rh2AG604200 Rh2BG617200 Rh2CG585500 Rh2DG627700
rosa_wichuraiana Rw2G050100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 610
Acc65I GGTACC 1 cut(s) 725
AccB1I GGYRCC 1 cut(s) 725
AciI CCGC 2 cut(s) 585, 704
AclWI GGATC 2 cut(s) 200, 624
AcoI YGGCCR 2 cut(s) 820, 964
AcsI RAATTY 1 cut(s) 892
AcuI CTGAAG 2 cut(s) 78, 1030
AfaI GTAC 8 cut(s) 400, 553, 565, 571, 600, 643, 727, 814
AfeI AGCGCT 1 cut(s) 492
AfiI CCNNNNNNNGG 2 cut(s) 926, 962
AhlI ACTAGT 4 cut(s) 395, 560, 566, 809
AjnI CCWGG 2 cut(s) 100, 187
AleI CACNNNNGTG 1 cut(s) 1047
AluBI AGCT 8 cut(s) 248, 346, 355, 479, 534, 737, 887, 1016
AluI AGCT 8 cut(s) 248, 346, 355, 479, 534, 737, 887, 1016
Alw21I GWGCWC 1 cut(s) 1044
Alw26I GTCTC 1 cut(s) 82
Alw44I GTGCAC 1 cut(s) 1040
AlwI GGATC 2 cut(s) 200, 624
AlwNI CAGNNNCTG 1 cut(s) 740
Aor51HI AGCGCT 1 cut(s) 492
AoxI GGCC 5 cut(s) 185, 607, 774, 820, 964
ApaLI GTGCAC 1 cut(s) 1040
ApeKI GCWGC 6 cut(s) 269, 734, 737, 788, 930, 1016
ApoI RAATTY 1 cut(s) 892
ArsI GACNNNNNNTTYG 6 cut(s) 18, 50, 355, 387, 465, 497
Asp718I GGTACC 1 cut(s) 725
AspLEI GCGC 1 cut(s) 493
AspS9I GGNCC 2 cut(s) 44, 98
AsuHPI GGTGA 3 cut(s) 615, 909, 1082
AvaII GGWCC 2 cut(s) 44, 98
AxyI CCTNAGG 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 1044
BalI TGGCCA 2 cut(s) 822, 966
BanI GGYRCC 1 cut(s) 725
Bbv12I GWGCWC 1 cut(s) 1044
BbvI GCAGC 6 cut(s) 256, 724, 746, 800, 942, 1003
BccI CCATC 5 cut(s) 162, 246, 258, 515, 1061
BceAI ACGGC 2 cut(s) 483, 1004
BcgI CGANNNNNNTGC 2 cut(s) 594, 628
BciT130I CCWGG 2 cut(s) 102, 189
BclI TGATCA 2 cut(s) 231, 922
BcoDI GTCTC 1 cut(s) 82
BcuI ACTAGT 4 cut(s) 395, 560, 566, 809
BfaI CTAG 6 cut(s) 396, 555, 561, 567, 810, 1064
BfmI CTRYAG 3 cut(s) 603, 732, 786
BfoI RGCGCY 1 cut(s) 494
BfuAI ACCTGC 1 cut(s) 610
BisI GCNGC 6 cut(s) 270, 735, 738, 789, 931, 1017
BlsI GCNGC 6 cut(s) 271, 736, 739, 790, 932, 1018
BmcAI AGTACT 6 cut(s) 400, 553, 565, 571, 643, 814
Bme1390I CCNGG 2 cut(s) 102, 189
Bme18I GGWCC 2 cut(s) 44, 98
BmgT120I GGNCC 2 cut(s) 44, 98
BmiI GGNNCC 1 cut(s) 727
BmrFI CCNGG 2 cut(s) 102, 189
BpmI CTGGAG 1 cut(s) 1013
BsaBI GATNNNNATC 1 cut(s) 233
BsaJI CCNNGG 3 cut(s) 47, 188, 823
Bsc4I CCNNNNNNNGG 2 cut(s) 926, 962
Bse1I ACTGG 5 cut(s) 136, 326, 610, 727, 823
Bse21I CCTNAGG 1 cut(s) 182
Bse3DI GCAATG 2 cut(s) 594, 986
Bse8I GATNNNNATC 1 cut(s) 233
BseBI CCWGG 2 cut(s) 102, 189
BseDI CCNNGG 3 cut(s) 47, 188, 823
BseGI GGATG 3 cut(s) 234, 699, 964
BseJI GATNNNNATC 1 cut(s) 233
BseLI CCNNNNNNNGG 2 cut(s) 926, 962
BseMI GCAATG 2 cut(s) 594, 986
BseMII CTCAG 3 cut(s) 422, 495, 654
BseNI ACTGG 5 cut(s) 136, 326, 610, 727, 823
BseRI GAGGAG 2 cut(s) 236, 785
BseSI GKGCMC 1 cut(s) 1044
BseXI GCAGC 6 cut(s) 256, 724, 746, 800, 942, 1003
BseYI CCCAGC 1 cut(s) 740
BshFI GGCC 5 cut(s) 187, 609, 776, 822, 966
BshNI GGYRCC 1 cut(s) 725
BsiHKAI GWGCWC 1 cut(s) 1044
BsiSI CCGG 1 cut(s) 956
BslI CCNNNNNNNGG 2 cut(s) 926, 962
BsmAI GTCTC 1 cut(s) 82
BsmI GAATGC 1 cut(s) 878
BsnI GGCC 5 cut(s) 187, 609, 776, 822, 966
Bsp1286I GDGCHC 1 cut(s) 1044
Bsp143I GATC 6 cut(s) 192, 231, 616, 898, 922, 970
Bsp19I CCATGG 1 cut(s) 823
BspACI CCGC 2 cut(s) 585, 704
BspANI GGCC 5 cut(s) 187, 609, 776, 822, 966
BspCNI CTCAG 3 cut(s) 421, 496, 655
BspLI GGNNCC 1 cut(s) 727
BspMAI CTGCAG 3 cut(s) 607, 736, 790
BspMI ACCTGC 1 cut(s) 610
BspPI GGATC 2 cut(s) 200, 624
BspQI GCTCTTC 1 cut(s) 486
BspT107I GGYRCC 1 cut(s) 725
BsrDI GCAATG 2 cut(s) 594, 986
BsrI ACTGG 5 cut(s) 136, 326, 610, 727, 823
BssECI CCNNGG 3 cut(s) 47, 188, 823
BssMI GATC 6 cut(s) 192, 231, 616, 898, 922, 970
BssT1I CCWWGG 2 cut(s) 47, 823
Bst2UI CCWGG 2 cut(s) 102, 189
Bst6I CTCTTC 2 cut(s) 54, 486
BstAPI GCANNNNNTGC 1 cut(s) 156
BstC8I GCNNGC 5 cut(s) 161, 414, 532, 607, 953
BstDEI CTNAG 6 cut(s) 140, 164, 182, 408, 504, 663
BstDSI CCRYGG 1 cut(s) 823
BstF5I GGATG 3 cut(s) 234, 699, 964
BstH2I RGCGCY 1 cut(s) 494
BstHHI GCGC 1 cut(s) 493
BstKTI GATC 6 cut(s) 195, 234, 619, 901, 925, 973
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 6 cut(s) 192, 231, 616, 898, 922, 970
BstMWI GCNNNNNNNGC 6 cut(s) 156, 275, 352, 422, 476, 555
BstNI CCWGG 2 cut(s) 102, 189
BstSCI CCNGG 2 cut(s) 100, 187
BstSFI CTRYAG 3 cut(s) 603, 732, 786
BstSLI GKGCMC 1 cut(s) 1044
BstV1I GCAGC 6 cut(s) 256, 724, 746, 800, 942, 1003
BstXI CCANNNNNNTGG 1 cut(s) 368
Bsu36I CCTNAGG 1 cut(s) 182
BsuRI GGCC 5 cut(s) 187, 609, 776, 822, 966
BtgI CCRYGG 1 cut(s) 823
BtsCI GGATG 3 cut(s) 234, 699, 964
BtsI GCAGTG 1 cut(s) 729
BtsIMutI CAGTG 4 cut(s) 210, 660, 729, 1054
BveI ACCTGC 1 cut(s) 610
Cac8I GCNNGC 5 cut(s) 161, 414, 532, 607, 953
CaiI CAGNNNCTG 1 cut(s) 740
CfoI GCGC 1 cut(s) 493
Cfr13I GGNCC 2 cut(s) 44, 98
Csp6I GTAC 8 cut(s) 399, 552, 564, 570, 599, 642, 726, 813
CspCI CAANNNNNGTGG 2 cut(s) 969, 1004
CviAII CATG 4 cut(s) 95, 218, 824, 1028
CviQI GTAC 8 cut(s) 399, 552, 564, 570, 599, 642, 726, 813
DdeI CTNAG 6 cut(s) 140, 164, 182, 408, 504, 663
DpnI GATC 6 cut(s) 194, 233, 618, 900, 924, 972
DpnII GATC 6 cut(s) 192, 231, 616, 898, 922, 970
EaeI YGGCCR 2 cut(s) 820, 964
Eam1104I CTCTTC 2 cut(s) 54, 486
EarI CTCTTC 2 cut(s) 54, 486
EciI GGCGGA 1 cut(s) 693
Eco130I CCWWGG 2 cut(s) 47, 823
Eco147I AGGCCT 1 cut(s) 187
Eco32I GATATC 1 cut(s) 460
Eco47I GGWCC 2 cut(s) 44, 98
Eco47III AGCGCT 1 cut(s) 492
Eco57I CTGAAG 2 cut(s) 78, 1030
Eco81I CCTNAGG 1 cut(s) 182
EcoO109I RGGNCCY 1 cut(s) 44
EcoRII CCWGG 2 cut(s) 100, 187
EcoRV GATATC 1 cut(s) 460
EcoT14I CCWWGG 2 cut(s) 47, 823
EcoT22I ATGCAT 1 cut(s) 850
ErhI CCWWGG 2 cut(s) 47, 823
FaeI CATG 4 cut(s) 98, 221, 827, 1031
FaiI YATR 7 cut(s) 96, 219, 283, 651, 825, 914, 1029
FatI CATG 4 cut(s) 94, 217, 823, 1027
FauI CCCGC 1 cut(s) 592
FbaI TGATCA 2 cut(s) 231, 922
Fnu4HI GCNGC 6 cut(s) 270, 735, 738, 789, 931, 1017
FokI GGATG 3 cut(s) 221, 706, 971
Fsp4HI GCNGC 6 cut(s) 270, 735, 738, 789, 931, 1017
FspBI CTAG 6 cut(s) 396, 555, 561, 567, 810, 1064
GlaI GCGC 1 cut(s) 492
GluI GCNGC 6 cut(s) 270, 735, 738, 789, 931, 1017
GsaI CCCAGC 1 cut(s) 744
GsuI CTGGAG 1 cut(s) 1013
HaeII RGCGCY 1 cut(s) 494
HaeIII GGCC 5 cut(s) 187, 609, 776, 822, 966
HapII CCGG 1 cut(s) 956
HhaI GCGC 1 cut(s) 493
Hin1II CATG 4 cut(s) 98, 221, 827, 1031
Hin6I GCGC 1 cut(s) 491
HinP1I GCGC 1 cut(s) 491
HindIII AAGCTT 2 cut(s) 353, 885
HinfI GANTC 4 cut(s) 52, 390, 752, 854
HpaII CCGG 1 cut(s) 956
HphI GGTGA 3 cut(s) 615, 909, 1082
Hpy166II GTNNAC 1 cut(s) 1042
Hpy188I TCNGA 3 cut(s) 616, 898, 1091
Hpy188III TCNNGA 5 cut(s) 37, 56, 89, 485, 1064
Hpy8I GTNNAC 1 cut(s) 1042
HpyAV CCTTC 2 cut(s) 23, 438
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 8 cut(s) 159, 272, 530, 605, 734, 788, 848, 1042
HpyF10VI GCNNNNNNNGC 6 cut(s) 156, 275, 352, 422, 476, 555
HpyF3I CTNAG 6 cut(s) 140, 164, 182, 408, 504, 663
HpySE526I ACGT 1 cut(s) 199
Hsp92II CATG 4 cut(s) 98, 221, 827, 1031
HspAI GCGC 1 cut(s) 491
KpnI GGTACC 1 cut(s) 729
Ksp22I TGATCA 2 cut(s) 231, 922
Kzo9I GATC 6 cut(s) 192, 231, 616, 898, 922, 970
LguI GCTCTTC 1 cut(s) 486
Lsp1109I GCAGC 6 cut(s) 256, 724, 746, 800, 942, 1003
MaeI CTAG 6 cut(s) 396, 555, 561, 567, 810, 1064
MaeII ACGT 1 cut(s) 199
MaeIII GTNAC 3 cut(s) 20, 371, 915
MalI GATC 6 cut(s) 194, 233, 618, 900, 924, 972
MboI GATC 6 cut(s) 192, 231, 616, 898, 922, 970
MboII GAAGA 6 cut(s) 71, 233, 238, 349, 352, 473
MhlI GDGCHC 1 cut(s) 1044
MlsI TGGCCA 2 cut(s) 822, 966
MluCI AATT 6 cut(s) 106, 316, 363, 508, 836, 892
MluNI TGGCCA 2 cut(s) 822, 966
MlyI GAGTC 1 cut(s) 46
MmeI TCCRAC 2 cut(s) 594, 671
Mox20I TGGCCA 2 cut(s) 822, 966
Mph1103I ATGCAT 1 cut(s) 850
MscI TGGCCA 2 cut(s) 822, 966
MseI TTAA 2 cut(s) 312, 629
MslI CAYNNNNRTG 1 cut(s) 1047
Msp20I TGGCCA 2 cut(s) 822, 966
MspA1I CMGCKG 1 cut(s) 737
MspI CCGG 1 cut(s) 956
MspR9I CCNGG 2 cut(s) 102, 189
Mva1269I GAATGC 1 cut(s) 878
MvaI CCWGG 2 cut(s) 102, 189
MwoI GCNNNNNNNGC 6 cut(s) 156, 275, 352, 422, 476, 555
NcoI CCATGG 1 cut(s) 823
NdeII GATC 6 cut(s) 192, 231, 616, 898, 922, 970
NlaIII CATG 4 cut(s) 98, 221, 827, 1031
NlaIV GGNNCC 1 cut(s) 727
NmuCI GTSAC 3 cut(s) 20, 371, 915
NsiI ATGCAT 1 cut(s) 850
OliI CACNNNNGTG 1 cut(s) 1047
PceI AGGCCT 1 cut(s) 187
PciSI GCTCTTC 1 cut(s) 486
PctI GAATGC 1 cut(s) 878
PfeI GAWTC 3 cut(s) 390, 752, 854
PflFI GACNNNGTC 1 cut(s) 913
PfoI TCCNGGA 1 cut(s) 100
PkrI GCNGC 6 cut(s) 271, 736, 739, 790, 932, 1018
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
PpuMI RGGWCCY 1 cut(s) 44
Psp5II RGGWCCY 1 cut(s) 44
Psp6I CCWGG 2 cut(s) 100, 187
PspFI CCCAGC 1 cut(s) 740
PspGI CCWGG 2 cut(s) 100, 187
PspN4I GGNNCC 1 cut(s) 727
PspPI GGNCC 2 cut(s) 44, 98
PspPPI RGGWCCY 1 cut(s) 44
PstI CTGCAG 3 cut(s) 607, 736, 790
PstNI CAGNNNCTG 1 cut(s) 740
PsyI GACNNNGTC 1 cut(s) 913
PvuII CAGCTG 1 cut(s) 737
RsaI GTAC 8 cut(s) 400, 553, 565, 571, 600, 643, 727, 814
RsaNI GTAC 8 cut(s) 399, 552, 564, 570, 599, 642, 726, 813
RseI CAYNNNNRTG 1 cut(s) 1047
SapI GCTCTTC 1 cut(s) 486
SaqAI TTAA 2 cut(s) 312, 629
SatI GCNGC 6 cut(s) 270, 735, 738, 789, 931, 1017
Sau3AI GATC 6 cut(s) 192, 231, 616, 898, 922, 970
Sau96I GGNCC 2 cut(s) 44, 98
SbfI CCTGCAGG 1 cut(s) 607
ScaI AGTACT 6 cut(s) 400, 553, 565, 571, 643, 814
SchI GAGTC 1 cut(s) 46
ScrFI CCNGG 2 cut(s) 102, 189
SdaI CCTGCAGG 1 cut(s) 607
SduI GDGCHC 1 cut(s) 1044
SfcI CTRYAG 3 cut(s) 603, 732, 786
SinI GGWCC 2 cut(s) 44, 98
SmiMI CAYNNNNRTG 1 cut(s) 1047
SpeI ACTAGT 4 cut(s) 395, 560, 566, 809
Sse8387I CCTGCAGG 1 cut(s) 607
Sse9I AATT 6 cut(s) 106, 316, 363, 508, 836, 892
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 2 cut(s) 585, 704
SspMI CTAG 6 cut(s) 396, 555, 561, 567, 810, 1064
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 2 cut(s) 100, 187
StyI CCWWGG 2 cut(s) 47, 823
TaiI ACGT 1 cut(s) 202
TaqI TCGA 2 cut(s) 472, 834
TasI AATT 6 cut(s) 106, 316, 363, 508, 836, 892
TatI WGTACW 6 cut(s) 398, 551, 563, 569, 641, 812
TfiI GAWTC 3 cut(s) 390, 752, 854
Tru1I TTAA 2 cut(s) 312, 629
Tru9I TTAA 2 cut(s) 312, 629
TscAI CASTG 4 cut(s) 217, 667, 736, 1054
TseFI GTSAC 3 cut(s) 20, 371, 915
TseI GCWGC 6 cut(s) 269, 734, 737, 788, 930, 1016
Tsp45I GTSAC 3 cut(s) 20, 371, 915
TspDTI ATGAA 3 cut(s) 710, 1016, 1026
TspRI CASTG 4 cut(s) 217, 667, 736, 1054
Tth111I GACNNNGTC 1 cut(s) 913
VneI GTGCAC 1 cut(s) 1040
VpaK11BI GGWCC 2 cut(s) 44, 98
XapI RAATTY 1 cut(s) 892
XbaI TCTAGA 1 cut(s) 1063
XspI CTAG 6 cut(s) 396, 555, 561, 567, 810, 1064
ZrmI AGTACT 6 cut(s) 400, 553, 565, 571, 643, 814
Zsp2I ATGCAT 1 cut(s) 850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.